mRNA_H-elongata_contig10335.277.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10335.277.1
Unique NamemRNA_H-elongata_contig10335.277.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10335.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10335contigH-elongata_contig10335:1452..4620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2320
Cds size1233
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10335.277.1prot_H-elongata_contig10335.277.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10335 2292..4373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.5913296-UTR-H-elongata_contig10335:1451..22911622929568.5913296-UTR-H-elongata_contig10335:1451..2291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10335 1452..2291 +
1691679074.0967662-UTR-H-elongata_contig10335:1451..22911691679074.0967662-UTR-H-elongata_contig10335:1451..2291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10335 1452..2291 +
1622929568.668652-UTR-H-elongata_contig10335:4373..46201622929568.668652-UTR-H-elongata_contig10335:4373..4620Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10335 4374..4620 +
1691679074.1282744-UTR-H-elongata_contig10335:4373..46201691679074.1282744-UTR-H-elongata_contig10335:4373..4620Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10335 4374..4620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.6122093-CDS-H-elongata_contig10335:2291..23871622929568.6122093-CDS-H-elongata_contig10335:2291..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 2292..2387 +
1691679074.1038544-CDS-H-elongata_contig10335:2291..23871691679074.1038544-CDS-H-elongata_contig10335:2291..2387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 2292..2387 +
1622929568.6279063-CDS-H-elongata_contig10335:2898..34871622929568.6279063-CDS-H-elongata_contig10335:2898..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 2899..3487 +
1691679074.1111555-CDS-H-elongata_contig10335:2898..34871691679074.1111555-CDS-H-elongata_contig10335:2898..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 2899..3487 +
1622929568.643386-CDS-H-elongata_contig10335:3825..43731622929568.643386-CDS-H-elongata_contig10335:3825..4373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 3826..4373 +
1691679074.1206818-CDS-H-elongata_contig10335:3825..43731691679074.1206818-CDS-H-elongata_contig10335:3825..4373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10335 3826..4373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10335.277.1

>prot_H-elongata_contig10335.277.1 ID=prot_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=411bp
MGADRIRKKRRSQRPLTYEDTTPQPRWSATDEGLPGPTDGKHKKSVSEDK
AISADKDVESDSEVLIAIKRCWPVTKDGAAVADSDDAVRRNHSTKAILSE
TEKICGPMTNGNTLDSDSDDEDGDELEESLPAYTEKNDVGDGSSDITVCG
DSPNISRSEGVMYVRKIPGKNKPYDLWPQQYLRMACRNRGIASMSKSTDK
GRMSELLSALDKQKNRKTPYLEDFMMENGRDACRAELPDSQGREETGVEG
VRPGGVAGDARKRKEASVNGRERAEKHGGSRKKQRLEEEVKRNAKIVANE
TLSVLGPALAQILSPSRPGTMEGGEPEHSTWVTEAKYHEDIARSEAESSK
LKLIQARKEANFVLMKRYTEKTAELAEAKRDGTDPFAIQVLEHFVKSLTK
ELADMMEAES*
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mRNA from alignment at H-elongata_contig10335:1452..4620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10335.277.1 ID=mRNA_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3169bp|location=Sequence derived from alignment at H-elongata_contig10335:1452..4620+ (Himanthalia elongata Himel1 dioecious)
CAAAGCTAATTTGAGGTCCCGGCGCCTTCGATAAGCCCGTTCTTATTGCC
GCTGGCGATAAGGAAGCCTCATCTTGCACAGCTTGAGCTAACCTCTTCAG
AGCCAGGGGCTTGATGAGCGTGTCAGTGACGCAGGCCTAAAGAAGAGCGA
CTAGCTTCTTAAGGTATGCCTCTTCATGCGACATTTCCTGTGAAAATTCC
CTTCCCTCTCGGAATTGTCTCCGGGATCGACCCAACAAAGCCTCTCCTGT
GTGATAGCTGTCCTTTTCACCTCCGGCGGCCGAATCCAACGCTAACGCTG
CGACTGCCGTACGCAATGCTAATTTGGGGTCCCGGTGCCTTCGAGAAGCC
TGCTCTTGTTGTCGCTGGCGATAAGGTAGCCTCATCTTGCACAGCTTGAG
CTAACATATCCTTATTTTCTTCTACTGTAAACTGAGACAAGACTGTCTAC
AGCGGTTGCAACACCAGGAGCATGTTTCCAAACTTTTCGAATGTGGAAAT
GGACAAACAGCGACCTCGAGGTGCTTGCCCATTTCTCAATTTTGGAAGTG
GAAATTTGGAAAGTTTGGAAAATATTCCAAAATTTTCATTTTGTTTTTAT
AAGAGCCGTTTTAGACCGGAATAAATGTTTCCAATAAAAAACACTTTCCA
AAATTGAAAAATTTATAAAATCATTCTAGGCCTATTATGTCAGCAGTTGA
AGTGAATATTTGGAAAAAAGAACCCCGCTTTCAATAGTATAATAGGGCTC
GGGACAGTTTGAACACATTTTTCGGGTCCTAGAACCCTCAAGAACGACAC
AGACAAAATTTTCAAAGACCGCCGCAGTAGATATCAGTAGATGGGAGCAG
ACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGACGTACGAAGAT
ACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGGTGAGCAACGGGTT
GCTGCTGGTTCTGCACATATATGCAGATGAATACCCACTGTTAATGTAGT
ACCGGATATATCAGTATTTGGGAGAATTGTCTGCGATTTTACGCCACGAC
TGCGTTCCGTAATGCGAGCAATCGCGATAATAGAAATGCTGTAGAGTCTA
CAGCGGTACCTTGTACATTGATTGACAAAATCAAATTAAAAATGAACCGC
TCTACAGATTTATATATAAAAATTATTCCCGCAATATGCTGTACCAGTAC
TTGATTCGAGCGCGCCACAGATACATTTTGTGCTAGACTCATTCGTGTAG
CTATATCCCAACAACTTTGCCACAGCAGTAATATACCAAGTTTTTAACAT
TTGAACAACAAAAACTTGTATCTTGCTGAGTTGAGGTATCTGTGCTCATC
AGCTGTTGTAAGCCGGAGGCTTGACGAGCTTGTTTGTGACGCAAGCACGA
AAGACGTTAACTTGTTAATGTTTCGCGCTCTCTGGTCGCCGACACAGGGC
CTTCCTGGACCAACAGACGGTAAACATAAAAAGTCAGTCAGCGAGGACAA
AGCAATATCAGCGGATAAAGACGTGGAGAGTGACTCAGAAGTTCTAATCG
CCATCAAGCGATGTTGGCCGGTAACCAAGGACGGCGCTGCAGTAGCCGAC
TCTGATGACGCCGTAAGGCGTAATCACAGCACGAAAGCAATCTTGTCCGA
GACTGAAAAGATCTGTGGTCCTATGACTAATGGAAATACTCTTGACTCCG
ATTCCGACGACGAGGATGGTGATGAGCTCGAGGAAAGTCTGCCTGCATAT
ACAGAGAAGAACGACGTGGGCGACGGGTCAAGTGATATCACTGTCTGTGG
CGACAGTCCAAACATCTCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGA
TCCCTGGCAAAAACAAACCGTACGATCTGTGGCCTCAACAGTATCTTCGC
ATGGCTTGCAGGAATCGGGGCATTGCCAGCATGTCCAAGAGCACCGACAA
GGGCAGGATGTCCGAGCTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGA
AGACCCCATACCTTGAGGATTTCATGATGGAGAACGGTAAGTACTCGTGT
GTTGGAAATATACGAAAGGCTATAAAGGATGTACTCAGCGACGTTTGTGT
TTGCGTAATGAGAAGCGAATGAGAGACAAACTGCTCTTGTCGGAAGGATG
CTACTGCTACTTCGGGTTATTTGCATATGCGTTGTTTGAAACCGAGATTA
TGATAATATTTTCGTGTTCTTGCGTGATATAATTTTCTTCGCTGTAGCTG
CTGGTCATCGTTGAGTCGAGGCGCGTTTTTCTAAGATATGAAACCATTTT
CTGCCGACTTCGCTTTAGCTTCGTCGGCCGCCTTAGCCAACTAAAATTAT
ATGCGTACTATTTAATGCGAACAGGTCGAGATGCGTGTCGGGCTGAGCTA
CCCGACAGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGG
CGGGGTAGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCC
GAGAGCGTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAG
GAAGAGGTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGT
CCTCGGACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCA
TGGAAGGAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTAC
CACGAGGACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCAT
TCAAGCGCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGA
AAACCGCCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCC
ATTCAAGTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGA
CATGATGGAGGCAGAGTCTTGACGCTAATAGTTAAGGAGCTTACATGGTT
TTATGTTAGTATGTATTCGGACGTTCGCTTTCACTCCCTTATCCAACGTG
GACGCAGGATGGGAACTTTATTTGTTTTTGTTTATAGTCTAAGATGATGA
AATCGAAGGGGGTGGAGAGTGGTATGTTGGTCTTGTCGGGACGACGAGTC
CGCTTCAATGATGGCCTTTTCGCGTGAAGACCGATTAACTCCGATGATTA
CTTCCTATATTTAGAGATA
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Coding sequence (CDS) from alignment at H-elongata_contig10335:1452..4620+

>mRNA_H-elongata_contig10335.277.1 ID=mRNA_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2466bp|location=Sequence derived from alignment at H-elongata_contig10335:1452..4620+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGCAGACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGAC
GTACGAAGATACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGATGG
GAGCAGACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGACGTAC
GAAGATACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGGGCCTTCC
TGGACCAACAGACGGTAAACATAAAAAGTCAGTCAGCGAGGACAAAGCAA
TATCAGCGGATAAAGACGTGGAGAGTGACTCAGAAGTTCTAATCGCCATC
AAGCGATGTTGGCCGGTAACCAAGGACGGCGCTGCAGTAGCCGACTCTGA
TGACGCCGTAAGGCGTAATCACAGCACGAAAGCAATCTTGTCCGAGACTG
AAAAGATCTGTGGTCCTATGACTAATGGAAATACTCTTGACTCCGATTCC
GACGACGAGGATGGTGATGAGCTCGAGGAAAGTCTGCCTGCATATACAGA
GAAGAACGACGTGGGCGACGGGTCAAGTGATATCACTGTCTGTGGCGACA
GTCCAAACATCTCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGATCCCT
GGCAAAAACAAACCGTACGATCTGTGGCCTCAACAGTATCTTCGCATGGC
TTGCAGGAATCGGGGCATTGCCAGCATGTCCAAGAGCACCGACAAGGGCA
GGATGTCCGAGCTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGAAGACC
CCATACCTTGAGGATTTCATGATGGAGAACGGGCCTTCCTGGACCAACAG
ACGGTAAACATAAAAAGTCAGTCAGCGAGGACAAAGCAATATCAGCGGAT
AAAGACGTGGAGAGTGACTCAGAAGTTCTAATCGCCATCAAGCGATGTTG
GCCGGTAACCAAGGACGGCGCTGCAGTAGCCGACTCTGATGACGCCGTAA
GGCGTAATCACAGCACGAAAGCAATCTTGTCCGAGACTGAAAAGATCTGT
GGTCCTATGACTAATGGAAATACTCTTGACTCCGATTCCGACGACGAGGA
TGGTGATGAGCTCGAGGAAAGTCTGCCTGCATATACAGAGAAGAACGACG
TGGGCGACGGGTCAAGTGATATCACTGTCTGTGGCGACAGTCCAAACATC
TCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGATCCCTGGCAAAAACAA
ACCGTACGATCTGTGGCCTCAACAGTATCTTCGCATGGCTTGCAGGAATC
GGGGCATTGCCAGCATGTCCAAGAGCACCGACAAGGGCAGGATGTCCGAG
CTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGAAGACCCCATACCTTGA
GGATTTCATGATGGAGAACGGTCGAGATGCGTGTCGGGCTGAGCTACCCG
ACAGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGGCGGG
GTAGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCCGAGA
GCGTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAGGAAG
AGGTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGTCCTC
GGACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCATGGA
AGGAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTACCACG
AGGACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCATTCAA
GCGCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGAAAAC
CGCCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCCATTC
AAGTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGACATG
ATGGAGGCAGAGTCTTGAGTCGAGATGCGTGTCGGGCTGAGCTACCCGAC
AGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGGCGGGGT
AGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCCGAGAGC
GTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAGGAAGAG
GTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGTCCTCGG
ACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCATGGAAG
GAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTACCACGAG
GACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCATTCAAGC
GCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGAAAACCG
CCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCCATTCAA
GTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGACATGAT
GGAGGCAGAGTCTTGA
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