Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 2912 |
Cds size | 1602 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929568.9478433-UTR-H-elongata_contig10338:404..1706 | 1622929568.9478433-UTR-H-elongata_contig10338:404..1706 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10338 405..1706 - |
1691679074.184925-UTR-H-elongata_contig10338:404..1706 | 1691679074.184925-UTR-H-elongata_contig10338:404..1706 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10338 405..1706 - |
1622929569.0519125-UTR-H-elongata_contig10338:4567..4575 | 1622929569.0519125-UTR-H-elongata_contig10338:4567..4575 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10338 4568..4575 - |
1691679074.239039-UTR-H-elongata_contig10338:4567..4575 | 1691679074.239039-UTR-H-elongata_contig10338:4567..4575 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10338 4568..4575 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929568.9746544-CDS-H-elongata_contig10338:1706..2625 | 1622929568.9746544-CDS-H-elongata_contig10338:1706..2625 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 1707..2625 - |
1691679074.1930332-CDS-H-elongata_contig10338:1706..2625 | 1691679074.1930332-CDS-H-elongata_contig10338:1706..2625 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 1707..2625 - |
1622929568.9927626-CDS-H-elongata_contig10338:2839..3174 | 1622929568.9927626-CDS-H-elongata_contig10338:2839..3174 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 2840..3174 - |
1691679074.2007244-CDS-H-elongata_contig10338:2839..3174 | 1691679074.2007244-CDS-H-elongata_contig10338:2839..3174 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 2840..3174 - |
1622929569.010487-CDS-H-elongata_contig10338:3339..3663 | 1622929569.010487-CDS-H-elongata_contig10338:3339..3663 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 3340..3663 - |
1691679074.2095108-CDS-H-elongata_contig10338:3339..3663 | 1691679074.2095108-CDS-H-elongata_contig10338:3339..3663 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 3340..3663 - |
1622929569.0286143-CDS-H-elongata_contig10338:4543..4567 | 1622929569.0286143-CDS-H-elongata_contig10338:4543..4567 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 4544..4567 - |
1691679074.2285507-CDS-H-elongata_contig10338:4543..4567 | 1691679074.2285507-CDS-H-elongata_contig10338:4543..4567 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10338 4544..4567 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10338.281.1 >prot_H-elongata_contig10338.281.1 ID=prot_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=534bp
MGRAFPEEPYMHTENKTPTNSFEFDFSSSKSGPLPASENSPALPSENTPL TSAPGGEASAHLSLTRRAILTTPVAGKRGKILSQLSGALGILAPRATRSS AAAAAATAAAASTASRGLKTIKGSGFTSCQYSSMPPTFRGNRPWLGSHMT QTAVAGTVAPEEKRPSPLPALNMNASLFRENDYYATSAPPNLGYWSTPSK EERSVAALVGTNQSQPSFGSTEGNGYTGKLSAFGDENFWNKMLCDSEADK PPGSSSGDRAGPGSDANGSERHDAFSYFLPSNAPFIDTASGDLQYYSSPS ITSPEIGFGSAGDSFSGSSDYIGLVLAHPSSGKEGTIRTALAPPLETLPE MSSTILEEYECGGDRCARGGGSGSGNDYGGGIINGGSSSYMQPVRRWPII AATIADEGVNHHGDDGADGISGGRKSDVDIMQPSRYRDLCVGATSVANGY NLSARGRQILPSITPTSPWVENVVEVETKLDEAPGGMNEDLPGRIAPNCN GVVGSIRGGNTSLGINSFDSNTAVIFEDHLGML* back to topmRNA from alignment at H-elongata_contig10338:405..4575- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10338.281.1 ID=mRNA_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4171bp|location=Sequence derived from alignment at H-elongata_contig10338:405..4575- (Himanthalia elongata Himel1 dioecious) AAAAGGGCATGGGACGAGCATTTCCGGAAGAAGTGCGTTCTTGACACACA
GTTACTGCTTCAGCACAATTTATACAGTTTAAAAGACGAAATGTGTGGAT
CTCACTGTCTCCTTTTTCCACACGTTTTTACTCATTCGACATCACCTGCA
GGCCTTGCATGCGTCACGTATTCTGCGTGTATATCCAAAGGACAGGCAAG
GAAGAGTTGCCACTGGGAGCCGATAGTGATGTGCCGTTCGTGCTTGTCGC
GCACTTATTACAGTTGATTCCTTTGGCGAGTCATTAGGGGGTCGCTTCCA
CGACATTTTGCCTTCGAATAGCACGAACCCTGCCCCTCGACCTAAACTGT
CCATATATGGGGAGCGCTCGCGAGCTTCCAAGTGTCTAGAGCCGGGAGAT
ACAAACCTTAGTCAGTACATCTAATGAAAAGCAAAGCGACTTGAAAACGA
AAGATCCCCCTTCGTTCGGATACATGCTTTTGTGCAAAGTAATGGGTGGA
TATTCGCCGTTTCCTTCGGTCGACCAAGCGCTTGCCTTGGACGGCTCCAG
CAGTCGAATCTCAATTTGTTTACTTGCATCTTGTGTGTTATTCTAGCTGG
CACACCAAACTCGTGTTTTTCTCCTGATATGGAATGACTCTTTTGTCTGC
GCTGCATTTGTTGTAATGAAATTGAGCGCTTACAACATCTGGAGGCGTAT
ATATAGAGAGAGAGCCCCCCGATAGTTGTTCAGTTGTTTAGTTATTTATA
TATAGTATATCCAATATAATATAATATACAATTTTACGTACTATTCTGAA
CTTTTATCCCTATCCATGTTTCCCTTAGTAAGCGAGGGCGCGAATGACAC
ATTGACCCTTTCGTCCCTCTCTTTACCCCTGGGTGATTCGTTCGTTATTG
GCCACTCCGCAGCCGTACATGCACACTGAAAATAAGACACCAACCAACTC
TTTCGAGTTCGACTTCTCCAGTTCCAAGTCGGGGCCCTTACCCGCCAGCG
AAAATAGCCCAGCGCTCCCGAGCGAAAACACACCGTTAACATCGGCGCCT
GGGGGAGAGGCTTCTGCCCATTTGTCCTTGACTCGACGCGCCATCCTCAC
GACCCCCGTGGCTGGAAAGAGGGGAAAGATTCTTTCGCAACTCAGTGGCG
CGCTCGGAATCTTGGCGCCGCGGGCAACGAGGTCCAGCGCCGCCGCTGCC
GCTGCCACCGCCGCTGCCGCATCTACCGCTTCTAGAGCTATAGTTAGCGG
CAGTAGTAGCGACGGTGACAGCGACATCGGTCAGAGAAGCAACGGTAACA
GTGAAGCGGATCGCGACAAGAAACGTCAGAGAATCGAACGCCCTGCCTCA
GCCGACATCGTTGAGTCAGTTCCGGCCTTCCTGGAAGAGGGTGTGCGGGA
GGGACTTAAGACCATTAAAGGGTCAGGCTTCACGTCGTGTCAGTATAGTT
CAATGCCTCCAACGTTTCGCGGGAATAGACCGTGGCTGGGTAGTCACATG
ACCCAGACGGCGGTCGCGGGGACGGTGGCACCCGAAGAGAAGAGGCCATC
CCCGCTCCCTGCTCTGAATATGAACGCCTCGCTGTTCAGGGAAAACGATT
ACTATGCCACAAGTGCACCTCCAAACCTGGGGTACTGGTCGACGCCGAGC
AAGGAGGAGCGCAGTGTCGCCGCATTGGTCGGTACTAACCAAAGCCAACC
TTCATTTGGGAGCACCGAAGGCAACGGTTACACCGGGTAAGGTTAGGTTT
TATTCAGCTCCAAGACTGCGATTAAATCGTCCGGAAGCGCAGATGTATTT
TCACGTGTCTAGCAGCGCCGTAAATGCAACAACGGCTTCATACAACGCAA
AAACAGTGCTCATGCCACATCTTAAATGTATCTACTTCCCCCACAACCAC
CTCATCGTCTCCACCCCGATCTCCCTCTTGCAACATCCTTATCGCGACAG
CAAGTTGTCGGCCTTCGGCGACGAGAACTTCTGGAACAAGATGCTTTGCG
ATAGCGAAGCCGACAAACCACCTGGATCGTCCTCCGGCGACCGCGCCGGT
CCGGGTAGTGACGCCAATGGGTCTGAGCGCCACGACGCGTTCAGCTATTT
TCTCCCCTCCAACGCACCATTCATCGACACCGCGAGTGGAGACCTCCAGT
ACTACTCATCACCCTCAATAACTTCACCCGAAATCGGTTTTGGCAGCGCG
GGTGATTCTTTCTCTGGGAGCAGTGACTACATCGGCTTAGTCCTTGCACA
CCCTTCTTCAGGCAAAGAGGGAACAATACGCACCGCACTTGCGCCTCCAC
TCGAGACGCTACCAGAAATGAGTTCGACAATTTTAGAGGAATATGAATGC
GGTGGTGATAGGTGCGCTCGGGGAGGTGGTAGTGGGAGCGGGAACGACTA
CGGCGGTGGGATCATAAACGGTGGAAGCTCTTCCTATATGCAGCCAGTTC
GACGGTGGCCCATCATCGCTGCCACTATCGCAGATGAAGGTGTTAATCAC
CATGGAGATGACGGTGCTGACGGGATCAGTGGAGGTAGAAAAAGTGACGT
GGATATAATGCAGCCGTCCCGGTATCGTGACCTCTGCGTCGGGGCGACGA
GCGTAGCGAACGGATACAACCTATCGGCCAGAGGCCGACAGATCTTACCC
TCGATTACTCCAACGTCACCATGGGTGGAGAACGTCGTCGAAGTTGAGAC
AAAGCTGGATGAGGCTCCAGGCGGAATGAACGAAGATCTTCCTGGAAGAA
TTGCGCCCAATTGCAACGGCGTGGTTGGGAGTATCAGAGGAGGCAACACA
TCGCTTGGCATCAACAGTTTTGATTCCAACACCGCAGTTATCTTCGAGGA
CCACCTGGGGATGCTCTAAAGTTGTGGTGCAGGGGATGAAGAAACGATCC
CTGGTGTGTGGCGATGATTAGGTGTTGGTGAACGTACCGCGTAGCAGTGG
TTTCCGAACAACGGGCACAATGGTCACAGCAAGCTACATCAGCAAGCACG
TCCTTTTTACGGCCAACCGTGTGGTTTTGTTAAATCGGCACAGTTGATGA
CCCCACCTCACCACTTCATACTGGGGGAACATTGAATGGAAGAAGAGCGT
GAGGGTTAATGTCTTTTATTTCGTCTTCTTCCTTTCCTTGCTTATATTGT
GTCGCGTTTCTGGCACTGAAATGTGATCTCGACGACAAGGATCGAACAAA
CAGTTGTAGAGACTCGAAAAATCACGATGCTTCAATGCCGGAGCCTGGGC
CACCGACATCTTGATCGATATCTTCATTGTAGAATTTTACGCAAGTATTG
CGTAGAGGTTACACAACATATTAGCATGCGCCTGGAGGGAAGATATTTTC
TGCCTTTCTCTATCTCTTTGTACTCTTTTTAATACTTTTTTTAGCGTCCT
ACCTGGTACGGTTTTTTAAGAACGAGGGTTCTTAACATATGTTTTTAACT
GTTAGGTATGAAGGGCGTACGTATGTTCGCGGCGTTATGGCATTTGCTGT
GCCTGTGCTAAGCGTCAAATTTCAGGAAGTTGAGCTGTATATGATACTTG
TTGAGTTTTTTCCCTTGGCGAAAGACTAGCCGTTCCAGGTCATCTAAAAG
CTCTAATATGTTATTGATCAGAAGCGGAGTTGCTCGTTTTCCGTTGGGGG
TAAGCACGGTTTACGTGTTGATTCATCGCGTTTGAGATATGTTTACCCTA
TCGCTCAAATGGAAGCTCATTTTATGACGGTGGCTAGTCGGTTCACGCGC
CGATTACTTGGTTGTGCAGCGCGCTGTCTTTCCCTCGTTTGTTCTGACTC
TGGATACTATTCCATACAGTACTTCAGTACGTACGAAACCCGAATAGTAC
GTAGTAGTTAAAATAATGGCATGGACGTTTTTACTTAGTCTACTACTTCT
TCTTTTTTTCTCACTTTATTTAGCTCCAGATTTATGAATAGATCGAGAAA
GGGAAAGGGATAGAGCTTATTGCAGTGCAAACTTTCTGTCAGAGGAAATG
TTCTGCTCGGATTTATGCGAGCTATACGGGGAACGGCCCTGGACAACGCT
TTGAACACATCCTCTAACTTTTTACGCGAGTAGATAACTGAGGAAGGAAG
CGGTCGAGATGGCATCTTGTGTCTTTGGAAGATTTGTATGCGGCCCATAA
CGCGCTTGTATTTTGTTACGA back to topCoding sequence (CDS) from alignment at H-elongata_contig10338:405..4575- >mRNA_H-elongata_contig10338.281.1 ID=mRNA_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3204bp|location=Sequence derived from alignment at H-elongata_contig10338:405..4575- (Himanthalia elongata Himel1 dioecious) ATGGGACGAGCATTTCCGGAAGAAATGGGACGAGCATTTCCGGAAGAACC GTACATGCACACTGAAAATAAGACACCAACCAACTCTTTCGAGTTCGACT TCTCCAGTTCCAAGTCGGGGCCCTTACCCGCCAGCGAAAATAGCCCAGCG CTCCCGAGCGAAAACACACCGTTAACATCGGCGCCTGGGGGAGAGGCTTC TGCCCATTTGTCCTTGACTCGACGCGCCATCCTCACGACCCCCGTGGCTG GAAAGAGGGGAAAGATTCTTTCGCAACTCAGTGGCGCGCTCGGAATCTTG GCGCCGCGGGCAACGAGGTCCAGCGCCGCCGCTGCCGCTGCCACCGCCGC TGCCGCATCTACCGCTTCTAGACCGTACATGCACACTGAAAATAAGACAC CAACCAACTCTTTCGAGTTCGACTTCTCCAGTTCCAAGTCGGGGCCCTTA CCCGCCAGCGAAAATAGCCCAGCGCTCCCGAGCGAAAACACACCGTTAAC ATCGGCGCCTGGGGGAGAGGCTTCTGCCCATTTGTCCTTGACTCGACGCG CCATCCTCACGACCCCCGTGGCTGGAAAGAGGGGAAAGATTCTTTCGCAA CTCAGTGGCGCGCTCGGAATCTTGGCGCCGCGGGCAACGAGGTCCAGCGC CGCCGCTGCCGCTGCCACCGCCGCTGCCGCATCTACCGCTTCTAGAGGAC TTAAGACCATTAAAGGGTCAGGCTTCACGTCGTGTCAGTATAGTTCAATG CCTCCAACGTTTCGCGGGAATAGACCGTGGCTGGGTAGTCACATGACCCA GACGGCGGTCGCGGGGACGGTGGCACCCGAAGAGAAGAGGCCATCCCCGC TCCCTGCTCTGAATATGAACGCCTCGCTGTTCAGGGAAAACGATTACTAT GCCACAAGTGCACCTCCAAACCTGGGGTACTGGTCGACGCCGAGCAAGGA GGAGCGCAGTGTCGCCGCATTGGTCGGTACTAACCAAAGCCAACCTTCAT TTGGGAGCACCGAAGGCAACGGTTACACCGGGGACTTAAGACCATTAAAG GGTCAGGCTTCACGTCGTGTCAGTATAGTTCAATGCCTCCAACGTTTCGC GGGAATAGACCGTGGCTGGGTAGTCACATGACCCAGACGGCGGTCGCGGG GACGGTGGCACCCGAAGAGAAGAGGCCATCCCCGCTCCCTGCTCTGAATA TGAACGCCTCGCTGTTCAGGGAAAACGATTACTATGCCACAAGTGCACCT CCAAACCTGGGGTACTGGTCGACGCCGAGCAAGGAGGAGCGCAGTGTCGC CGCATTGGTCGGTACTAACCAAAGCCAACCTTCATTTGGGAGCACCGAAG GCAACGGTTACACCGGCAAGTTGTCGGCCTTCGGCGACGAGAACTTCTGG AACAAGATGCTTTGCGATAGCGAAGCCGACAAACCACCTGGATCGTCCTC CGGCGACCGCGCCGGTCCGGGTAGTGACGCCAATGGGTCTGAGCGCCACG ACGCGTTCAGCTATTTTCTCCCCTCCAACGCACCATTCATCGACACCGCG AGTGGAGACCTCCAGTACTACTCATCACCCTCAATAACTTCACCCGAAAT CGGTTTTGGCAGCGCGGGTGATTCTTTCTCTGGGAGCAGTGACTACATCG GCTTAGTCCTTGCACACCCTTCTTCAGGCAAAGAGGGAACAATACGCACC GCACTTGCGCCTCCACTCGAGACGCTACCAGAAATGAGTTCGACAATTTT AGAGGAATATGAATGCGGTGGTGATAGGTGCGCTCGGGGAGGTGGTAGTG GGAGCGGGAACGACTACGGCGGTGGGATCATAAACGGTGGAAGCTCTTCC TATATGCAGCCAGTTCGACGGTGGCCCATCATCGCTGCCACTATCGCAGA TGAAGGTGTTAATCACCATGGAGATGACGGTGCTGACGGGATCAGTGGAG GTAGAAAAAGTGACGTGGATATAATGCAGCCGTCCCGGTATCGTGACCTC TGCGTCGGGGCGACGAGCGTAGCGAACGGATACAACCTATCGGCCAGAGG CCGACAGATCTTACCCTCGATTACTCCAACGTCACCATGGGTGGAGAACG TCGTCGAAGTTGAGACAAAGCTGGATGAGGCTCCAGGCGGAATGAACGAA GATCTTCCTGGAAGAATTGCGCCCAATTGCAACGGCGTGGTTGGGAGTAT CAGAGGAGGCAACACATCGCTTGGCATCAACAGTTTTGATTCCAACACCG CAGTTATCTTCGAGGACCACCTGGGGATGCTCTAACAAGTTGTCGGCCTT CGGCGACGAGAACTTCTGGAACAAGATGCTTTGCGATAGCGAAGCCGACA AACCACCTGGATCGTCCTCCGGCGACCGCGCCGGTCCGGGTAGTGACGCC AATGGGTCTGAGCGCCACGACGCGTTCAGCTATTTTCTCCCCTCCAACGC ACCATTCATCGACACCGCGAGTGGAGACCTCCAGTACTACTCATCACCCT CAATAACTTCACCCGAAATCGGTTTTGGCAGCGCGGGTGATTCTTTCTCT GGGAGCAGTGACTACATCGGCTTAGTCCTTGCACACCCTTCTTCAGGCAA AGAGGGAACAATACGCACCGCACTTGCGCCTCCACTCGAGACGCTACCAG AAATGAGTTCGACAATTTTAGAGGAATATGAATGCGGTGGTGATAGGTGC GCTCGGGGAGGTGGTAGTGGGAGCGGGAACGACTACGGCGGTGGGATCAT AAACGGTGGAAGCTCTTCCTATATGCAGCCAGTTCGACGGTGGCCCATCA TCGCTGCCACTATCGCAGATGAAGGTGTTAATCACCATGGAGATGACGGT GCTGACGGGATCAGTGGAGGTAGAAAAAGTGACGTGGATATAATGCAGCC GTCCCGGTATCGTGACCTCTGCGTCGGGGCGACGAGCGTAGCGAACGGAT ACAACCTATCGGCCAGAGGCCGACAGATCTTACCCTCGATTACTCCAACG TCACCATGGGTGGAGAACGTCGTCGAAGTTGAGACAAAGCTGGATGAGGC TCCAGGCGGAATGAACGAAGATCTTCCTGGAAGAATTGCGCCCAATTGCA ACGGCGTGGTTGGGAGTATCAGAGGAGGCAACACATCGCTTGGCATCAAC AGTTTTGATTCCAACACCGCAGTTATCTTCGAGGACCACCTGGGGATGCT CTAA back to top
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