mRNA_H-elongata_contig103065.257.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI) HSP 1 Score: 119 bits (298), Expect = 4.510e-29 Identity = 74/130 (56.92%), Postives = 90/130 (69.23%), Query Frame = 1 Query: 25 LLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQGRATASMAGMMAGLLGMGGTSAAGT-GAEGGGSPPGCTGAAASSRGLTSAEM-SGVPQEAFAGQEEGVLHSVLEDLLEGRVSSTLVHNP 408
LLVPGML+ +FS KSNRL S+ SFDP++PARQLARAAMLQGRAT MAGMMAG+LGMGG + A+GGG P A+ S G + F GQ+EGVLHSVL+D+ E RVSST++ +P
Sbjct: 311 LLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPSAARDRASESSGAXXXXXXTAANPPPFVGQDEGVLHSVLQDIREWRVSSTVLDDP 440
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.560e-20 Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 13 RSQHLLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQGRATASMAGMMAGLLGMGGTSAAGTGAEGGGSPPG 252
RS LLVPGML+ +FS KSNRL S+ SFDP++PARQLARAAMLQGRAT MAGMMAG+LGMGG + A GG PG
Sbjct: 531 RSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPG 610 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103065.257.1 >prot_H-elongata_contig103065.257.1 ID=prot_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MLKHRSQHLLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQGback to top mRNA from alignment at H-elongata_contig103065:260..1227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103065.257.1 ID=mRNA_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=968bp|location=Sequence derived from alignment at H-elongata_contig103065:260..1227- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103065:260..1227- >mRNA_H-elongata_contig103065.257.1 ID=mRNA_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig103065:260..1227- (Himanthalia elongata Himel1 dioecious)back to top |