mRNA_H-elongata_contig102819.243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102819.243.1
Unique NamemRNA_H-elongata_contig102819.243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102819.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102819contigH-elongata_contig102819:1603..2247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size645
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102819.243.1prot_H-elongata_contig102819.243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102819 1658..2053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.2408123-UTR-H-elongata_contig102819:1602..16571622929565.2408123-UTR-H-elongata_contig102819:1602..1657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102819 1603..1657 +
1691679072.6446817-UTR-H-elongata_contig102819:1602..16571691679072.6446817-UTR-H-elongata_contig102819:1602..1657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102819 1603..1657 +
1622929565.2639213-UTR-H-elongata_contig102819:2053..22471622929565.2639213-UTR-H-elongata_contig102819:2053..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102819 2054..2247 +
1691679072.6641996-UTR-H-elongata_contig102819:2053..22471691679072.6641996-UTR-H-elongata_contig102819:2053..2247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102819 2054..2247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.251139-CDS-H-elongata_contig102819:1657..20531622929565.251139-CDS-H-elongata_contig102819:1657..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102819 1658..2053 +
1691679072.6544378-CDS-H-elongata_contig102819:1657..20531691679072.6544378-CDS-H-elongata_contig102819:1657..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102819 1658..2053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102819.243.1

>prot_H-elongata_contig102819.243.1 ID=prot_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MYRLIVPIERICKMACSNNKTHMHIHTHFILEDPNGANCCSLHPSYTDLC
EVVVNPGGRRATIKSVPYRLVSRGVKHYGAQNPTSTPVPLPRVSLDNTDS
SSQHRKQHGFFFLVGGGGGGIYDLYFSIRCY*
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mRNA from alignment at H-elongata_contig102819:1603..2247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102819.243.1 ID=mRNA_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig102819:1603..2247+ (Himanthalia elongata Himel1 dioecious)
CGTCTAACGTCGTTTTGCCCAGAGTATCATTGCGCTGTCGGTGGTTCTTT
GAGACATGTACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCG
TGTTCAAACAATAAAACACACATGCACATACACACACACTTTATACTTGA
AGATCCTAATGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACT
TGTGTGAGGTTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCA
GTGCCTTACCGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAA
TCCCACCTCTACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGG
ACAGCAGCAGCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGG
GGGGGAGGGGGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTA
ATATTAGTTGCCGTGATGTCATCGAGCGGGATACCTACTGAACGTTTGCC
CGCGGTATGCGGTACGTCACTGGAGGGAATAAAAGTAGGGTAGATCGGAC
CGCCGCGATCTTGGTGAACGCGAAATCTCCCCCCCCAAAATCATCCCAAC
CCTAACCCTTACTGATCCTCTCCAATAGCTCGCCCTCGCTCGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig102819:1603..2247+

>mRNA_H-elongata_contig102819.243.1 ID=mRNA_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig102819:1603..2247+ (Himanthalia elongata Himel1 dioecious)
ATGTACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCGTGTTC
AAACAATAAAACACACATGCACATACACACACACTTTATACTTGAAGATC
CTAATGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACTTGTGT
GAGGTTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCAGTGCC
TTACCGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAATCCCA
CCTCTACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGGACAGC
AGCAGCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGGGGGGG
AGGGGGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTAAATGT
ACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCGTGTTCAAAC
AATAAAACACACATGCACATACACACACACTTTATACTTGAAGATCCTAA
TGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACTTGTGTGAGG
TTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCAGTGCCTTAC
CGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAATCCCACCTC
TACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGGACAGCAGCA
GCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGGGGGGGAGGG
GGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTAA
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