Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2320 |
Cds size | 1233 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929568.5913296-UTR-H-elongata_contig10335:1451..2291 | 1622929568.5913296-UTR-H-elongata_contig10335:1451..2291 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10335 1452..2291 + |
1691679074.0967662-UTR-H-elongata_contig10335:1451..2291 | 1691679074.0967662-UTR-H-elongata_contig10335:1451..2291 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10335 1452..2291 + |
1622929568.668652-UTR-H-elongata_contig10335:4373..4620 | 1622929568.668652-UTR-H-elongata_contig10335:4373..4620 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10335 4374..4620 + |
1691679074.1282744-UTR-H-elongata_contig10335:4373..4620 | 1691679074.1282744-UTR-H-elongata_contig10335:4373..4620 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10335 4374..4620 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929568.6122093-CDS-H-elongata_contig10335:2291..2387 | 1622929568.6122093-CDS-H-elongata_contig10335:2291..2387 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 2292..2387 + |
1691679074.1038544-CDS-H-elongata_contig10335:2291..2387 | 1691679074.1038544-CDS-H-elongata_contig10335:2291..2387 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 2292..2387 + |
1622929568.6279063-CDS-H-elongata_contig10335:2898..3487 | 1622929568.6279063-CDS-H-elongata_contig10335:2898..3487 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 2899..3487 + |
1691679074.1111555-CDS-H-elongata_contig10335:2898..3487 | 1691679074.1111555-CDS-H-elongata_contig10335:2898..3487 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 2899..3487 + |
1622929568.643386-CDS-H-elongata_contig10335:3825..4373 | 1622929568.643386-CDS-H-elongata_contig10335:3825..4373 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 3826..4373 + |
1691679074.1206818-CDS-H-elongata_contig10335:3825..4373 | 1691679074.1206818-CDS-H-elongata_contig10335:3825..4373 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10335 3826..4373 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10335.277.1 >prot_H-elongata_contig10335.277.1 ID=prot_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=411bp
MGADRIRKKRRSQRPLTYEDTTPQPRWSATDEGLPGPTDGKHKKSVSEDK AISADKDVESDSEVLIAIKRCWPVTKDGAAVADSDDAVRRNHSTKAILSE TEKICGPMTNGNTLDSDSDDEDGDELEESLPAYTEKNDVGDGSSDITVCG DSPNISRSEGVMYVRKIPGKNKPYDLWPQQYLRMACRNRGIASMSKSTDK GRMSELLSALDKQKNRKTPYLEDFMMENGRDACRAELPDSQGREETGVEG VRPGGVAGDARKRKEASVNGRERAEKHGGSRKKQRLEEEVKRNAKIVANE TLSVLGPALAQILSPSRPGTMEGGEPEHSTWVTEAKYHEDIARSEAESSK LKLIQARKEANFVLMKRYTEKTAELAEAKRDGTDPFAIQVLEHFVKSLTK ELADMMEAES* back to topmRNA from alignment at H-elongata_contig10335:1452..4620+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10335.277.1 ID=mRNA_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3169bp|location=Sequence derived from alignment at H-elongata_contig10335:1452..4620+ (Himanthalia elongata Himel1 dioecious) CAAAGCTAATTTGAGGTCCCGGCGCCTTCGATAAGCCCGTTCTTATTGCC
GCTGGCGATAAGGAAGCCTCATCTTGCACAGCTTGAGCTAACCTCTTCAG
AGCCAGGGGCTTGATGAGCGTGTCAGTGACGCAGGCCTAAAGAAGAGCGA
CTAGCTTCTTAAGGTATGCCTCTTCATGCGACATTTCCTGTGAAAATTCC
CTTCCCTCTCGGAATTGTCTCCGGGATCGACCCAACAAAGCCTCTCCTGT
GTGATAGCTGTCCTTTTCACCTCCGGCGGCCGAATCCAACGCTAACGCTG
CGACTGCCGTACGCAATGCTAATTTGGGGTCCCGGTGCCTTCGAGAAGCC
TGCTCTTGTTGTCGCTGGCGATAAGGTAGCCTCATCTTGCACAGCTTGAG
CTAACATATCCTTATTTTCTTCTACTGTAAACTGAGACAAGACTGTCTAC
AGCGGTTGCAACACCAGGAGCATGTTTCCAAACTTTTCGAATGTGGAAAT
GGACAAACAGCGACCTCGAGGTGCTTGCCCATTTCTCAATTTTGGAAGTG
GAAATTTGGAAAGTTTGGAAAATATTCCAAAATTTTCATTTTGTTTTTAT
AAGAGCCGTTTTAGACCGGAATAAATGTTTCCAATAAAAAACACTTTCCA
AAATTGAAAAATTTATAAAATCATTCTAGGCCTATTATGTCAGCAGTTGA
AGTGAATATTTGGAAAAAAGAACCCCGCTTTCAATAGTATAATAGGGCTC
GGGACAGTTTGAACACATTTTTCGGGTCCTAGAACCCTCAAGAACGACAC
AGACAAAATTTTCAAAGACCGCCGCAGTAGATATCAGTAGATGGGAGCAG
ACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGACGTACGAAGAT
ACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGGTGAGCAACGGGTT
GCTGCTGGTTCTGCACATATATGCAGATGAATACCCACTGTTAATGTAGT
ACCGGATATATCAGTATTTGGGAGAATTGTCTGCGATTTTACGCCACGAC
TGCGTTCCGTAATGCGAGCAATCGCGATAATAGAAATGCTGTAGAGTCTA
CAGCGGTACCTTGTACATTGATTGACAAAATCAAATTAAAAATGAACCGC
TCTACAGATTTATATATAAAAATTATTCCCGCAATATGCTGTACCAGTAC
TTGATTCGAGCGCGCCACAGATACATTTTGTGCTAGACTCATTCGTGTAG
CTATATCCCAACAACTTTGCCACAGCAGTAATATACCAAGTTTTTAACAT
TTGAACAACAAAAACTTGTATCTTGCTGAGTTGAGGTATCTGTGCTCATC
AGCTGTTGTAAGCCGGAGGCTTGACGAGCTTGTTTGTGACGCAAGCACGA
AAGACGTTAACTTGTTAATGTTTCGCGCTCTCTGGTCGCCGACACAGGGC
CTTCCTGGACCAACAGACGGTAAACATAAAAAGTCAGTCAGCGAGGACAA
AGCAATATCAGCGGATAAAGACGTGGAGAGTGACTCAGAAGTTCTAATCG
CCATCAAGCGATGTTGGCCGGTAACCAAGGACGGCGCTGCAGTAGCCGAC
TCTGATGACGCCGTAAGGCGTAATCACAGCACGAAAGCAATCTTGTCCGA
GACTGAAAAGATCTGTGGTCCTATGACTAATGGAAATACTCTTGACTCCG
ATTCCGACGACGAGGATGGTGATGAGCTCGAGGAAAGTCTGCCTGCATAT
ACAGAGAAGAACGACGTGGGCGACGGGTCAAGTGATATCACTGTCTGTGG
CGACAGTCCAAACATCTCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGA
TCCCTGGCAAAAACAAACCGTACGATCTGTGGCCTCAACAGTATCTTCGC
ATGGCTTGCAGGAATCGGGGCATTGCCAGCATGTCCAAGAGCACCGACAA
GGGCAGGATGTCCGAGCTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGA
AGACCCCATACCTTGAGGATTTCATGATGGAGAACGGTAAGTACTCGTGT
GTTGGAAATATACGAAAGGCTATAAAGGATGTACTCAGCGACGTTTGTGT
TTGCGTAATGAGAAGCGAATGAGAGACAAACTGCTCTTGTCGGAAGGATG
CTACTGCTACTTCGGGTTATTTGCATATGCGTTGTTTGAAACCGAGATTA
TGATAATATTTTCGTGTTCTTGCGTGATATAATTTTCTTCGCTGTAGCTG
CTGGTCATCGTTGAGTCGAGGCGCGTTTTTCTAAGATATGAAACCATTTT
CTGCCGACTTCGCTTTAGCTTCGTCGGCCGCCTTAGCCAACTAAAATTAT
ATGCGTACTATTTAATGCGAACAGGTCGAGATGCGTGTCGGGCTGAGCTA
CCCGACAGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGG
CGGGGTAGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCC
GAGAGCGTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAG
GAAGAGGTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGT
CCTCGGACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCA
TGGAAGGAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTAC
CACGAGGACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCAT
TCAAGCGCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGA
AAACCGCCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCC
ATTCAAGTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGA
CATGATGGAGGCAGAGTCTTGACGCTAATAGTTAAGGAGCTTACATGGTT
TTATGTTAGTATGTATTCGGACGTTCGCTTTCACTCCCTTATCCAACGTG
GACGCAGGATGGGAACTTTATTTGTTTTTGTTTATAGTCTAAGATGATGA
AATCGAAGGGGGTGGAGAGTGGTATGTTGGTCTTGTCGGGACGACGAGTC
CGCTTCAATGATGGCCTTTTCGCGTGAAGACCGATTAACTCCGATGATTA
CTTCCTATATTTAGAGATA back to topCoding sequence (CDS) from alignment at H-elongata_contig10335:1452..4620+ >mRNA_H-elongata_contig10335.277.1 ID=mRNA_H-elongata_contig10335.277.1|Name=mRNA_H-elongata_contig10335.277.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2466bp|location=Sequence derived from alignment at H-elongata_contig10335:1452..4620+ (Himanthalia elongata Himel1 dioecious) ATGGGAGCAGACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGAC GTACGAAGATACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGATGG GAGCAGACCGTATTCGCAAGAAGAGGCGCTCACAAAGGCCATTGACGTAC GAAGATACGACACCTCAGCCCCGCTGGTCAGCAACAGACGAGGGCCTTCC TGGACCAACAGACGGTAAACATAAAAAGTCAGTCAGCGAGGACAAAGCAA TATCAGCGGATAAAGACGTGGAGAGTGACTCAGAAGTTCTAATCGCCATC AAGCGATGTTGGCCGGTAACCAAGGACGGCGCTGCAGTAGCCGACTCTGA TGACGCCGTAAGGCGTAATCACAGCACGAAAGCAATCTTGTCCGAGACTG AAAAGATCTGTGGTCCTATGACTAATGGAAATACTCTTGACTCCGATTCC GACGACGAGGATGGTGATGAGCTCGAGGAAAGTCTGCCTGCATATACAGA GAAGAACGACGTGGGCGACGGGTCAAGTGATATCACTGTCTGTGGCGACA GTCCAAACATCTCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGATCCCT GGCAAAAACAAACCGTACGATCTGTGGCCTCAACAGTATCTTCGCATGGC TTGCAGGAATCGGGGCATTGCCAGCATGTCCAAGAGCACCGACAAGGGCA GGATGTCCGAGCTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGAAGACC CCATACCTTGAGGATTTCATGATGGAGAACGGGCCTTCCTGGACCAACAG ACGGTAAACATAAAAAGTCAGTCAGCGAGGACAAAGCAATATCAGCGGAT AAAGACGTGGAGAGTGACTCAGAAGTTCTAATCGCCATCAAGCGATGTTG GCCGGTAACCAAGGACGGCGCTGCAGTAGCCGACTCTGATGACGCCGTAA GGCGTAATCACAGCACGAAAGCAATCTTGTCCGAGACTGAAAAGATCTGT GGTCCTATGACTAATGGAAATACTCTTGACTCCGATTCCGACGACGAGGA TGGTGATGAGCTCGAGGAAAGTCTGCCTGCATATACAGAGAAGAACGACG TGGGCGACGGGTCAAGTGATATCACTGTCTGTGGCGACAGTCCAAACATC TCAAGGTCTGAAGGAGTTATGTACGTTCGCAAGATCCCTGGCAAAAACAA ACCGTACGATCTGTGGCCTCAACAGTATCTTCGCATGGCTTGCAGGAATC GGGGCATTGCCAGCATGTCCAAGAGCACCGACAAGGGCAGGATGTCCGAG CTTCTTAGCGCGTTGGATAAGCAGAAGAATAGGAAGACCCCATACCTTGA GGATTTCATGATGGAGAACGGTCGAGATGCGTGTCGGGCTGAGCTACCCG ACAGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGGCGGG GTAGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCCGAGA GCGTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAGGAAG AGGTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGTCCTC GGACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCATGGA AGGAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTACCACG AGGACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCATTCAA GCGCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGAAAAC CGCCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCCATTC AAGTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGACATG ATGGAGGCAGAGTCTTGAGTCGAGATGCGTGTCGGGCTGAGCTACCCGAC AGTCAGGGACGAGAGGAAACCGGGGTAGAGGGAGTCCGACCGGGCGGGGT AGCGGGTGATGCGCGCAAACGCAAGGAAGCGTCCGTGAATGGCCGAGAGC GTGCAGAGAAACACGGAGGGTCGAGAAAGAAGCAGAGATTAGAGGAAGAG GTTAAGCGTAACGCAAAGATTGTCGCGAATGAGACCCTTTCCGTCCTCGG ACCGGCGTTAGCTCAAATACTTTCGCCATCTCGTCCAGGAACCATGGAAG GAGGGGAGCCGGAACATTCAACATGGGTCACGGAAGCGAAGTACCACGAG GACATCGCCCGCTCTGAAGCCGAGTCATCGAAATTAAAACTCATTCAAGC GCGTAAAGAGGCGAATTTTGTTTTAATGAAGCGATACACGGAGAAAACCG CCGAACTTGCGGAGGCAAAGAGAGACGGGACCGATCCGTTCGCCATTCAA GTCCTGGAGCACTTTGTCAAGAGCTTGACGAAGGAGCTCGCAGACATGAT GGAGGCAGAGTCTTGA back to top
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