mRNA_H-elongata_contig103170.266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103170.266.1
Unique NamemRNA_H-elongata_contig103170.266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103170.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103170contigH-elongata_contig103170:661..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.665073-CDS-H-elongata_contig103170:660..9861622929567.665073-CDS-H-elongata_contig103170:660..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103170 661..986 +
1691679073.6554842-CDS-H-elongata_contig103170:660..9861691679073.6554842-CDS-H-elongata_contig103170:660..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103170 661..986 +
1622929567.6766243-CDS-H-elongata_contig103170:1001..12661622929567.6766243-CDS-H-elongata_contig103170:1001..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103170 1002..1266 +
1691679073.665023-CDS-H-elongata_contig103170:1001..12661691679073.665023-CDS-H-elongata_contig103170:1001..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103170 1002..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103170.266.1prot_H-elongata_contig103170.266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103170 661..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103170.266.1

>prot_H-elongata_contig103170.266.1 ID=prot_H-elongata_contig103170.266.1|Name=mRNA_H-elongata_contig103170.266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
EIVYFVPKICASLKSSRMPSYGMLGGGTSKGCAQHTLDGMPDVFASISTG
NGCSKQPCYEMVSSEIREHCVEDALKGMATCAKYASEDIANVSGKMCADY
GCSKHPSYRKPEYCAIHAYEGMTCVGLKKCADDEPYKKPIYGMAGRKRPK
YCAEHSSTGIVNVTRESAGDGCSRPKNYDVAGIIKAEHCTEHAVEGI
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mRNA from alignment at H-elongata_contig103170:661..1268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103170.266.1 ID=mRNA_H-elongata_contig103170.266.1|Name=mRNA_H-elongata_contig103170.266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig103170:661..1268+ (Himanthalia elongata Himel1 dioecious)
GAGATTGTCTACTTTGTTCCGAAAATTTGTGCCAGCCTCAAATCCTCTAG
AATGCCGAGTTACGGGATGCTCGGAGGCGGCACATCGAAGGGTTGCGCGC
AACATACTTTGGATGGGATGCCCGATGTTTTTGCAAGTATATCTACCGGC
AATGGGTGCTCTAAGCAACCGTGCTACGAGATGGTGAGCAGCGAGATCCG
AGAGCACTGCGTCGAGGATGCCTTAAAGGGGATGGCTACCTGCGCTAAGT
ATGCATCTGAGGATATAGCCAATGTTTCGGGCAAAATGTGTGCCGACTAT
GGATGCTCTAAGCACCCGAGCTACAGGAAAAATGGTACGGTGAAGCCGGA
GTACTGCGCGATACATGCTTATGAGGGGATGACTTGTGTTGGTTTGAAGA
AATGCGCCGACGATGAACCCTATAAAAAGCCAATTTACGGGATGGCTGGC
AGAAAGAGGCCCAAATATTGCGCTGAGCATTCCTCTACAGGAATCGTTAA
CGTTACAAGGGAGAGTGCGGGGGATGGATGCTCGAGGCCGAAAAATTATG
ACGTGGCCGGCATAATCAAAGCCGAGCACTGCACTGAGCATGCTGTCGAG
GGAATTAT
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Coding sequence (CDS) from alignment at H-elongata_contig103170:661..1268+

>mRNA_H-elongata_contig103170.266.1 ID=mRNA_H-elongata_contig103170.266.1|Name=mRNA_H-elongata_contig103170.266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig103170:661..1268+ (Himanthalia elongata Himel1 dioecious)
GAGATTGTCTACTTTGTTCCGAAAATTTGTGCCAGCCTCAAATCCTCTAG
AATGCCGAGTTACGGGATGCTCGGAGGCGGCACATCGAAGGGTTGCGCGC
AACATACTTTGGATGGGATGCCCGATGTTTTTGCAAGTATATCTACCGGC
AATGGGTGCTCTAAGCAACCGTGCTACGAGATGGTGAGCAGCGAGATCCG
AGAGCACTGCGTCGAGGATGCCTTAAAGGGGATGGCTACCTGCGCTAAGT
ATGCATCTGAGGATATAGCCAATGTTTCGGGCAAAATGTGTGCCGACTAT
GGATGCTCTAAGCACCCGAGCTACAGGAGATTGTCTACTTTGTTCCGAAA
ATTTGTGCCAGCCTCAAATCCTCTAGAATGCCGAGTTACGGGATGCTCGG
AGGCGGCACATCGAAGGGTTGCGCGCAACATACTTTGGATGGGATGCCCG
ATGTTTTTGCAAGTATATCTACCGGCAATGGGTGCTCTAAGCAACCGTGC
TACGAGATGGTGAGCAGCGAGATCCGAGAGCACTGCGTCGAGGATGCCTT
AAAGGGGATGGCTACCTGCGCTAAGTATGCATCTGAGGATATAGCCAATG
TTTCGGGCAAAATGTGTGCCGACTATGGATGCTCTAAGCACCCGAGCTAC
AGGAAGCCGGAGTACTGCGCGATACATGCTTATGAGGGGATGACTTGTGT
TGGTTTGAAGAAATGCGCCGACGATGAACCCTATAAAAAGCCAATTTACG
GGATGGCTGGCAGAAAGAGGCCCAAATATTGCGCTGAGCATTCCTCTACA
GGAATCGTTAACGTTACAAGGGAGAGTGCGGGGGATGGATGCTCGAGGCC
GAAAAATTATGACGTGGCCGGCATAATCAAAGCCGAGCACTGCACTGAGC
ATGCTGTCGAGGGAATTGAAGCCGGAGTACTGCGCGATACATGCTTATGA
GGGGATGACTTGTGTTGGTTTGAAGAAATGCGCCGACGATGAACCCTATA
AAAAGCCAATTTACGGGATGGCTGGCAGAAAGAGGCCCAAATATTGCGCT
GAGCATTCCTCTACAGGAATCGTTAACGTTACAAGGGAGAGTGCGGGGGA
TGGATGCTCGAGGCCGAAAAATTATGACGTGGCCGGCATAATCAAAGCCG
AGCACTGCACTGAGCATGCTGTCGAGGGAATT
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