mRNA_H-elongata_contig103050.256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103050.256.1
Unique NamemRNA_H-elongata_contig103050.256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.300e-14
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   55 DPEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            +P+IPFPFEPY VQKQLMRKIY TLE GG+GIFESPTGT
Sbjct:   20 EPDIPFPFEPYDVQKQLMRKIYSTLENGGIGIFESPTGT 58
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   16 ILTDEVGKSDGGLD--PEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            +L D    S+G +   P IPFPF PY VQ+QLM  +Y   ERGG+GIFESPTGT
Sbjct:    1 MLADAQQNSEGDMTFVPSIPFPFPPYEVQQQLMTHLYTAFERGGIGIFESPTGT 54
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A7S0NLH8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NLH8_MICPS)

HSP 1 Score: 58.5 bits (140), Expect = 1.340e-8
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   70 FPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            FPFEPY +Q  LMR +Y TLERGG+G+FESPTGT
Sbjct:   31 FPFEPYPIQLDLMRGLYRTLERGGIGVFESPTGT 64
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: UPI0018CFF1EB (ATP-dependent DNA helicase DDX11-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018CFF1EB)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   61 EIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            E PFPF+PY +Q++ M+++Y+TLE+ G+GIFESPTGT
Sbjct:    5 EFPFPFKPYDIQQKFMKELYLTLEKRGLGIFESPTGT 41
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A556U148_BAGYA (ATP-dependent DNA helicase DDX11 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U148_BAGYA)

HSP 1 Score: 58.2 bits (139), Expect = 1.930e-8
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   43 DGGLDPEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            DG  +   PFPF PY +Q++ M  +YI LE+G VGIFESPTGT
Sbjct:    3 DGNGESRFPFPFNPYPIQERFMEALYIVLEQGKVGIFESPTGT 45
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: UPI000907367C (ATP-dependent DNA helicase DDX11 isoform X5 n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=UPI000907367C)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   31 VGKSDGGLDPEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            VG  +GG+    PFPF PY +Q++ M  +Y  LE GGVGIFESPTGT
Sbjct:   55 VGAREGGV--RFPFPFAPYRIQEEFMAALYRALEAGGVGIFESPTGT 99
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A5B8MRF8_9CHLO (DNA helicase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRF8_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   70 FPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            FPFEPY VQK LMR +Y TLE GGVG+ ESPTGT
Sbjct:   14 FPFEPYDVQKDLMRAVYRTLEHGGVGVLESPTGT 47
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A6P3X819_DINQU (probable ATP-dependent RNA helicase DDX11 isoform X1 n=2 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3X819_DINQU)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   61 EIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            E PFPF PY +QKQ M+++Y  LE GG+G+FESPTGT
Sbjct:    6 EFPFPFPPYEIQKQFMKELYNCLESGGLGLFESPTGT 42
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: A0A151NIF8_ALLMI (Putative ATP-dependent RNA helicase DDX11 isoform B n=4 Tax=Alligator TaxID=8495 RepID=A0A151NIF8_ALLMI)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   31 VGKSDGGLDPEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            VG  +GG+    PFPF PY +Q++ M  +Y  LE GGVGIFESPTGT
Sbjct:    9 VGAREGGV--RFPFPFAPYRIQEEFMAALYRALEAGGVGIFESPTGT 53
[Close]
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Match: UPI0009073E1F (ATP-dependent DNA helicase DDX11 isoform X1 n=4 Tax=Alligator mississippiensis TaxID=8496 RepID=UPI0009073E1F)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   31 VGKSDGGLDPEIPFPFEPYLVQKQLMRKIYITLERGGVGIFESPTGT 171
            VG  +GG+    PFPF PY +Q++ M  +Y  LE GGVGIFESPTGT
Sbjct:   55 VGAREGGV--RFPFPFAPYRIQEEFMAALYRALEAGGVGIFESPTGT 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103050.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI5.300e-1484.62Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWY4_9STRA1.300e-1057.41Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S0NLH8_MICPS1.340e-873.53Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
UPI0018CFF1EB1.420e-862.16ATP-dependent DNA helicase DDX11-like n=1 Tax=Plut... [more]
A0A556U148_BAGYA1.930e-858.14ATP-dependent DNA helicase DDX11 n=1 Tax=Bagarius ... [more]
UPI000907367C1.940e-857.45ATP-dependent DNA helicase DDX11 isoform X5 n=1 Ta... [more]
A0A5B8MRF8_9CHLO1.940e-876.47DNA helicase n=2 Tax=Chloropicon primus TaxID=1764... [more]
A0A6P3X819_DINQU1.940e-864.86probable ATP-dependent RNA helicase DDX11 isoform ... [more]
A0A151NIF8_ALLMI1.940e-857.45Putative ATP-dependent RNA helicase DDX11 isoform ... [more]
UPI0009073E1F1.940e-857.45ATP-dependent DNA helicase DDX11 isoform X1 n=4 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103050contigH-elongata_contig103050:1445..1615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.534233-UTR-H-elongata_contig103050:1444..14471622929566.534233-UTR-H-elongata_contig103050:1444..1447Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103050 1445..1447 +
1691679073.291731-UTR-H-elongata_contig103050:1444..14471691679073.291731-UTR-H-elongata_contig103050:1444..1447Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103050 1445..1447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.5467677-CDS-H-elongata_contig103050:1447..16151622929566.5467677-CDS-H-elongata_contig103050:1447..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103050 1448..1615 +
1691679073.3037171-CDS-H-elongata_contig103050:1447..16151691679073.3037171-CDS-H-elongata_contig103050:1447..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103050 1448..1615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103050.256.1prot_H-elongata_contig103050.256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103050 1448..1615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103050.256.1

>prot_H-elongata_contig103050.256.1 ID=prot_H-elongata_contig103050.256.1|Name=mRNA_H-elongata_contig103050.256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MSLNILTDEVGKSDGGLDPEIPFPFEPYLVQKQLMRKIYITLERGGVGIF
ESPTGT
back to top

mRNA from alignment at H-elongata_contig103050:1445..1615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103050.256.1 ID=mRNA_H-elongata_contig103050.256.1|Name=mRNA_H-elongata_contig103050.256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig103050:1445..1615+ (Himanthalia elongata Himel1 dioecious)
GAGATGAGCCTAAATATCTTAACCGATGAAGTCGGTAAAAGCGATGGTGG
CTTAGATCCCGAAATTCCTTTCCCGTTCGAACCCTACTTAGTCCAGAAGC
AGCTGATGCGCAAGATCTACATCACCCTGGAGCGTGGAGGCGTAGGCATC
TTTGAGAGTCCTACGGGCACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig103050:1445..1615+

>mRNA_H-elongata_contig103050.256.1 ID=mRNA_H-elongata_contig103050.256.1|Name=mRNA_H-elongata_contig103050.256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig103050:1445..1615+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCTAAATATCTTAACCGATGAAGTCGGTAAAAGCGATGGTGGCTT
AGATCCCGAAATTCCTTTCCCGTTCGAACCCTACTTAGTCCAGAAGCAGC
TGATGCGCAAGATCTACATCACCCTGGAGCGTGGAGGCGTAGGCATCTTT
GAGAGTCCTACGGGCACGATGAGCCTAAATATCTTAACCGATGAAGTCGG
TAAAAGCGATGGTGGCTTAGATCCCGAAATTCCTTTCCCGTTCGAACCCT
ACTTAGTCCAGAAGCAGCTGATGCGCAAGATCTACATCACCCTGGAGCGT
GGAGGCGTAGGCATCTTTGAGAGTCCTACGGGCACG
back to top