mRNA_H-elongata_contig103367.279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103367.279.1
Unique NamemRNA_H-elongata_contig103367.279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.980e-15
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 SLAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            +LA  YND SVLENFH++EAFKVLYD+ TNIL+GL+ ++ R FRQLVIK+
Sbjct:  401 ALATRYNDGSVLENFHISEAFKVLYDEETNILDGLSADDARHFRQLVIKI 450
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A1R2AT59_9CILI (PDEase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AT59_9CILI)

HSP 1 Score: 63.5 bits (153), Expect = 1.760e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SLAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVI 144
            SLAI YND SVLENFHVA AFKVLY++  N +EG+ +E+ ++FR   I
Sbjct:  222 SLAIMYNDKSVLENFHVASAFKVLYEENNNFIEGVQKEDSKRFRMKCI 269
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: UPI000811645F (calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811645F)

HSP 1 Score: 61.6 bits (148), Expect = 8.510e-10
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            + + YND SVLENFH++EAFKV+  D  NI++ L++EE R+FR L+I++
Sbjct:  243 ITLLYNDRSVLENFHISEAFKVMRKDEANIIQNLSREEYREFRTLIIEM 291
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A0G4GES2_9ALVE (Phosphodiesterase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GES2_9ALVE)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 SLAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIK 147
            SLA+TYND ++LENFH AE F++L  D  N+ EG+ +E+ + FR LV++
Sbjct:  664 SLAVTYNDRAILENFHAAETFRILLSDRCNVTEGMVREDFQTFRALVLE 712
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A6P6YES1_DERPT (Phosphodiesterase n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YES1_DERPT)

HSP 1 Score: 59.7 bits (143), Expect = 4.070e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            +++ YND SVLENFH++EAF+V+  D  NI+  L++EE R+FR L+I++
Sbjct:  317 ISLLYNDRSVLENFHISEAFRVMRKDDANIVANLSREEYREFRSLIIEM 365
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A6P6YG42_DERPT (Phosphodiesterase n=2 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YG42_DERPT)

HSP 1 Score: 59.7 bits (143), Expect = 4.080e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            +++ YND SVLENFH++EAF+V+  D  NI+  L++EE R+FR L+I++
Sbjct:  526 ISLLYNDRSVLENFHISEAFRVMRKDDANIVANLSREEYREFRSLIIEM 574
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: UPI001F104AC5 (calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1-like n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F104AC5)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            +++ YND SVLENFH++EAF+V+  D  NI+  L++EE R+FR L+I++
Sbjct:  216 ISLLYNDRSVLENFHISEAFRVIRKDDANIVANLSREEYREFRTLIIEM 264
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: UPI001FA17132 (Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001FA17132)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV 150
            +++ YND SVLENFH++EAF+V+  D  NI+  L++EE R+FR L+I++
Sbjct:  962 ISLLYNDRSVLENFHISEAFRVIRKDDANIVANLSREEYREFRTLIIEM 1010
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A2P6NGP8_9EUKA (Phosphodiesterase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGP8_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 7.630e-9
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVI 144
            LA+ YND SVLE+FHVA AFKVLY+D  NI  GL + + ++ R+ ++
Sbjct:  841 LAVRYNDRSVLESFHVASAFKVLYEDSNNIFSGLTEAQRKEARETIV 887
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BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Match: A0A7S1RHY1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RHY1_ALECA)

HSP 1 Score: 55.8 bits (133), Expect = 1.840e-8
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 LAITYNDASVLENFHVAEAFKVLYDDP-TNILEGLAQEEGRQFRQLVI 144
            LA+TYND SVLEN+H+A+AFK+L++ P TNILE L+ +E  + R+ +I
Sbjct:   94 LALTYNDQSVLENYHIAQAFKLLFNCPDTNILESLSSDELSRARKEII 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103367.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTM6_ECTSI5.980e-1568.00Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A1R2AT59_9CILI1.760e-1060.42PDEase domain-containing protein n=1 Tax=Stentor c... [more]
UPI000811645F8.510e-1053.06calcium/calmodulin-dependent 3',5'-cyclic nucleoti... [more]
A0A0G4GES2_9ALVE2.180e-951.02Phosphodiesterase n=1 Tax=Chromera velia CCMP2878 ... [more]
A0A6P6YES1_DERPT4.070e-951.02Phosphodiesterase n=1 Tax=Dermatophagoides pterony... [more]
A0A6P6YG42_DERPT4.080e-951.02Phosphodiesterase n=2 Tax=Dermatophagoides pterony... [more]
UPI001F104AC55.560e-951.02calcium/calmodulin-dependent 3',5'-cyclic nucleoti... [more]
UPI001FA171325.580e-951.02Calcium/calmodulin-dependent 3',5'-cyclic nucleoti... [more]
A0A2P6NGP8_9EUKA7.630e-953.19Phosphodiesterase n=1 Tax=Planoprotostelium fungiv... [more]
A0A7S1RHY1_ALECA1.840e-856.25Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103367contigH-elongata_contig103367:457..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D8LTM6
Preferred namepde-3
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
EggNOG free text desc.calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3688@1,KOG3688@2759
EC3.1.4.17,3.1.4.53
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.7754343-CDS-H-elongata_contig103367:456..6061622929568.7754343-CDS-H-elongata_contig103367:456..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103367 457..606 -
1691679074.147289-CDS-H-elongata_contig103367:456..6061691679074.147289-CDS-H-elongata_contig103367:456..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103367 457..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103367.279.1prot_H-elongata_contig103367.279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103367 457..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103367.279.1

>prot_H-elongata_contig103367.279.1 ID=prot_H-elongata_contig103367.279.1|Name=mRNA_H-elongata_contig103367.279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
SLAITYNDASVLENFHVAEAFKVLYDDPTNILEGLAQEEGRQFRQLVIKV
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mRNA from alignment at H-elongata_contig103367:457..606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103367.279.1 ID=mRNA_H-elongata_contig103367.279.1|Name=mRNA_H-elongata_contig103367.279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig103367:457..606- (Himanthalia elongata Himel1 dioecious)
AGCTTGGCAATCACGTACAACGACGCCTCCGTGCTGGAAAACTTTCACGT
GGCGGAAGCCTTCAAGGTGCTTTACGACGACCCGACTAACATCCTCGAGG
GGCTGGCCCAGGAAGAAGGGCGACAATTCCGACAACTTGTCATAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig103367:457..606-

>mRNA_H-elongata_contig103367.279.1 ID=mRNA_H-elongata_contig103367.279.1|Name=mRNA_H-elongata_contig103367.279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig103367:457..606- (Himanthalia elongata Himel1 dioecious)
AGCTTGGCAATCACGTACAACGACGCCTCCGTGCTGGAAAACTTTCACGT
GGCGGAAGCCTTCAAGGTGCTTTACGACGACCCGACTAACATCCTCGAGG
GGCTGGCCCAGGAAGAAGGGCGACAATTCCGACAACTTGTCATAAAGGTA
AGCTTGGCAATCACGTACAACGACGCCTCCGTGCTGGAAAACTTTCACGT
GGCGGAAGCCTTCAAGGTGCTTTACGACGACCCGACTAACATCCTCGAGG
GGCTGGCCCAGGAAGAAGGGCGACAATTCCGACAACTTGTCATAAAGGTA
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