mRNA_H-elongata_contig10285.246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10285.246.1
Unique NamemRNA_H-elongata_contig10285.246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.380e-50
Identity = 97/147 (65.99%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:    1 RELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETGPSQSLPRGNRRGGTADTMLTPDVTIPQASVSGGETVGTGSVARGVGTSARSASCSGESRRSQ 441
            RE++CRRCR PV    WW VRLESV SP+LKPG EAEVGLAFRCEC+ALH+GEPLPTR STG+AW+S DPVV+   TTCP VE GPSQSL RG RR G AD ++TP     + + S GE VGTGS ARGV  S  S S +GESRR+Q
Sbjct:  376 REVKCRRCRHPVQDSEWWCVRLESVVSPILKPGVEAEVGLAFRCECDALHIGEPLPTRVSTGSAWTSADPVVKIWRTTCPVVEHGPSQSLTRGRRRVGRADPIVTPGA-ARRTTPSSGEEVGTGSGARGVLRSTPSTSDTGESRRAQ 521
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BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5JT80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT80_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.760e-24
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
            + +CRRC   V    W YVRLESV  P+L PG  AEVG+ FRC+C A+H+GEPLPTR  TG AWS  D VV+  G TCP    G
Sbjct:  120 KTKCRRCGASVPVGGWTYVRLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVEAIGHTCPEARRG 203
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BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5KTA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.080e-23
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCP 240
            + +CRRC   V    W YVRLESV  P+L PG  AEVG+ FRC+C A+H+GEPLPTR  TG AWS  D VV+  G TCP
Sbjct:   85 KTKCRRCGASVPVGGWTYVRLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVETIGHTCP 163
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BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.340e-22
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
            ++ CRRC   V    W YVRLESVASP L PG   EVGLAF+CEC A+H+GE LP R   GT WS +D VV+  G  CP  ETG
Sbjct:  285 QISCRRCDLFVRLGGWTYVRLESVASPFLYPGVTPEVGLAFQCECGAVHVGETLPRRRDRGTVWSLEDAVVEMLGHACPVRETG 368
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BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5KFZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.130e-19
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   61 RLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
            RLESV  P+L PG  AEVG+ FRC+C A+H+GEPLPTR  TG AWS  D VV+  G TCP    G
Sbjct:    5 RLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVEAIGHTCPEARRG 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JU55_9PHAE3.380e-5065.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT80_9PHAE4.760e-2455.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA8_9PHAE1.080e-2358.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE6.340e-2257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFZ2_9PHAE5.130e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10285contigH-elongata_contig10285:1966..2655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.5272655-CDS-H-elongata_contig10285:1965..23781622929565.5272655-CDS-H-elongata_contig10285:1965..2378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10285 1966..2378 +
1691679072.748914-CDS-H-elongata_contig10285:1965..23781691679072.748914-CDS-H-elongata_contig10285:1965..2378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10285 1966..2378 +
1622929565.5489018-CDS-H-elongata_contig10285:2626..26541622929565.5489018-CDS-H-elongata_contig10285:2626..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10285 2627..2654 +
1691679072.7598996-CDS-H-elongata_contig10285:2626..26541691679072.7598996-CDS-H-elongata_contig10285:2626..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10285 2627..2654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10285.246.1prot_H-elongata_contig10285.246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10285 1966..2654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10285.246.1

>prot_H-elongata_contig10285.246.1 ID=prot_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
RELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALH
LGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETGPSQSLPRGNRRGGTA
DTMLTPDVTIPQASVSGGETVGTGSVARGVGTSARSASCSGESRRSQ
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mRNA from alignment at H-elongata_contig10285:1966..2655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10285.246.1 ID=mRNA_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=690bp|location=Sequence derived from alignment at H-elongata_contig10285:1966..2655+ (Himanthalia elongata Himel1 dioecious)
CGTGAACTACGGTGCCGCCGTTGCCGTACACCTGTGGCGGCCCGAGCATG
GTGGTACGTTCGCTTGGAGTCCGTGGCCAGCCCTGTTCTGAAGCCAGGAT
CAGAGGCAGAGGTGGGCTTGGCGTTCCGCTGCGAATGTGAAGCGCTTCAT
TTAGGCGAGCCGCTACCTACACGGTCCTCCACCGGTACCGCGTGGTCATC
AGACGACCCCGTGGTACAGTTCCATGGAACCACCTGCCCGGCGGTGGAGA
CAGGGCCGAGTCAGAGTCTCCCCAGAGGGAATAGAAGAGGCGGAACGGCG
GACACGATGCTCACGCCGGATGTGACTATACCACAGGCGTCGGTCAGTGG
TGGCGAAACAGTCGGCACGGGGAGTGTTGCTCGAGGTGTCGGGACTTCCG
CACGGTCCGCGAGGTATGTCGTCTATAATCTCAGTTATTTTGTCTTAGCC
CGAGGCATGGGATGGGTGAACCGTGCGCCATGTTTGAGACACTGGCAATG
GGGTGGCACTGGTCCTTGGGCCCTGCTTGCATCACCCCAATCTGCTTGCT
TACATGTTTGTACGACAATGTTCGAGGTTTGCGACGGAAATATACACCCT
CATCCTCGCCACTCTCCGCCGGTTTTTTTGTTTTGTTTGCATATTACTGT
ATGTGGCGAAGCTGCTCGGGAGAGTCTAGGCGGTCACAAC
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Coding sequence (CDS) from alignment at H-elongata_contig10285:1966..2655+

>mRNA_H-elongata_contig10285.246.1 ID=mRNA_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig10285:1966..2655+ (Himanthalia elongata Himel1 dioecious)
CGTGAACTACGGTGCCGCCGTTGCCGTACACCTGTGGCGGCCCGAGCATG
GTGGTACGTTCGCTTGGAGTCCGTGGCCAGCCCTGTTCTGAAGCCAGGAT
CAGAGGCAGAGGTGGGCTTGGCGTTCCGCTGCGAATGTGAAGCGCTTCAT
TTAGGCGAGCCGCTACCTACACGGTCCTCCACCGGTACCGCGTGGTCATC
AGACGACCCCGTGGTACAGTTCCATGGAACCACCTGCCCGGCGGTGGAGA
CAGGGCCGAGTCAGAGTCTCCCCAGAGGGAATAGAAGAGGCGGAACGGCG
GACACGATGCTCACGCCGGATGTGACTATACCACAGGCGTCGGTCAGTGG
TGGCGAAACAGTCGGCACGGGGAGTGTTGCTCGAGGTGTCGGGACTTCCG
CACGGTCCGCGAGCGTGAACTACGGTGCCGCCGTTGCCGTACACCTGTGG
CGGCCCGAGCATGGTGGTACGTTCGCTTGGAGTCCGTGGCCAGCCCTGTT
CTGAAGCCAGGATCAGAGGCAGAGGTGGGCTTGGCGTTCCGCTGCGAATG
TGAAGCGCTTCATTTAGGCGAGCCGCTACCTACACGGTCCTCCACCGGTA
CCGCGTGGTCATCAGACGACCCCGTGGTACAGTTCCATGGAACCACCTGC
CCGGCGGTGGAGACAGGGCCGAGTCAGAGTCTCCCCAGAGGGAATAGAAG
AGGCGGAACGGCGGACACGATGCTCACGCCGGATGTGACTATACCACAGG
CGTCGGTCAGTGGTGGCGAAACAGTCGGCACGGGGAGTGTTGCTCGAGGT
GTCGGGACTTCCGCACGGTCCGCGAGCTGCTCGGGAGAGTCTAGGCGGTC
ACAACTGCTCGGGAGAGTCTAGGCGGTCACAA
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