mRNA_H-elongata_contig103344.276.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI) HSP 1 Score: 340 bits (871), Expect = 2.420e-104 Identity = 169/208 (81.25%), Postives = 188/208 (90.38%), Query Frame = 1 Query: 19 QLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFT-EAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEAAGK 639 ++LDIKDWTDALKGGLPPVKLPK+VFGTAGCYSFMEEKLRP LEYEDLKAGVFQDFRE GNALAFL+CLSEA+AG+DCLKFV TVP+MGL SSKKWDPKRTRL+AATTALI+ ADFT EA ASL GLE AVLEGQ ACKGL+T ASIFRHTLGEL ALD+L LR+ WAG +P+NGV+DVE+S++FSRLFSALNFLFCMPEA G+ Sbjct: 1023 KMLDIKDWTDALKGGLPPVKLPKYVFGTAGCYSFMEEKLRPFLEYEDLKAGVFQDFREFGNALAFLQCLSEASAGLDCLKFVQTVPVMGLSSSKKWDPKRTRLVAATTALIR---GADFTGEAGASLSGLEDAVLEGQAACKGLSTSASIFRHTLGELSTALDVLRLREAWAGAQPANGVLDVEESVSFSRLFSALNFLFCMPEAKGE 1227
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE) HSP 1 Score: 331 bits (849), Expect = 2.260e-101 Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 1 Query: 19 QLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFT-EAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEAAGK 639 ++LDIKDWTDALKGGLPPVKLPK+VFGTAGCYSFMEEKLRP LEYEDLKAGVFQDFRE GNALAFL+CLSEA+AG+DCLKFV TVP+MGL SSKKWDPKRTRL+AATTAL++ AD T EA ASL GLE AVLEGQ ACK L T ASIFRHTLGEL ALD+L LR+ W G +P NGV+DVE+S++FSRLFSALNFLFCMPEA G+ Sbjct: 729 KMLDIKDWTDALKGGLPPVKLPKYVFGTAGCYSFMEEKLRPFLEYEDLKAGVFQDFREFGNALAFLQCLSEASAGLDCLKFVQTVPVMGLSSSKKWDPKRTRLVAATTALVR---GADLTGEAGASLSGLEDAVLEGQAACKDLATSASIFRHTLGELSTALDVLRLREAWVGAQPVNGVLDVEESVSFSRLFSALNFLFCMPEAKGE 933
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A7S1UBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBW1_9STRA) HSP 1 Score: 149 bits (377), Expect = 3.750e-38 Identity = 91/218 (41.74%), Postives = 117/218 (53.67%), Query Frame = 1 Query: 10 NLFQLLD-IKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRA-----------SIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPE 627 NL LLD IK + DALK GLPP KLPKFV+G A CY F E KL+P LEYED+K VFQ RE+GN +AFL+ LSE + LKFV +G+ ++ AT + F +A S+V V E G RA S+F+ T+ ++ LD +R W P+NGVM+VE S F RL+SALNFL+C+ E Sbjct: 377 NLDHLLDSIKSYMDALKDGLPPCKLPKFVYGVAACYGFFEGKLKPFLEYEDMKPEVFQTLREIGNTVAFLKDLSEVIEATEGLKFVQAASFLGVSPEEQSFRSGAE---ATPYMRTMVGFCGFAQANPSVVKAPLVV----ETMLGSARRAVGMHEYLGRSRSLFKATMRAVNDMLDQKGMRQAWTNSSPANGVMEVEASNEFHRLWSALNFLYCISE 587
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A835YVZ9_9STRA (Cytoplasmic fragile-X interacting family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ9_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.070e-37 Identity = 87/216 (40.28%), Postives = 121/216 (56.02%), Query Frame = 1 Query: 1 MRFNLFQLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAA----TTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMA----FSRLFSALNFLFCMP 624 M++ +L D+ +W AL GLP + LP G AG Y+ E +L+P+LEY DL+ GVFQD RE+GNALAFL L + DCL FVH +PI+G+P+S+ W+ RTRLM A T A+ + ++ A+L +A GQEA S+F L LD A+ +R+ W G P +G+ + D F RL+SAL+F FC P Sbjct: 1077 MQYLESKLDDLLEWARALTPGLPSLALPSLSMGLAGAYAMFEVQLQPLLEYPDLRNGVFQDLREMGNALAFLFSLGKLMQVDDCLTFVHALPIIGVPTSRTWEGDRTRLMTAIGGITAAITGSGCPSGVAQSAATLTDSAKA---GQEAAAACALPQSLFGTALQRLDVAISASGIREEWQGG-PLDGLCEPADGAPPPPHFYRLWSALHFAFCQP 1288
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN) HSP 1 Score: 105 bits (262), Expect = 1.350e-22 Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 1 Query: 10 NLFQLLDI-KDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLM----AATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLF 615 NL + L+I K + DA+ GLPP KLPK ++G AGCY + L+PIL Y DLK VFQ F+E+GNAL F+ +S+ +D + +H + L S K P + L + T A+ + R + + ++G + R ++F L L + R W PSNGV+D+E + +F RL+SAL FLF Sbjct: 925 NLQERLEISKAYLDAITKGLPPCKLPKAMYGLAGCYGVFDALLKPILAYVDLKPEVFQAFKEVGNALFFIRDMSDVLDCIDLARGLHQFSWIPLADSYKPVPALSHLAIECHSLTCAMPEEQMRCVIPRGAVPELAVIAERIQGDMLSEA-DQRITLFWGALTHLSLLIQPF--RPGWTELLPSNGVLDLEATGSFHRLWSALGFLF 1128
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP) HSP 1 Score: 100 bits (248), Expect = 9.980e-21 Identity = 65/205 (31.71%), Postives = 99/205 (48.29%), Query Frame = 1 Query: 46 DALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL-PSSKKWDPKR----------TRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624 + ++ G+PP KLP + +GT G Y + + KL+ I Y DL+ V Q FRELGN++ F+ L +A D L F + P +G P S DP ++L + Q+ D E +VG + + S+F+ L + L+ N+R W+G P NGV++V+ S F RL+SAL F+ C P Sbjct: 936 ELIQSGMPPSQKLPIYDYGTEGGYGYFQLKLKDIYTYPDLRPEVIQCFRELGNSIVFMNLLDQALVQSDALIFTKSAPFLGFTPESWYQDPTGEDPTLQSPLYSQLQKLAQLIEQKPDVTKVPEYFNEIVG---NAWRADKFYRPADNNTSLFKSVLQRISQILN--NVRSEWSGTAPDNGVINVDSSTEFYRLWSALQFVTCWP 1135
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A151ZAX9_9MYCE (Component of SCAR regulatory complex n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAX9_9MYCE) HSP 1 Score: 99.4 bits (246), Expect = 1.840e-20 Identity = 71/205 (34.63%), Postives = 101/205 (49.27%), Query Frame = 1 Query: 46 DALKGGLPP-VKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKW----DPKRTRLMAATTALIQRTDRADFTEAE----ASLVGLERAVLEGQEACKGLTTR---ASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624 + L G+PP KLP + +GT G Y + + KLR I Y DL+ V Q FRELGN L + L +A VD FV + P +G+ + + W + + L + A IQ+ A F E+ S L V A K +S+F+ L L+++ R WAG P NGV+ ++ S FSRL+SAL F+ C P Sbjct: 939 ELLANGMPPSTKLPIYDYGTEGGYGYFQLKLRDIYIYPDLRPEVLQCFRELGNTLILMNLLDQAVVQVDSFNFVKSAPFLGI-TPESWFQDQNGEDPTLQSPLYAQIQKL--AQFLESNPQGSTSNQVLNDIVANAWRADKFYRPNELNSSLFKSVLQRFSQLLNVV--RGEWAGQAPDNGVICIDSSTEFSRLWSALQFVICWP 1138
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A0D2WGK4_CAPO3 (Cytoplasmic FMR1-interacting protein 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WGK4_CAPO3) HSP 1 Score: 99.0 bits (245), Expect = 2.500e-20 Identity = 64/198 (32.32%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 40 WTDALKGGLP-PVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEA 630 + ++ G+P +K P F +GT G + + + L+PIL Y DLK VF FRELGN+L F L ++ D +V ++P + S P T + T T SL G RA + L R S+F L DA L +R+ W G RP+NG+++++++ F RL+S L F +C P A Sbjct: 944 YVESFMRGIPVDMKTPLFQYGTLGTFQYFQAHLKPILAYRDLKTEVFHVFRELGNSLIFARLLDQSMLQRDLFTYVQSLPFYTIDRSGVTVPSTTGQVDPTAFFKFVTTHLQGQPFSESLGG--RAEQASKLNAPSLA-RKSLFVRVLERFDALL--APVREKWRGSRPTNGILNIDETSEFYRLWSVLQFAYCTPGA 1136
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A8J9XX57_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9XX57_BRAAE) HSP 1 Score: 97.4 bits (241), Expect = 8.530e-20 Identity = 60/206 (29.13%), Postives = 102/206 (49.51%), Query Frame = 1 Query: 28 DIKDWTDALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL------PSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624 ++ +T L +P + KLP++ +G+ G +F +L IL+Y D K +F +FRE GN + F + +A + + + P + +K + K+ RL A AL + A+ +++ E +L + C GL SIF L L + LD W G P+NGVM++++ + F RL+SAL F++C+P Sbjct: 966 NLLQFTKTLMSAMPKICKLPRYDYGSPGVLAFYHAQLNDILQYPDAKTELFHNFREFGNTIIFCLLMEQALSQEEVCDLLQAAPFQNILPRPYCKEGEKLEVKQKRLEAKYAALQIVPNIEKLGTAKQAMISKEGDLLTRERLCCGL----SIFEVVLNRLKSFLD----DPVWVGPPPANGVMNIDECVEFHRLWSALQFVYCVP 1163
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A7G3AFU7_LUTLO (Putative cytoplasmic fmr1-interacting protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AFU7_LUTLO) HSP 1 Score: 97.1 bits (240), Expect = 1.120e-19 Identity = 61/208 (29.33%), Postives = 105/208 (50.48%), Query Frame = 1 Query: 28 DIKDWTDALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL------PSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEA 630 ++ +T L +P KLP+F +G+ G S+ L I++Y D K +FQ FRE GN++ F + +A + + +H P + +K + K+ RL + ++L ++ F A+ +++ E +L + C GL SIF LG + + +D W G P NGVM++++ F RL+SAL F++C+P A Sbjct: 705 NLLQFTKTLMSAMPKTCKLPRFDYGSPGVLSYYHAHLIDIVQYPDAKTELFQLFREFGNSIIFCLLIEQALSQEEVCDLLHAAPFQNILPRPYCKDGEKPETKQKRLESKYSSLQIVSNVEKFGTAKQAMIAREGDLLTRERLCCGL----SIFEVILGRVKSYMD----DPVWMGPPPINGVMNIDECSEFHRLWSALQFVYCIPVA 904 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103344.276.1 >prot_H-elongata_contig103344.276.1 ID=prot_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp MRFNLFQLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEback to top mRNA from alignment at H-elongata_contig103344:304..2063+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103344.276.1 ID=mRNA_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1760bp|location=Sequence derived from alignment at H-elongata_contig103344:304..2063+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103344:304..2063+ >mRNA_H-elongata_contig103344.276.1 ID=mRNA_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig103344:304..2063+ (Himanthalia elongata Himel1 dioecious)back to top |