mRNA_H-elongata_contig103094.259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig103094.259.1
Unique Name	mRNA_H-elongata_contig103094.259.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A210R0Z4_MIZYE (Tonsoku-like protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R0Z4_MIZYE)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1

Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            RNE  +T LHKAC SGN+  V+KL++ G   + +D     P HEA  H +  I+ YL+
Sbjct:  531 RNEKGETALHKACISGNLKKVKKLIEQGHPVNPRDYCGWIPLHEAANHDHSEIVSYLL 588

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A2DIE2_TRIVA (Ankyrin repeat protein, putative n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DIE2_TRIVA)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-6
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 1

Query:    4 NEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLMTLDDNSESSKG 207
            N   QTPLH ACE GN+ VVQ L+  G  T+AKD    T +  A R +Y  I+  L   D N  +  G
Sbjct:   13 NTEKQTPLHIACEMGNVEVVQLLLSLGVQTAAKDVNGMTAYDFAKRSEYQDILDILNEYDVNKINEVG 80

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI001E674012 (tonsoku-like protein n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E674012)

HSP 1 Score: 56.6 bits (135), Expect = 1.470e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1

Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIM 162
            RNE  +TPLHKAC  GN+N+V+KL+Q G   + +D     P HEA  H +  I+
Sbjct:  518 RNEKGETPLHKACIDGNLNMVKKLLQQGHPVNPRDNCGWLPIHEAANHGFHDIV 571

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: T1J276_STRMM (Tonsoku-like protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J276_STRMM)

HSP 1 Score: 54.7 bits (130), Expect = 6.700e-6
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1

Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            +NE  +T LH+AC +GNIN+V++L++ G   + +D     P HEA  H +  I+ YL+
Sbjct:  393 KNEKGETQLHRACITGNINMVRRLIEKGHPVNPRDNCGWIPLHEAANHDHYDIVEYLL 450

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI0014032DBC (tonsoku-like protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014032DBC)

HSP 1 Score: 54.7 bits (130), Expect = 6.860e-6
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1

Query:    1 RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM 174
            RNE  +T LH+AC  GN+ +V+ L++ G   + +D     P HEAC H +  I+ YL+
Sbjct:  531 RNEKGETALHRACIEGNLRLVKILIEKGHPPNPRDYCGWLPLHEACNHNHQDIVEYLL 588

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A814TAD2_9BILA (Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814TAD2_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-5
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1

Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLMTLDDNS 192
            TPL  AC++G + +V+ L++ GAD    D    T    A R  YD+I+ YL+ LDDNS
Sbjct:  161 TPLRLACDNGQLEMVEYLIENGADLYHTDKNNSTSLMVASRRGYDNIVQYLLKLDDNS 218

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A1Y3MRS7_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MRS7_PIRSE)

HSP 1 Score: 50.1 bits (118), Expect = 1.900e-5
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 1

Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSI 159
            T LH ACE+G+ NVVQ L++ GA+ +  +   +TP H AC+++Y++I
Sbjct:    1 TALHYACENGHENVVQYLIEQGANINKGNKGLETPLHIACKNKYENI 47

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI001C9B5883 (rabankyrin-5 isoform X1 n=3 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B5883)

HSP 1 Score: 53.1 bits (126), Expect = 2.310e-5
Identity = 27/67 (40.30%), Postives = 40/67 (59.70%), Query Frame = 1

Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKGL 210
            TPLH  C+ G   VVQ L++ GA+ +A+DA   TP H A ++Q+  I+  L+   ++D N    KGL
Sbjct:  727 TPLHLCCQWGLEQVVQTLIEHGANVNARDAEGKTPVHVAIQNQHSQIISLLLCHPSIDLNKRDKKGL 793

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: A0A0C9RRB6_9HYME (Ankfy1 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RRB6_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 3.070e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1

Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKG 207
            TPLH  C+ G   VVQ LV+ GA+ +A+DA   TP H A ++Q++ I+  L+   ++D +S   KG
Sbjct:  502 TPLHLCCQWGLEQVVQTLVEHGANVNARDAEGKTPIHVAIQNQHEQIISLLLCHPSIDLSSRDKKG 567

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BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Match: UPI0005ACA9DD (rabankyrin-5 n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005ACA9DD)

HSP 1 Score: 52.8 bits (125), Expect = 3.150e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1

Query:   19 TPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQYDSIMGYLM---TLDDNSESSKG 207
            TPLH  C+ G   VVQ LV+ GA+ +A+DA   TP H A ++Q++ I+  L+   ++D +S   KG
Sbjct:  732 TPLHLCCQWGLEQVVQTLVEHGANVNARDAEGKTPIHVAIQNQHEQIISLLLCHPSIDLSSRDKKG 797

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot

BLAST of mRNA_H-elongata_contig103094.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
A0A210R0Z4_MIZYE	1.080e-6	43.10	Tonsoku-like protein n=1 Tax=Mizuhopecten yessoens...	[more]
A2DIE2_TRIVA	1.160e-6	42.65	Ankyrin repeat protein, putative n=1 Tax=Trichomon...	[more]
UPI001E674012	1.470e-6	46.30	tonsoku-like protein n=1 Tax=Procambarus clarkii T...	[more]
T1J276_STRMM	6.700e-6	39.66	Tonsoku-like protein n=1 Tax=Strigamia maritima Ta...	[more]
UPI0014032DBC	6.860e-6	39.66	tonsoku-like protein n=1 Tax=Petromyzon marinus Ta...	[more]
A0A814TAD2_9BILA	1.190e-5	43.10	Hypothetical protein n=8 Tax=Rotaria sp. Silwood1 ...	[more]
A0A1Y3MRS7_PIRSE	1.900e-5	44.68	Uncharacterized protein (Fragment) n=1 Tax=Piromyc...	[more]
UPI001C9B5883	2.310e-5	40.30	rabankyrin-5 isoform X1 n=3 Tax=Colletes gigas Tax...	[more]
A0A0C9RRB6_9HYME	3.070e-5	40.91	Ankfy1 protein (Fragment) n=1 Tax=Fopius arisanus ...	[more]
UPI0005ACA9DD	3.150e-5	40.91	rabankyrin-5 n=1 Tax=Fopius arisanus TaxID=64838 R...	[more]

Pages

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig103094.259.1	prot_H-elongata_contig103094.259.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig103094 656..1775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929566.686621-CDS-H-elongata_contig103094:655..817	1622929566.686621-CDS-H-elongata_contig103094:655..817	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 656..817 +
1691679073.3551805-CDS-H-elongata_contig103094:655..817	1691679073.3551805-CDS-H-elongata_contig103094:655..817	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 656..817 +
1622929566.7011309-CDS-H-elongata_contig103094:1291..1383	1622929566.7011309-CDS-H-elongata_contig103094:1291..1383	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1292..1383 +
1691679073.3639615-CDS-H-elongata_contig103094:1291..1383	1691679073.3639615-CDS-H-elongata_contig103094:1291..1383	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1292..1383 +
1622929566.7128806-CDS-H-elongata_contig103094:1552..1609	1622929566.7128806-CDS-H-elongata_contig103094:1552..1609	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1553..1609 +
1691679073.3711667-CDS-H-elongata_contig103094:1552..1609	1691679073.3711667-CDS-H-elongata_contig103094:1552..1609	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1553..1609 +
1622929567.2463582-CDS-H-elongata_contig103094:1663..1775	1622929567.2463582-CDS-H-elongata_contig103094:1663..1775	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1664..1775 +
1691679073.3781936-CDS-H-elongata_contig103094:1663..1775	1691679073.3781936-CDS-H-elongata_contig103094:1663..1775	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig103094 1664..1775 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig103094:656..1775+
coding sequence from alignment at H-elongata_contig103094:656..1775+

protein sequence of mRNA_H-elongata_contig103094.259.1

>prot_H-elongata_contig103094.259.1 ID=prot_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
RNEFAQTPLHKACESGNINVVQKLVQGGADTSAKDAAEDTPFHEACRHQY
DSIMGYLMTLDDNSESSKGLKLLQGLDASWENTSRSRGQDRVNGAGDRKE
HPPLSESRSSSGSARPSPEEVGSFTPSTLRNSSKSTESLQG

mRNA from alignment at H-elongata_contig103094:656..1775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig103094.259.1 ID=mRNA_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1120bp|location=Sequence derived from alignment at H-elongata_contig103094:656..1775+ (Himanthalia elongata Himel1 dioecious)
AGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTGCGAATCCGGCAA
TATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCGATACGAGCGCAA
AGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGTCGGCATCAGTAC
GACAGCATCATGGTGAGCGGGAGGGGGGGGGCTATATCTACAACATCCCA
AGGCAACATGTCTCGTTCTCTTGATTCATTCATGAGCACCTCCTTTCCTC
CCCAACACTCCCGCTCTTTTTCCTTCCTTCCTTCATGCCTTATTGCCTGG
TTGCTCAGCAGCATACAGTACCAAAATTGCTTCCGGTATGCGTTTCGCGC
GCTTGGCCTATGACGGCTAATGGTTAGAATCCGTGCCAGGGGATGACGTC
ACGTGGCGTGATAAATGCTTTGCCGCACGATAGGCGGCCTTTTTCACAGT
GTGGTGGTCCGAGCAGGGGTCGGGTGTTAGTTATCGTTATCCTGATAGTA
GCCGTTTTCCTTTTGACTGATAGTAGCCGTTTTCCTTTTGACTGATAGTA
GCCGTTCTCCTTTTGACTGATAGTAGCCGTTTTCCTTTTGACTGATAGTA
GCCGTTCCCTGCCCCTGTGGGTTGTGGGGTTTGCAGGGGTACTTAATGAC
GCTGGATGACAATTCGGAAAGCAGCAAGGGCCTCAAGCTCTTACAGGGAC
TGGACGCGTCGTGGGAAAATACTAGCAGGTGAGTTGCTTTGCGTGAATGC
GGCACCCGGTGCTGATGTAGGGGACTGCAGGGTTGTGCGTGGAGAGTGGT
AGAGCGGAGTAAGGGGTGAACCGGGGCGAACGCAACACCAATCGAGCCCA
ACATGGTACTGGCGCCACTGCTCGTTTTCGCCGGTCGACTTTTCCAGATC
GCGTGGGCAGGACCGCGTCAATGGCGCCGGGGATAGAAAGGAACACCCGC
CGCTGTCGGCGACCGTTCCCGTGCCGTCGGCGACCTCGGGCTCGGACTCG
AGATCAAGATCGGAATCAAGATCGAGCTCAGGCTCGGCAAGGCCCAGCCC
TGAGGAGGTGGGCTCGTTTACGCCTTCGACGTTGCGTAACTCTTCGAAAT
CGACGGAATCGTTGCAAGGA

Coding sequence (CDS) from alignment at H-elongata_contig103094:656..1775+

>mRNA_H-elongata_contig103094.259.1 ID=mRNA_H-elongata_contig103094.259.1|Name=mRNA_H-elongata_contig103094.259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig103094:656..1775+ (Himanthalia elongata Himel1 dioecious)
AGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTGCGAATCCGGCAA
TATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCGATACGAGCGCAA
AGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGTCGGCATCAGTAC
GACAGCATCATGAGGAACGAGTTCGCCCAGACCCCTCTCCACAAGGCGTG
CGAATCCGGCAATATAAACGTGGTTCAGAAGCTGGTTCAAGGGGGCGCCG
ATACGAGCGCAAAGGACGCCGCGGAAGATACTCCTTTCCACGAGGCGTGT
CGGCATCAGTACGACAGCATCATGGGGTACTTAATGACGCTGGATGACAA
TTCGGAAAGCAGCAAGGGCCTCAAGCTCTTACAGGGACTGGACGCGTCGT
GGGAAAATACTAGCAGGGGTACTTAATGACGCTGGATGACAATTCGGAAA
GCAGCAAGGGCCTCAAGCTCTTACAGGGACTGGACGCGTCGTGGGAAAAT
ACTAGCAGATCGCGTGGGCAGGACCGCGTCAATGGCGCCGGGGATAGAAA
GGAACACCCGCCGCTATCGCGTGGGCAGGACCGCGTCAATGGCGCCGGGG
ATAGAAAGGAACACCCGCCGCTATCGGAATCAAGATCGAGCTCAGGCTCG
GCAAGGCCCAGCCCTGAGGAGGTGGGCTCGTTTACGCCTTCGACGTTGCG
TAACTCTTCGAAATCGACGGAATCGTTGCAAGGAATCGGAATCAAGATCG
AGCTCAGGCTCGGCAAGGCCCAGCCCTGAGGAGGTGGGCTCGTTTACGCC
TTCGACGTTGCGTAACTCTTCGAAATCGACGGAATCGTTGCAAGGA