mRNA_H-elongata_contig103307.273.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A6H5KHP6_9PHAE (Transaldolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP6_9PHAE) HSP 1 Score: 174 bits (441), Expect = 6.250e-51 Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 2 Query: 14 DRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
+RVEAAMD+LSV FGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALY+AAG+DKSRVLIKIASTWEGIRACEILQKEGI CNMTLLF + Q A
Sbjct: 139 ERVEAAMDKLSVNFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYKAAGIDKSRVLIKIASTWEGIRACEILQKEGISCNMTLLFCMAQAVA 237
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: D7FVZ8_ECTSI (Transaldolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVZ8_ECTSI) HSP 1 Score: 175 bits (444), Expect = 1.850e-49 Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 2 Query: 5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
S +RVEAAMD+LSV FGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALY+AAG+DKSRVLIKIASTWEGIRACEILQKEGI CNMTLLF + Q A
Sbjct: 433 SPKERVEAAMDKLSVNFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYKAAGIDKSRVLIKIASTWEGIRACEILQKEGISCNMTLLFCMAQAVA 534
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A1C7PDB5_9BACT (Transaldolase n=2 Tax=Akkermansia glycaniphila TaxID=1679444 RepID=A0A1C7PDB5_9BACT) HSP 1 Score: 146 bits (368), Expect = 5.660e-41 Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 23 EAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
EA MDR+ V FGLEILK+VPG VSTEVDARLS+DTE+TVAK R I+ALYEA G+ + R+LIKIA+TWEGIRA EIL+KEGI CN+TLLFSL+Q A
Sbjct: 71 EAVMDRVIVAFGLEILKVVPGRVSTEVDARLSFDTESTVAKAREIIALYEAKGISRDRILIKIAATWEGIRAAEILEKEGIHCNLTLLFSLIQAVA 166
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A7C6L4N1_9BACT (Transaldolase n=3 Tax=root TaxID=1 RepID=A0A7C6L4N1_9BACT) HSP 1 Score: 145 bits (366), Expect = 1.100e-40 Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 2 ASENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
+ +++R+ AMD+L+V FGLEILKIVPG STEVDARLS+DTEATVAK R I+ LYE+AG+ + RVL+KIASTWEGI+A EI++KEGI CN+TLLFS VQ A
Sbjct: 63 SDKSERLSKAMDKLAVNFGLEILKIVPGRASTEVDARLSFDTEATVAKAREIIGLYESAGISRERVLVKIASTWEGIKAAEIVEKEGIHCNLTLLFSQVQAIA 165
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A357I450_9BACT (Transaldolase n=2 Tax=Opitutae TaxID=414999 RepID=A0A357I450_9BACT) HSP 1 Score: 144 bits (364), Expect = 2.190e-40 Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 2 Query: 14 DRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
+R++ +D L V FGL+IL+IVPG VSTEVDARLS+DTEAT+ K R ++ALYEAAG+ + RVLIKIASTWEGIRA E+LQKEGI+CNMTLLFSL Q A
Sbjct: 68 ERIDLVIDHLLVGFGLKILEIVPGRVSTEVDARLSFDTEATIVKARELIALYEAAGIQRERVLIKIASTWEGIRAAEVLQKEGIRCNMTLLFSLAQAVA 166
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A662XW57_9STRA (Transaldolase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XW57_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.150e-40 Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 2 Query: 5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQ 301
SE DR+ +D+LSV FGLEILKIVPGYVSTEVDARLS+DTEAT+A+ I+ LYE AG+ K R+LIKIASTWEGI+AC+ LQKEGI CNMTLLF Q
Sbjct: 77 SEKDRLGYIIDKLSVNFGLEILKIVPGYVSTEVDARLSFDTEATIARAHRILELYEKAGITKDRILIKIASTWEGIQACKQLQKEGISCNMTLLFGFAQ 175
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: UPI00164B130F (transaldolase n=1 Tax=Undibacterium TaxID=401469 RepID=UPI00164B130F) HSP 1 Score: 143 bits (361), Expect = 5.230e-40 Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 2 Query: 2 ASENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
A+++ +A +D+L + FGL+IL IVPG VSTE DARLS+DTEATVAKGR ++ALYEAAG+ + R+LIKIASTWEGIRA EIL+KEGI+CNMTLLF L Q A
Sbjct: 57 ANKDKSTDAIIDQLLISFGLKILDIVPGRVSTETDARLSFDTEATVAKGRQLIALYEAAGIPRDRILIKIASTWEGIRAAEILEKEGIRCNMTLLFCLAQAVA 159
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A8K1CJ33_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ33_PYTOL) HSP 1 Score: 144 bits (362), Expect = 6.120e-40 Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 2 Query: 5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
SE DR+ +D+LSV FGLEILKIVPGYVSTEVDARLS+DTEAT+ + I+ LYE AG+ K R+LIKIASTWEGI+AC+ LQ+EGI CNMTLLF Q A
Sbjct: 76 SEEDRLAHIIDKLSVNFGLEILKIVPGYVSTEVDARLSFDTEATIERAHRIIKLYEDAGISKDRILIKIASTWEGIQACKHLQQEGISCNMTLLFGFAQAVA 177
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: TALDO_DICDI (Probable transaldolase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TALDO_DICDI) HSP 1 Score: 143 bits (361), Expect = 6.590e-40 Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 2 Query: 5 SENDRVEAAMDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
SE +++ A+D+L V FG+EILKIVPG VSTEVDARLSYD +A V KGR ++ALY+ AG+DK RVLIK+ASTWEGI A +IL+KEGI CN+TLLFSL+Q A
Sbjct: 66 SEKEKLSLAIDKLFVNFGVEILKIVPGRVSTEVDARLSYDIDANVKKGRELIALYKEAGIDKERVLIKLASTWEGIEAAKILEKEGIHCNLTLLFSLIQAAA 167
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Match: A0A2D2DL68_9BURK (Transaldolase n=9 Tax=Massilia group TaxID=2895353 RepID=A0A2D2DL68_9BURK) HSP 1 Score: 143 bits (360), Expect = 7.210e-40 Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 2 Query: 32 MDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGVDKSRVLIKIASTWEGIRACEILQKEGIQCNMTLLFSLVQVTA 310
+DR+ V+FG+EILKI+PG VSTE+DARLS+DTEATVAKGR ++ALYE AG + RVLIKIASTWEGIRA EILQ+EGI+CNMTLLFSL Q A
Sbjct: 67 IDRVLVEFGMEILKIIPGRVSTEIDARLSFDTEATVAKGRELIALYEEAGAGRERVLIKIASTWEGIRAAEILQEEGIRCNMTLLFSLAQAIA 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103307.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103307.273.1 >prot_H-elongata_contig103307.273.1 ID=prot_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp MDRLSVKFGLEILKIVPGYVSTEVDARLSYDTEATVAKGRSIVALYEAAGback to top mRNA from alignment at H-elongata_contig103307:1791..2301+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103307.273.1 ID=mRNA_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=511bp|location=Sequence derived from alignment at H-elongata_contig103307:1791..2301+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103307:1791..2301+ >mRNA_H-elongata_contig103307.273.1 ID=mRNA_H-elongata_contig103307.273.1|Name=mRNA_H-elongata_contig103307.273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig103307:1791..2301+ (Himanthalia elongata Himel1 dioecious)back to top |