mRNA_H-elongata_contig103307.273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103307.273.1
Unique NamemRNA_H-elongata_contig103307.273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A6H5KHP6_9PHAE (Transaldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP6_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 6.250e-51
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 2 
Query:   14 DRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            +RVEAAMD+LSV FGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALY+AAG+DKSRVLIKIASTWEGIRACEILQKEGI CNMTLLF + Q  A
Sbjct:  139 ERVEAAMDKLSVNFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYKAAGIDKSRVLIKIASTWEGIRACEILQKEGISCNMTLLFCMAQAVA 237
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: D7FVZ8_ECTSI (Transaldolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVZ8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.850e-49
Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 2 
Query:    5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            S  +RVEAAMD+LSV FGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALY+AAG+DKSRVLIKIASTWEGIRACEILQKEGI CNMTLLF + Q  A
Sbjct:  433 SPKERVEAAMDKLSVNFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYKAAGIDKSRVLIKIASTWEGIRACEILQKEGISCNMTLLFCMAQAVA 534
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A1C7PDB5_9BACT (Transaldolase n=2 Tax=Akkermansia glycaniphila TaxID=1679444 RepID=A0A1C7PDB5_9BACT)

HSP 1 Score: 146 bits (368), Expect = 5.660e-41
Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 2 
Query:   23 EAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            EA MDR+ V FGLEILK+VPG VSTEVDARLS+DTE+TVAK R I+ALYEA G+ + R+LIKIA+TWEGIRA EIL+KEGI CN+TLLFSL+Q  A
Sbjct:   71 EAVMDRVIVAFGLEILKVVPGRVSTEVDARLSFDTESTVAKAREIIALYEAKGISRDRILIKIAATWEGIRAAEILEKEGIHCNLTLLFSLIQAVA 166
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A7C6L4N1_9BACT (Transaldolase n=3 Tax=root TaxID=1 RepID=A0A7C6L4N1_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.100e-40
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 2 
Query:    2 ASENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            + +++R+  AMD+L+V FGLEILKIVPG  STEVDARLS+DTEATVAK R I+ LYE+AG+ + RVL+KIASTWEGI+A EI++KEGI CN+TLLFS VQ  A
Sbjct:   63 SDKSERLSKAMDKLAVNFGLEILKIVPGRASTEVDARLSFDTEATVAKAREIIGLYESAGISRERVLVKIASTWEGIKAAEIVEKEGIHCNLTLLFSQVQAIA 165
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A357I450_9BACT (Transaldolase n=2 Tax=Opitutae TaxID=414999 RepID=A0A357I450_9BACT)

HSP 1 Score: 144 bits (364), Expect = 2.190e-40
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 2 
Query:   14 DRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            +R++  +D L V FGL+IL+IVPG VSTEVDARLS+DTEAT+ K R ++ALYEAAG+ + RVLIKIASTWEGIRA E+LQKEGI+CNMTLLFSL Q  A
Sbjct:   68 ERIDLVIDHLLVGFGLKILEIVPGRVSTEVDARLSFDTEATIVKARELIALYEAAGIQRERVLIKIASTWEGIRAAEVLQKEGIRCNMTLLFSLAQAVA 166
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A662XW57_9STRA (Transaldolase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XW57_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.150e-40
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 2 
Query:    5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQ 301
            SE DR+   +D+LSV FGLEILKIVPGYVSTEVDARLS+DTEAT+A+   I+ LYE AG+ K R+LIKIASTWEGI+AC+ LQKEGI CNMTLLF   Q
Sbjct:   77 SEKDRLGYIIDKLSVNFGLEILKIVPGYVSTEVDARLSFDTEATIARAHRILELYEKAGITKDRILIKIASTWEGIQACKQLQKEGISCNMTLLFGFAQ 175
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: UPI00164B130F (transaldolase n=1 Tax=Undibacterium TaxID=401469 RepID=UPI00164B130F)

HSP 1 Score: 143 bits (361), Expect = 5.230e-40
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 2 
Query:    2 ASENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            A+++   +A +D+L + FGL+IL IVPG VSTE DARLS+DTEATVAKGR ++ALYEAAG+ + R+LIKIASTWEGIRA EIL+KEGI+CNMTLLF L Q  A
Sbjct:   57 ANKDKSTDAIIDQLLISFGLKILDIVPGRVSTETDARLSFDTEATVAKGRQLIALYEAAGIPRDRILIKIASTWEGIRAAEILEKEGIRCNMTLLFCLAQAVA 159
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A8K1CJ33_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ33_PYTOL)

HSP 1 Score: 144 bits (362), Expect = 6.120e-40
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 2 
Query:    5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            SE DR+   +D+LSV FGLEILKIVPGYVSTEVDARLS+DTEAT+ +   I+ LYE AG+ K R+LIKIASTWEGI+AC+ LQ+EGI CNMTLLF   Q  A
Sbjct:   76 SEEDRLAHIIDKLSVNFGLEILKIVPGYVSTEVDARLSFDTEATIERAHRIIKLYEDAGISKDRILIKIASTWEGIQACKHLQQEGISCNMTLLFGFAQAVA 177
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: TALDO_DICDI (Probable transaldolase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TALDO_DICDI)

HSP 1 Score: 143 bits (361), Expect = 6.590e-40
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 2 
Query:    5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            SE +++  A+D+L V FG+EILKIVPG VSTEVDARLSYD +A V KGR ++ALY+ AG+DK RVLIK+ASTWEGI A +IL+KEGI CN+TLLFSL+Q  A
Sbjct:   66 SEKEKLSLAIDKLFVNFGVEILKIVPGRVSTEVDARLSYDIDANVKKGRELIALYKEAGIDKERVLIKLASTWEGIEAAKILEKEGIHCNLTLLFSLIQAAA 167
[Close]
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A2D2DL68_9BURK (Transaldolase n=9 Tax=Massilia group TaxID=2895353 RepID=A0A2D2DL68_9BURK)

HSP 1 Score: 143 bits (360), Expect = 7.210e-40
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 2 
Query:   32 MDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
            +DR+ V+FG+EILKI+PG VSTE+DARLS+DTEATVAKGR ++ALYE AG  + RVLIKIASTWEGIRA EILQ+EGI+CNMTLLFSL Q  A
Sbjct:   67 IDRVLVEFGMEILKIIPGRVSTEIDARLSFDTEATVAKGRELIALYEEAGAGRERVLIKIASTWEGIRAAEILQEEGIRCNMTLLFSLAQAIA 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHP6_9PHAE6.250e-5188.89Transaldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FVZ8_ECTSI1.850e-4987.25Transaldolase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1C7PDB5_9BACT5.660e-4173.96Transaldolase n=2 Tax=Akkermansia glycaniphila Tax... [more]
A0A7C6L4N1_9BACT1.100e-4067.96Transaldolase n=3 Tax=root TaxID=1 RepID=A0A7C6L4N... [more]
A0A357I450_9BACT2.190e-4070.71Transaldolase n=2 Tax=Opitutae TaxID=414999 RepID=... [more]
A0A662XW57_9STRA3.150e-4071.72Transaldolase n=2 Tax=Nothophytophthora sp. Chile5... [more]
UPI00164B130F5.230e-4067.96transaldolase n=1 Tax=Undibacterium TaxID=401469 R... [more]
A0A8K1CJ33_PYTOL6.120e-4068.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
TALDO_DICDI6.590e-4067.65Probable transaldolase n=1 Tax=Dictyostelium disco... [more]
A0A2D2DL68_9BURK7.210e-4075.27Transaldolase n=9 Tax=Massilia group TaxID=2895353... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103307contigH-elongata_contig103307:1791..2301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D7FVZ8
Preferred nameTALDO1
KEGG rclassRC00439,RC00604
KEGG koko:K00616
KEGG ReactionR01827
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
GOsGO:0001300,GO:0003674,GO:0003824,GO:0004801,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005999,GO:0006002,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009052,GO:0009058,GO:0009117,GO:0009987,GO:0010033,GO:0016051,GO:0016740,GO:0016744,GO:0019221,GO:0019321,GO:0019322,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0023052,GO:0030246,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034097,GO:0034599,GO:0034641,GO:0035722,GO:0036094,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046483,GO:0046496,GO:0048029,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051156,GO:0051186,GO:0051716,GO:0055086,GO:0065007,GO:0070013,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901576
EggNOG free text desc.sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity
EggNOG OGsCOG0176@1,KOG2772@2759
Ec32 ortholog descriptionTransaldolase
Ec32 orthologEc-06_003940.1
EC2.2.1.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103307.273.1prot_H-elongata_contig103307.273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103307 1822..2301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.2230747-UTR-H-elongata_contig103307:1790..18211622929568.2230747-UTR-H-elongata_contig103307:1790..1821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103307 1791..1821 +
1691679073.948395-UTR-H-elongata_contig103307:1790..18211691679073.948395-UTR-H-elongata_contig103307:1790..1821Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103307 1791..1821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.2412844-CDS-H-elongata_contig103307:1821..19691622929568.2412844-CDS-H-elongata_contig103307:1821..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103307 1822..1969 +
1691679073.9603293-CDS-H-elongata_contig103307:1821..19691691679073.9603293-CDS-H-elongata_contig103307:1821..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103307 1822..1969 +
1622929568.2515974-CDS-H-elongata_contig103307:2170..23011622929568.2515974-CDS-H-elongata_contig103307:2170..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103307 2171..2301 +
1691679073.96924-CDS-H-elongata_contig103307:2170..23011691679073.96924-CDS-H-elongata_contig103307:2170..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103307 2171..2301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103307.273.1

>prot_H-elongata_contig103307.273.1 ID=prot_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAG
VDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA
back to top

mRNA from alignment at H-elongata_contig103307:1791..2301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103307.273.1 ID=mRNA_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=511bp|location=Sequence derived from alignment at H-elongata_contig103307:1791..2301+ (Himanthalia elongata Himel1 dioecious)
GGCTTCGGAAAACGACCGGGTGGAGGCAGCAATGGACCGTCTCTCGGTAA
AGTTCGGCCTCGAGATCCTCAAGATTGTTCCCGGGTACGTGTCCACCGAG
GTGGACGCCAGGCTCAGCTACGACACTGAAGCTACGGTTGCGAAGGGCAG
GAGCATCGTGGCTCTCTACGAGGCTGCCGGTGGGTGTATGCTAGTCTCGC
CGCCGCCTAGAGCGTAAGGGTTCTGGTTCGTGAGTTCCACAGATTATAAT
TGCAAAGGTCGTCGTCCCTCGGTCGTCTCTGTACGCAATAGTGCTCATCC
AGTGTGCCACTTTCTTCCGGCAGATGTTGACATGTAATCCCTCGTGTAAT
CCCCCGTGTGCTCTGCTCTCGTTGCGTTAGGCGTGGATAAGTCTCGGGTC
CTGATTAAGATCGCGAGTACTTGGGAGGGCATACGCGCGTGCGAGATCCT
TCAAAAGGAGGGCATCCAGTGCAACATGACCCTCCTCTTCTCCCTGGTCC
AGGTAACGGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig103307:1791..2301+

>mRNA_H-elongata_contig103307.273.1 ID=mRNA_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig103307:1791..2301+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGTCTCTCGGTAAAGTTCGGCCTCGAGATCCTCAAGATTGTTCC
CGGGTACGTGTCCACCGAGGTGGACGCCAGGCTCAGCTACGACACTGAAG
CTACGGTTGCGAAGGGCAGGAGCATCGTGGCTCTCTACGAGGCTGCCGAT
GGACCGTCTCTCGGTAAAGTTCGGCCTCGAGATCCTCAAGATTGTTCCCG
GGTACGTGTCCACCGAGGTGGACGCCAGGCTCAGCTACGACACTGAAGCT
ACGGTTGCGAAGGGCAGGAGCATCGTGGCTCTCTACGAGGCTGCCGGCGT
GGATAAGTCTCGGGTCCTGATTAAGATCGCGAGTACTTGGGAGGGCATAC
GCGCGTGCGAGATCCTTCAAAAGGAGGGCATCCAGTGCAACATGACCCTC
CTCTTCTCCCTGGTCCAGGTAACGGCAGCGTGGATAAGTCTCGGGTCCTG
ATTAAGATCGCGAGTACTTGGGAGGGCATACGCGCGTGCGAGATCCTTCA
AAAGGAGGGCATCCAGTGCAACATGACCCTCCTCTTCTCCCTGGTCCAGG
TAACGGCA
back to top