mRNA_H-elongata_contig10335.278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10335.278.1
Unique NamemRNA_H-elongata_contig10335.278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: D7FS15_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS15_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 5.380e-70
Identity = 104/148 (70.27%), Postives = 120/148 (81.08%), Query Frame = 1
Query:   25 KRVIGGMRGVHAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPG-IHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
             RVI G+R VH I   IF CTL CY ERMGF IAFTE+A++  LNE  KGTV+S+FFYGYAVMQLPG WLSAR+GG RILGLSFALWG IS+  PG +H G T   +A RV +GASQG++IPA+HTLLA+W+PVHERSRLVTLAMSGM
Sbjct:    8 SRVIWGLRDVHVIVSMIFACTLACYFERMGFSIAFTELAKSASLNEADKGTVMSAFFYGYAVMQLPGGWLSARHGGARILGLSFALWGSISMVMPGTVHDGSTTILMACRVAIGASQGMFIPASHTLLAKWIPVHERSRLVTLAMSGM 155          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A6H5KI05_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI05_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.020e-65
Identity = 100/148 (67.57%), Postives = 115/148 (77.70%), Query Frame = 1
Query:   25 KRVIGGMRGVHAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPG-IHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
             RVI G+R VH I   IF CTL CY ERMGF IAFTE+A +  L E   GT +S+F+YGYAVMQLP  WLSARYGG RILGLSFALWG IS+  PG +H G T   +A RV +GASQGL+IPA+HTLLA+W+PVHERSRLVTLAMSG+
Sbjct:    8 SRVIWGLRDVHVIVSMIFACTLACYFERMGFSIAFTELANSASLKEADMGTAMSAFYYGYAVMQLPAGWLSARYGGARILGLSFALWGSISMVMPGTVHDGSTTILMACRVAIGASQGLFIPASHTLLAKWIPVHERSRLVTLAMSGI 155          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A2P6TP31_CHLSO (Putative anion transporter 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP31_CHLSO)

HSP 1 Score: 149 bits (376), Expect = 6.600e-40
Identity = 76/159 (47.80%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    4 TVNTSGSKRVIGGMRGV-----HAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            T      +   GG RGV     H +  C FL T+T Y+ER+GF IAFT +A   G+ E +KG VLS+F++GYA+ Q+PG W + RYGG R+L  SFALW  + L TPG   G T    A RV +G +QG  IPA HT+LA W+P  ER+R V+L  SG+
Sbjct:   23 TPQPGAGRAAAGGKRGVLEPRFHIVLAC-FLATVTIYVERVGFSIAFTAMASKVGVEEGLKGAVLSAFYWGYAISQVPGGWAAQRYGGERVLSWSFALWSAVVLLTPG-SAGNTKLMAAVRVGVGFAQGFVIPAVHTVLAGWIPPSERARAVSLTTSGL 179          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: D8U1X0_VOLCA (MFS domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8U1X0_VOLCA)

HSP 1 Score: 146 bits (369), Expect = 2.920e-39
Identity = 69/137 (50.36%), Postives = 96/137 (70.07%), Query Frame = 1
Query:   55 HAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            + I    FL T T Y+ER+GF IAFT++A+  G++ETVKGTVLS+F++GYA+ Q+PG W + +YGG  +L L FA W   S+FTP   +  +   +A RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:    8 YVIVLATFLATFTAYVERVGFSIAFTDLAKEAGIDETVKGTVLSAFYWGYALSQIPGGWAAQQYGGRLMLLLCFACWSAASIFTPTNARHASAIILA-RVAVGVAQGFLIPAVHTVLSQWIPPHERARAVSLTTSGM 143          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A2K3DEV9_CHLRE (MFS domain-containing protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DEV9_CHLRE)

HSP 1 Score: 145 bits (366), Expect = 8.760e-39
Identity = 73/155 (47.10%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 MTVNTSGSKRVIGGMRGVHAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            MTV T    R+       + I    FL T T Y+ER+GF IAFT++A+  G++E+VKG VLS+F++GYA+ Q+PG W + +YGG  +L L FA W   S+ TP  +   T+  VA RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:    1 MTVATRSRYRI----EPRYVIVLATFLATFTAYVERVGFSIAFTDLAKEAGVDESVKGAVLSAFYWGYALSQIPGGWAAQQYGGRIMLLLCFASWSAASILTP-TNARHTYAIVAARVAVGVAQGFLIPAVHTVLSQWIPPHERARAVSLTTSGM 150          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A2J8A4N2_9CHLO (Putative anion transporter 7 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4N2_9CHLO)

HSP 1 Score: 145 bits (366), Expect = 9.220e-39
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   55 HAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            H I    FL T T Y+ER+GF IAFT++A+  G++E VKG VLS+F++GYA+ Q+PG W + +YGG  +L L FA W  +S+ TP  +   T   VA RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:   16 HVIILATFLATFTAYVERVGFSIAFTDLAKEAGIDEAVKGKVLSAFYWGYALSQIPGGWAAQQYGGRIMLLLCFASWSAVSILTP-TNARHTAAIVAARVCVGVAQGFLIPAVHTVLSQWIPPHERARAVSLTTSGM 151          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A2V0PH18_9CHLO (Anion transporter-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PH18_9CHLO)

HSP 1 Score: 145 bits (367), Expect = 1.480e-38
Identity = 70/137 (51.09%), Postives = 89/137 (64.96%), Query Frame = 1
Query:   55 HAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            + I    FL T   Y+ER+GF IAFTE+A+A G  E +KG VLS+F++GY V Q+PG W +  YGG  +L LSFALW   SL TP     GT      RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:   52 YLIVAACFLATFVAYVERVGFSIAFTEMAKAAGAGEALKGEVLSAFYWGYGVSQIPGGWAAQIYGGRAMLALSFALWSVASLLTPAAAAFGTVGVCVARVCVGVAQGGLIPAVHTVLSQWIPPHERARAVSLTTSGM 188          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A835XG38_9CHLO (MFS domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XG38_9CHLO)

HSP 1 Score: 144 bits (363), Expect = 2.530e-38
Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 MTVNTSGSKRVIGGMRGVHAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            MTV +S   R+       + I    F  T T Y+ER+GF IAFT++A+  G++E+VKGTVLS+F++GYA+ Q+PG W + RYGG  +L L FA W  IS+ TP   +  TF     RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:    1 MTVASSRRYRI----EPRYVIVFATFFATFTAYVERVGFSIAFTDLAKVSGIDESVKGTVLSAFYWGYALSQIPGGWAAQRYGGRIMLILCFASWSLISILTPTDARH-TFAISMARVCVGIAQGFLIPAVHTVLSQWIPPHERARAVSLTTSGM 150          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A150G433_GONPE (MFS domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G433_GONPE)

HSP 1 Score: 142 bits (359), Expect = 8.940e-38
Identity = 67/137 (48.91%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   55 HAITGCIFLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            + I    FL T T Y+ER+GF IAFT++A+  G++E+VKGTVLS+F++GYA+ Q+PG W + +YGG  +L L FA W  +S+ TP  +   T   +  RV +G +QG  IPA HT+L+QW+P HER+R V+L  SGM
Sbjct:   16 YVIVLATFLATFTAYVERVGFSIAFTDLAKEAGIDESVKGTVLSAFYWGYALSQIPGGWAAQQYGGRIMLLLCFASWSLVSILTP-TNARHTLAIIFARVCIGVAQGFLIPAVHTVLSQWIPPHERARAVSLTTSGM 151          
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Match: A0A5N6LN47_9ASTR (MFS domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LN47_9ASTR)

HSP 1 Score: 142 bits (359), Expect = 1.330e-37
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   76 FLCTLTCYIERMGFPIAFTEIARAEGLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISLFTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTLAMSGM 465
            FLCT  CYIER+GF IA+T  A AEG++++ KGT+LS+F+YGYA+ Q+PG W + + GG R+L LSF LW       P +     F  +  R+++G SQG   P+ HT+LAQWVP HERSR V+L  SGM
Sbjct:   17 FLCTSVCYIERVGFSIAYTVAADAEGVSQSSKGTILSTFYYGYALSQVPGGWAAQKIGGRRVLLLSFVLWSLTCALVP-LDPNRVFILIMARLLVGVSQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGM 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10335.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS15_ECTSI5.380e-7070.27MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KI05_9PHAE1.020e-6567.57MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P6TP31_CHLSO6.600e-4047.80Putative anion transporter 5 n=1 Tax=Chlorella sor... [more]
D8U1X0_VOLCA2.920e-3950.36MFS domain-containing protein n=3 Tax=Volvox TaxID... [more]
A0A2K3DEV9_CHLRE8.760e-3947.10MFS domain-containing protein n=4 Tax=Chlamydomona... [more]
A0A2J8A4N2_9CHLO9.220e-3950.36Putative anion transporter 7 n=1 Tax=Tetrabaena so... [more]
A0A2V0PH18_9CHLO1.480e-3851.09Anion transporter-like n=1 Tax=Raphidocelis subcap... [more]
A0A835XG38_9CHLO2.530e-3847.74MFS domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A150G433_GONPE8.940e-3848.91MFS domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A5N6LN47_9ASTR1.330e-3751.54MFS domain-containing protein n=1 Tax=Mikania micr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10335contigH-elongata_contig10335:8273..8740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D7FS15
Preferred nameSLC17A9
KEGG koko:K08193,ko:K10398,ko:K12303
KEGG TC2.A.1.14,2.A.1.14.21
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015291,GO:0015318,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0034220,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0098656
EggNOG free text desc.transmembrane transport
EggNOG OGsKOG2532@1,KOG2532@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.725412-CDS-H-elongata_contig10335:8272..87401622929568.725412-CDS-H-elongata_contig10335:8272..8740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 8273..8740 -
1691679074.1365325-CDS-H-elongata_contig10335:8272..87401691679074.1365325-CDS-H-elongata_contig10335:8272..8740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 8273..8740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10335.278.1prot_H-elongata_contig10335.278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10335 8273..8740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10335.278.1

>prot_H-elongata_contig10335.278.1 ID=prot_H-elongata_contig10335.278.1|Name=mRNA_H-elongata_contig10335.278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MTVNTSGSKRVIGGMRGVHAITGCIFLCTLTCYIERMGFPIAFTEIARAE
GLNETVKGTVLSSFFYGYAVMQLPGSWLSARYGGTRILGLSFALWGGISL
FTPGIHKGGTFFFVATRVVMGASQGLYIPAAHTLLAQWVPVHERSRLVTL
AMSGM*
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mRNA from alignment at H-elongata_contig10335:8273..8740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10335.278.1 ID=mRNA_H-elongata_contig10335.278.1|Name=mRNA_H-elongata_contig10335.278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig10335:8273..8740- (Himanthalia elongata Himel1 dioecious)
ATGACGGTGAATACCTCGGGCAGTAAGCGCGTCATTGGCGGAATGCGAGG GGTGCATGCGATCACGGGTTGCATTTTCCTCTGCACCCTTACTTGCTACA TCGAGCGAATGGGCTTCCCTATCGCGTTCACCGAGATCGCTCGAGCGGAG GGATTAAATGAGACAGTTAAAGGCACTGTCCTTTCGTCATTTTTCTATGG CTACGCCGTCATGCAACTTCCCGGAAGCTGGCTCTCTGCACGCTACGGAG GAACGCGTATCCTGGGACTCTCATTTGCTCTATGGGGAGGGATCTCTCTC TTTACTCCTGGAATTCACAAGGGCGGCACCTTTTTTTTCGTGGCAACCCG TGTGGTAATGGGTGCCTCCCAAGGATTGTATATACCTGCTGCGCACACAC TTCTTGCCCAATGGGTTCCCGTACACGAACGAAGTCGGCTGGTGACGCTA GCCATGTCAGGAATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig10335:8273..8740-

>mRNA_H-elongata_contig10335.278.1 ID=mRNA_H-elongata_contig10335.278.1|Name=mRNA_H-elongata_contig10335.278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig10335:8273..8740- (Himanthalia elongata Himel1 dioecious)
ATGACGGTGAATACCTCGGGCAGTAAGCGCGTCATTGGCGGAATGCGAGG
GGTGCATGCGATCACGGGTTGCATTTTCCTCTGCACCCTTACTTGCTACA
TCGAGCGAATGGGCTTCCCTATCGCGTTCACCGAGATCGCTCGAGCGGAG
GGATTAAATGAGACAGTTAAAGGCACTGTCCTTTCGTCATTTTTCTATGG
CTACGCCGTCATGCAACTTCCCGGAAGCTGGCTCTCTGCACGCTACGGAG
GAACGCGTATCCTGGGACTCTCATTTGCTCTATGGGGAGGGATCTCTCTC
TTTACTCCTGGAATTCACAAGGGCGGCACCTTTTTTTTCGTGGCAACCCG
TGTGGTAATGGGTGCCTCCCAAGGATTGTATATACCTGCTGCGCACACAC
TTCTTGCCCAATGGGTTCCCGTACACGAACGAAGTCGGCTGGTGACGCTA
GCCATGTCAGGAATGTGAATGACGGTGAATACCTCGGGCAGTAAGCGCGT
CATTGGCGGAATGCGAGGGGTGCATGCGATCACGGGTTGCATTTTCCTCT
GCACCCTTACTTGCTACATCGAGCGAATGGGCTTCCCTATCGCGTTCACC
GAGATCGCTCGAGCGGAGGGATTAAATGAGACAGTTAAAGGCACTGTCCT
TTCGTCATTTTTCTATGGCTACGCCGTCATGCAACTTCCCGGAAGCTGGC
TCTCTGCACGCTACGGAGGAACGCGTATCCTGGGACTCTCATTTGCTCTA
TGGGGAGGGATCTCTCTCTTTACTCCTGGAATTCACAAGGGCGGCACCTT
TTTTTTCGTGGCAACCCGTGTGGTAATGGGTGCCTCCCAAGGATTGTATA
TACCTGCTGCGCACACACTTCTTGCCCAATGGGTTCCCGTACACGAACGA
AGTCGGCTGGTGACGCTAGCCATGTCAGGAATGTGA
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