Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 645 |
Cds size | 396 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929565.2408123-UTR-H-elongata_contig102819:1602..1657 | 1622929565.2408123-UTR-H-elongata_contig102819:1602..1657 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102819 1603..1657 + |
1691679072.6446817-UTR-H-elongata_contig102819:1602..1657 | 1691679072.6446817-UTR-H-elongata_contig102819:1602..1657 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102819 1603..1657 + |
1622929565.2639213-UTR-H-elongata_contig102819:2053..2247 | 1622929565.2639213-UTR-H-elongata_contig102819:2053..2247 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102819 2054..2247 + |
1691679072.6641996-UTR-H-elongata_contig102819:2053..2247 | 1691679072.6641996-UTR-H-elongata_contig102819:2053..2247 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102819 2054..2247 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929565.251139-CDS-H-elongata_contig102819:1657..2053 | 1622929565.251139-CDS-H-elongata_contig102819:1657..2053 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102819 1658..2053 + |
1691679072.6544378-CDS-H-elongata_contig102819:1657..2053 | 1691679072.6544378-CDS-H-elongata_contig102819:1657..2053 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102819 1658..2053 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102819.243.1 >prot_H-elongata_contig102819.243.1 ID=prot_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MYRLIVPIERICKMACSNNKTHMHIHTHFILEDPNGANCCSLHPSYTDLC EVVVNPGGRRATIKSVPYRLVSRGVKHYGAQNPTSTPVPLPRVSLDNTDS SSQHRKQHGFFFLVGGGGGGIYDLYFSIRCY* back to topmRNA from alignment at H-elongata_contig102819:1603..2247+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig102819.243.1 ID=mRNA_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig102819:1603..2247+ (Himanthalia elongata Himel1 dioecious) CGTCTAACGTCGTTTTGCCCAGAGTATCATTGCGCTGTCGGTGGTTCTTT
GAGACATGTACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCG
TGTTCAAACAATAAAACACACATGCACATACACACACACTTTATACTTGA
AGATCCTAATGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACT
TGTGTGAGGTTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCA
GTGCCTTACCGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAA
TCCCACCTCTACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGG
ACAGCAGCAGCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGG
GGGGGAGGGGGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTA
ATATTAGTTGCCGTGATGTCATCGAGCGGGATACCTACTGAACGTTTGCC
CGCGGTATGCGGTACGTCACTGGAGGGAATAAAAGTAGGGTAGATCGGAC
CGCCGCGATCTTGGTGAACGCGAAATCTCCCCCCCCAAAATCATCCCAAC
CCTAACCCTTACTGATCCTCTCCAATAGCTCGCCCTCGCTCGCCC back to topCoding sequence (CDS) from alignment at H-elongata_contig102819:1603..2247+ >mRNA_H-elongata_contig102819.243.1 ID=mRNA_H-elongata_contig102819.243.1|Name=mRNA_H-elongata_contig102819.243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig102819:1603..2247+ (Himanthalia elongata Himel1 dioecious) ATGTACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCGTGTTC AAACAATAAAACACACATGCACATACACACACACTTTATACTTGAAGATC CTAATGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACTTGTGT GAGGTTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCAGTGCC TTACCGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAATCCCA CCTCTACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGGACAGC AGCAGCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGGGGGGG AGGGGGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTAAATGT ACAGGCTGATTGTTCCCATCGAGAGAATATGCAAAATGGCGTGTTCAAAC AATAAAACACACATGCACATACACACACACTTTATACTTGAAGATCCTAA TGGTGCCAACTGTTGCTCCCTCCATCCTTCATATACTGACTTGTGTGAGG TTGTTGTTAATCCTGGAGGACGGAGAGCGACAATCAAATCAGTGCCTTAC CGGCTAGTCAGTAGGGGAGTAAAACACTACGGGGCTCAAAATCCCACCTC TACGCCAGTTCCCCTCCCGCGAGTTTCTCTCGACAATACGGACAGCAGCA GCCAACACCGCAAGCAACACGGGTTTTTTTTTCTGGTGGGGGGGGGAGGG GGGGGCATATATGATCTGTATTTTTCAATTCGCTGTTATTAA back to top
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