mRNA_H-elongata_contig10285.246.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 181 bits (460), Expect = 3.380e-50 Identity = 97/147 (65.99%), Postives = 111/147 (75.51%), Query Frame = 1 Query: 1 RELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETGPSQSLPRGNRRGGTADTMLTPDVTIPQASVSGGETVGTGSVARGVGTSARSASCSGESRRSQ 441
RE++CRRCR PV WW VRLESV SP+LKPG EAEVGLAFRCEC+ALH+GEPLPTR STG+AW+S DPVV+ TTCP VE GPSQSL RG RR G AD ++TP + + S GE VGTGS ARGV S S S +GESRR+Q
Sbjct: 376 REVKCRRCRHPVQDSEWWCVRLESVVSPILKPGVEAEVGLAFRCECDALHIGEPLPTRVSTGSAWTSADPVVKIWRTTCPVVEHGPSQSLTRGRRRVGRADPIVTPGA-ARRTTPSSGEEVGTGSGARGVLRSTPSTSDTGESRRAQ 521
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5JT80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT80_9PHAE) HSP 1 Score: 103 bits (258), Expect = 4.760e-24 Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
+ +CRRC V W YVRLESV P+L PG AEVG+ FRC+C A+H+GEPLPTR TG AWS D VV+ G TCP G
Sbjct: 120 KTKCRRCGASVPVGGWTYVRLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVEAIGHTCPEARRG 203
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5KTA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA8_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.080e-23 Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCP 240
+ +CRRC V W YVRLESV P+L PG AEVG+ FRC+C A+H+GEPLPTR TG AWS D VV+ G TCP
Sbjct: 85 KTKCRRCGASVPVGGWTYVRLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVETIGHTCP 163
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 100 bits (250), Expect = 6.340e-22 Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 4 ELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
++ CRRC V W YVRLESVASP L PG EVGLAF+CEC A+H+GE LP R GT WS +D VV+ G CP ETG
Sbjct: 285 QISCRRCDLFVRLGGWTYVRLESVASPFLYPGVTPEVGLAFQCECGAVHVGETLPRRRDRGTVWSLEDAVVEMLGHACPVRETG 368
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Match: A0A6H5KFZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ2_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 5.130e-19 Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 61 RLESVASPVLKPGSEAEVGLAFRCECEALHLGEPLPTRSSTGTAWSSDDPVVQFHGTTCPAVETG 255
RLESV P+L PG AEVG+ FRC+C A+H+GEPLPTR TG AWS D VV+ G TCP G
Sbjct: 5 RLESVVFPLLNPGEVAEVGIQFRCQCGAIHVGEPLPTRGETGEAWSLSDIVVEAIGHTCPEARRG 69 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10285.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10285.246.1 >prot_H-elongata_contig10285.246.1 ID=prot_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp RELRCRRCRTPVAARAWWYVRLESVASPVLKPGSEAEVGLAFRCECEALHback to top mRNA from alignment at H-elongata_contig10285:1966..2655+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10285.246.1 ID=mRNA_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=690bp|location=Sequence derived from alignment at H-elongata_contig10285:1966..2655+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10285:1966..2655+ >mRNA_H-elongata_contig10285.246.1 ID=mRNA_H-elongata_contig10285.246.1|Name=mRNA_H-elongata_contig10285.246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig10285:1966..2655+ (Himanthalia elongata Himel1 dioecious)back to top |