mRNA_H-elongata_contig103102.261.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.730e-57 Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 1 Query: 1 AANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAKTPA 447 AAN E G K AHVVPDAG +FAVRVHDFRLYH+VCRDVI RWMYPLVPDNA+TGGVQTQYTY R C YKAPGVNLPRSVRLGNGVVIGADVTVGEN VIERSVI XXXXXXX +EG +VASRAM KTPA Sbjct: 153 AANHELGNKILAHVVPDAGASFAVRVHDFRLYHEVCRDVILRWMYPLVPDNATTGGVQTQYTYSRVCNYKAPGVNLPRSVRLGNGVVIGADVTVGENTVIERSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAIVASRAMTKTPA 301
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.610e-21 Identity = 67/138 (48.55%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 ANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNA--STGGVQTQYTY----------ERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAE 381 AN E G K AH+V ++ RV D RLYH V RD+I RW YPLVPDNA ST +RG Y+ GV LPRSV +G G VIG DV VGE AV+ XXXXXXX+ DSY+W GAE Sbjct: 254 ANVELGNKIMAHIV--GPREYSARVEDLRLYHAVSRDIIRRWTYPLVPDNAVSSTSXXXXXXXXXXXSACALRAQRGYVYRHRGVTLPRSVSVGAGTVIGPDVAVGEGAVLSGCXXXXXXXXXXXXXVTDSYVWEGAE 389
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A0D7BDJ9_9AGAR (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BDJ9_9AGAR) HSP 1 Score: 89.4 bits (220), Expect = 6.890e-18 Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAK 438 +A RV D R Y V +D+++RW +PLVPDN G T Y + RG KY K V L R+ ++GN +IG + E+ I SVIG C IVDSYL+ G +G IE +++ R + K Sbjct: 273 YAARVKDTRSYESVSKDILSRWTFPLVPDNNYPGS--TSYEHIRGNKYIAKDSSVTLGRTSKVGNNTLIGPSTNISEDVHITSSVIGQDCIIGAGSVIVDSYLFDGVVVGPECVIEKSIIGERVVIK 397
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: UPI001B87B174 (nucleotide-diphospho-sugar transferase n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B87B174) HSP 1 Score: 87.0 bits (214), Expect = 4.470e-17 Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAK 438 +A RV D R Y V +D+++RW +PLVPD+ GG Y + RG KY K V L R+ ++GN +IG+ + +NA + SV+G GC + +SYL+ GA IG +E +++ S K Sbjct: 277 YAARVRDTRSYDSVSKDILSRWTFPLVPDDNHPGG--HSYEHLRGNKYIAKDNSVTLSRTCKIGNNTLIGSKSQIADNAQVTASVLGQGCTVGAGSIVRNSYLFDGAIIGPNCVVEHSIIGSGVQIK 401
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A6A6QTR6_9PEZI (Mannose-1-phosphate guanyltransferase n=1 Tax=Lophium mytilinum TaxID=390894 RepID=A0A6A6QTR6_9PEZI) HSP 1 Score: 87.0 bits (214), Expect = 4.690e-17 Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 1 Query: 19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVAS 423 GK H+V D +A RV + Y +C+D+++RW YPL PD+ G Y ++G YK GV L RS + VIG D +VGE VI S+ XXXXX I +Y+W IGD +++E ++AS Sbjct: 856 GKTIHTHIVTDH---YAARVRNLHAYDSICKDIVSRWAYPLCPDSNLLRG--QSYRLQKGNIYKEQGVILARSCHINRKTVIGRDTSVGEGTVISNSIXXXXXXXXXXVSIEGAYIWDNTRIGDSSTVERAILAS 985
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A4V6TNL6_WALIC (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Wallemia ichthyophaga TaxID=245174 RepID=A0A4V6TNL6_WALIC) HSP 1 Score: 85.9 bits (211), Expect = 1.160e-16 Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAP-GVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVA 420 GK H + D +A RV D R Y + +D+I+RW YP+VPD G + + RG +Y GVN+ S R+G V+G+ TV ++ ++RSV+G G + SY+W IG G SI ++VA Sbjct: 557 GKTIHVHAIEDEEGGYAARVMDSRSYDAISQDIISRWTYPMVPDECMPGS--DRLLHHRGHRYYGKQGVNVAESARVGVCSVLGSHCTVAAHSTLDRSVLGQGVAVGENTQLSHSYIWNKTSIGSGCSIYQSIVA 689
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A1Y2J8Z8_PYCCO (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2J8Z8_PYCCO) HSP 1 Score: 84.7 bits (208), Expect = 2.880e-16 Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASR 426 +A RV D R Y V +D+++RW +PLVPD+ GG Y + RG KY K V L R+ ++GN +IG+ T+ NA + SVIG C + ++Y++ IG G +EG++V +R Sbjct: 275 YAARVADTRSYDSVSKDILSRWTFPLVPDDNHPGG--HAYEHLRGNKYIAKDNSVVLSRTCKVGNNTLIGSHTTIEANATVHASVIGQRCTIGPGAVLRNAYIFDDTHIGAGCVVEGSIVGAR 395
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: R9AFZ1_WALI9 (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Wallemia ichthyophaga (strain EXF-994 / CBS 113033) TaxID=1299270 RepID=R9AFZ1_WALI9) HSP 1 Score: 84.0 bits (206), Expect = 5.240e-16 Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAP-GVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVA 420 GK H + D +A RV D R Y + +D+I+RW YP+VPD G + + RG +Y GV++ S R+G V+G+ TV ++ ++RSV+G G + SY+W IG G SI ++VA Sbjct: 262 GKTIHVHAIEDEEGGYAARVMDSRSYDAISQDIISRWTYPMVPDECMPGS--DRLLHHRGHRYYGKQGVDVAESARVGVCSVLGSHCTVAAHSTLDRSVLGQGVAVGENTQLSHSYIWNKTSIGSGCSIYQSIVA 394
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A2R5GM02_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM02_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.260e-16 Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 7 NQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGC 327 N E G + AH + + +A RV FR Y + RDV+ RW+YPLVPD A+ +T Y ERG +Y+ GV + RS +G VIGA + E A I SV+GD C Sbjct: 266 NHELGYRIHAHELTSQ-SDYACRVRCFRTYDAISRDVVRRWLYPLVPD-ANWASEETAYALERGLRYRDEGVRVGRSSVIGQSCVIGAGSEIDEGATITTSVLGDHC 370
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: UPI002007E904 (nucleotide-diphospho-sugar transferase n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI002007E904) HSP 1 Score: 83.6 bits (205), Expect = 7.280e-16 Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVV 417 +A RV D R Y V +D+++RW +PLVPD+ GG Y + RG KY K V L R+ ++GN +IGA TV +A + SV+G C + D+Y++ +G G +EG++V Sbjct: 275 YAARVADTRSYDAVSKDILSRWTFPLVPDDNHPGG--HLYEHLRGNKYIAKDNSVTLSRTCKVGNNTLIGAGSTVAAHATVHASVVGQRCTIGPGAVLRDAYVFDDTHVGAGCVVEGSIV 392 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103102.261.1 >prot_H-elongata_contig103102.261.1 ID=prot_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp AANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDback to top mRNA from alignment at H-elongata_contig103102:712..2320- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103102.261.1 ID=mRNA_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1609bp|location=Sequence derived from alignment at H-elongata_contig103102:712..2320- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103102:712..2320- >mRNA_H-elongata_contig103102.261.1 ID=mRNA_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig103102:712..2320- (Himanthalia elongata Himel1 dioecious)back to top |