mRNA_H-elongata_contig103094.259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103094.259.1
Unique NamemRNA_H-elongata_contig103094.259.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A210R0Z4_MIZYE (Tonsoku-like protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R0Z4_MIZYE)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            RNE  +T LHKAC SGN+  V+KL++ G   + +D     P HEA  H +  I+ YL+
Sbjct:  531 RNEKGETALHKACISGNLKKVKKLIEQGHPVNPRDYCGWIPLHEAANHDHSEIVSYLL 588
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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A2DIE2_TRIVA (Ankyrin repeat protein, putative n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DIE2_TRIVA)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-6
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:    4 NEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLMTLDDNSESSKG 207
            N   QTPLH ACE GN+ VVQ L+  G  T+AKD    T +  A R +Y  I+  L   D N  +  G
Sbjct:   13 NTEKQTPLHIACEMGNVEVVQLLLSLGVQTAAKDVNGMTAYDFAKRSEYQDILDILNEYDVNKINEVG 80
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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI001E674012 (tonsoku-like protein n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E674012)

HSP 1 Score: 56.6 bits (135), Expect = 1.470e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIM 162
            RNE  +TPLHKAC  GN+N+V+KL+Q G   + +D     P HEA  H +  I+
Sbjct:  518 RNEKGETPLHKACIDGNLNMVKKLLQQGHPVNPRDNCGWLPIHEAANHGFHDIV 571
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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: T1J276_STRMM (Tonsoku-like protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J276_STRMM)

HSP 1 Score: 54.7 bits (130), Expect = 6.700e-6
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            +NE  +T LH+AC +GNIN+V++L++ G   + +D     P HEA  H +  I+ YL+
Sbjct:  393 KNEKGETQLHRACITGNINMVRRLIEKGHPVNPRDNCGWIPLHEAANHDHYDIVEYLL 450
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI0014032DBC (tonsoku-like protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014032DBC)

HSP 1 Score: 54.7 bits (130), Expect = 6.860e-6
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            RNE  +T LH+AC  GN+ +V+ L++ G   + +D     P HEAC H +  I+ YL+
Sbjct:  531 RNEKGETALHRACIEGNLRLVKILIEKGHPPNPRDYCGWLPLHEACNHNHQDIVEYLL 588
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A814TAD2_9BILA (Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814TAD2_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-5
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLMTLDDNS 192
            TPL  AC++G + +V+ L++ GAD    D    T    A R  YD+I+ YL+ LDDNS
Sbjct:  161 TPLRLACDNGQLEMVEYLIENGADLYHTDKNNSTSLMVASRRGYDNIVQYLLKLDDNS 218
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A1Y3MRS7_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MRS7_PIRSE)

HSP 1 Score: 50.1 bits (118), Expect = 1.900e-5
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSI 159
            T LH ACE+G+ NVVQ L++ GA+ +  +   +TP H AC+++Y++I
Sbjct:    1 TALHYACENGHENVVQYLIEQGANINKGNKGLETPLHIACKNKYENI 47
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI001C9B5883 (rabankyrin-5 isoform X1 n=3 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B5883)

HSP 1 Score: 53.1 bits (126), Expect = 2.310e-5
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKGL 210
            TPLH  C+ G   VVQ L++ GA+ +A+DA   TP H A ++Q+  I+  L+   ++D N    KGL
Sbjct:  727 TPLHLCCQWGLEQVVQTLIEHGANVNARDAEGKTPVHVAIQNQHSQIISLLLCHPSIDLNKRDKKGL 793
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A0C9RRB6_9HYME (Ankfy1 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RRB6_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 3.070e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKG 207
            TPLH  C+ G   VVQ LV+ GA+ +A+DA   TP H A ++Q++ I+  L+   ++D +S   KG
Sbjct:  502 TPLHLCCQWGLEQVVQTLVEHGANVNARDAEGKTPIHVAIQNQHEQIISLLLCHPSIDLSSRDKKG 567
[Close]
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI0005ACA9DD (rabankyrin-5 n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005ACA9DD)

HSP 1 Score: 52.8 bits (125), Expect = 3.150e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKG 207
            TPLH  C+ G   VVQ LV+ GA+ +A+DA   TP H A ++Q++ I+  L+   ++D +S   KG
Sbjct:  732 TPLHLCCQWGLEQVVQTLVEHGANVNARDAEGKTPIHVAIQNQHEQIISLLLCHPSIDLSSRDKKG 797
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A210R0Z4_MIZYE1.080e-643.10Tonsoku-like protein n=1 Tax=Mizuhopecten yessoens... [more]
A2DIE2_TRIVA1.160e-642.65Ankyrin repeat protein, putative n=1 Tax=Trichomon... [more]
UPI001E6740121.470e-646.30tonsoku-like protein n=1 Tax=Procambarus clarkii T... [more]
T1J276_STRMM6.700e-639.66Tonsoku-like protein n=1 Tax=Strigamia maritima Ta... [more]
UPI0014032DBC6.860e-639.66tonsoku-like protein n=1 Tax=Petromyzon marinus Ta... [more]
A0A814TAD2_9BILA1.190e-543.10Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 ... [more]
A0A1Y3MRS7_PIRSE1.900e-544.68Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
UPI001C9B58832.310e-540.30rabankyrin-5 isoform X1 n=3 Tax=Colletes gigas Tax... [more]
A0A0C9RRB6_9HYME3.070e-540.91Ankfy1 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
UPI0005ACA9DD3.150e-540.91rabankyrin-5 n=1 Tax=Fopius arisanus TaxID=64838 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103094contigH-elongata_contig103094:656..1775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LC53
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size423
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103094.259.1prot_H-elongata_contig103094.259.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103094 656..1775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.686621-CDS-H-elongata_contig103094:655..8171622929566.686621-CDS-H-elongata_contig103094:655..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 656..817 +
1691679073.3551805-CDS-H-elongata_contig103094:655..8171691679073.3551805-CDS-H-elongata_contig103094:655..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 656..817 +
1622929566.7011309-CDS-H-elongata_contig103094:1291..13831622929566.7011309-CDS-H-elongata_contig103094:1291..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1292..1383 +
1691679073.3639615-CDS-H-elongata_contig103094:1291..13831691679073.3639615-CDS-H-elongata_contig103094:1291..1383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1292..1383 +
1622929566.7128806-CDS-H-elongata_contig103094:1552..16091622929566.7128806-CDS-H-elongata_contig103094:1552..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1553..1609 +
1691679073.3711667-CDS-H-elongata_contig103094:1552..16091691679073.3711667-CDS-H-elongata_contig103094:1552..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1553..1609 +
1622929567.2463582-CDS-H-elongata_contig103094:1663..17751622929567.2463582-CDS-H-elongata_contig103094:1663..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1664..1775 +
1691679073.3781936-CDS-H-elongata_contig103094:1663..17751691679073.3781936-CDS-H-elongata_contig103094:1663..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103094 1664..1775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103094.259.1

>prot_H-elongata_contig103094.259.1 ID=prot_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQY
DSIMGYLMTLDDNSESSKGLKLLQGLDASWENTSRSRGQDRVNGAGDRKE
HPPLSESRSSSGSARPSPEEVGSFTPSTLRNSSKSTESLQG
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mRNA from alignment at H-elongata_contig103094:656..1775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103094.259.1 ID=mRNA_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1120bp|location=Sequence derived from alignment at H-elongata_contig103094:656..1775+ (Himanthalia elongata Himel1 dioecious)
AGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTGCGAATCCGGCAA
TATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCGATACGAGCGCAA
AGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGTCGGCATCAGTAC
GACAGCATCATGGTGAGCGGGAGGGGGGGGGCTATATCTACAACATCCCA
AGGCAACATGTCTCGTTCTCTTGATTCATTCATGAGCACCTCCTTTCCTC
CCCAACACTCCCGCTCTTTTTCCTTCCTTCCTTCATGCCTTATTGCCTGG
TTGCTCAGCAGCATACAGTACCAAAATTGCTTCCGGTATGCGTTTCGCGC
GCTTGGCCTATGACGGCTAATGGTTAGAATCCGTGCCAGGGGATGACGTC
ACGTGGCGTGATAAATGCTTTGCCGCACGATAGGCGGCCTTTTTCACAGT
GTGGTGGTCCGAGCAGGGGTCGGGTGTTAGTTATCGTTATCCTGATAGTA
GCCGTTTTCCTTTTGACTGATAGTAGCCGTTTTCCTTTTGACTGATAGTA
GCCGTTCTCCTTTTGACTGATAGTAGCCGTTTTCCTTTTGACTGATAGTA
GCCGTTCCCTGCCCCTGTGGGTTGTGGGGTTTGCAGGGGTACTTAATGAC
GCTGGATGACAATTCGGAAAGCAGCAAGGGCCTCAAGCTCTTACAGGGAC
TGGACGCGTCGTGGGAAAATACTAGCAGGTGAGTTGCTTTGCGTGAATGC
GGCACCCGGTGCTGATGTAGGGGACTGCAGGGTTGTGCGTGGAGAGTGGT
AGAGCGGAGTAAGGGGTGAACCGGGGCGAACGCAACACCAATCGAGCCCA
ACATGGTACTGGCGCCACTGCTCGTTTTCGCCGGTCGACTTTTCCAGATC
GCGTGGGCAGGACCGCGTCAATGGCGCCGGGGATAGAAAGGAACACCCGC
CGCTGTCGGCGACCGTTCCCGTGCCGTCGGCGACCTCGGGCTCGGACTCG
AGATCAAGATCGGAATCAAGATCGAGCTCAGGCTCGGCAAGGCCCAGCCC
TGAGGAGGTGGGCTCGTTTACGCCTTCGACGTTGCGTAACTCTTCGAAAT
CGACGGAATCGTTGCAAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig103094:656..1775+

>mRNA_H-elongata_contig103094.259.1 ID=mRNA_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig103094:656..1775+ (Himanthalia elongata Himel1 dioecious)
AGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTGCGAATCCGGCAA
TATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCGATACGAGCGCAA
AGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGTCGGCATCAGTAC
GACAGCATCATGAGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTG
CGAATCCGGCAATATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCG
ATACGAGCGCAAAGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGT
CGGCATCAGTACGACAGCATCATGGGGTACTTAATGACGCTGGATGACAA
TTCGGAAAGCAGCAAGGGCCTCAAGCTCTTACAGGGACTGGACGCGTCGT
GGGAAAATACTAGCAGGGGTACTTAATGACGCTGGATGACAATTCGGAAA
GCAGCAAGGGCCTCAAGCTCTTACAGGGACTGGACGCGTCGTGGGAAAAT
ACTAGCAGATCGCGTGGGCAGGACCGCGTCAATGGCGCCGGGGATAGAAA
GGAACACCCGCCGCTATCGCGTGGGCAGGACCGCGTCAATGGCGCCGGGG
ATAGAAAGGAACACCCGCCGCTATCGGAATCAAGATCGAGCTCAGGCTCG
GCAAGGCCCAGCCCTGAGGAGGTGGGCTCGTTTACGCCTTCGACGTTGCG
TAACTCTTCGAAATCGACGGAATCGTTGCAAGGAATCGGAATCAAGATCG
AGCTCAGGCTCGGCAAGGCCCAGCCCTGAGGAGGTGGGCTCGTTTACGCC
TTCGACGTTGCGTAACTCTTCGAAATCGACGGAATCGTTGCAAGGA
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