mRNA_H-elongata_contig102774.241.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102774.241.1
Unique NamemRNA_H-elongata_contig102774.241.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP 114
            YEI  +ETG+ YFVR+FA+NQM+GWG+AS TTP SM P
Sbjct: 8273 YEIVDVETGSQYFVRMFARNQMVGWGEASPTTPRSMVP 8310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNA6_ECTSI1.250e-968.42Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102774contigH-elongata_contig102774:606..719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog2880.D7FNA6
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.1218257-CDS-H-elongata_contig102774:605..7191622929565.1218257-CDS-H-elongata_contig102774:605..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102774 606..719 -
1691679072.6134014-CDS-H-elongata_contig102774:605..7191691679072.6134014-CDS-H-elongata_contig102774:605..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102774 606..719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102774.241.1prot_H-elongata_contig102774.241.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102774 606..719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102774.241.1

>prot_H-elongata_contig102774.241.1 ID=prot_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP
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mRNA from alignment at H-elongata_contig102774:606..719-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102774.241.1 ID=mRNA_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig102774:606..719- (Himanthalia elongata Himel1 dioecious)
TACGAGATCACAGGCCTGGAAACAGGTACCCTGTATTTCGTGCGGCTATT
TGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTCTTCTACAACGCCTG
TATCCATGACGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig102774:606..719-

>mRNA_H-elongata_contig102774.241.1 ID=mRNA_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig102774:606..719- (Himanthalia elongata Himel1 dioecious)
TACGAGATCACAGGCCTGGAAACAGGTACCCTGTATTTCGTGCGGCTATT
TGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTCTTCTACAACGCCTG
TATCCATGACGCCATACGAGATCACAGGCCTGGAAACAGGTACCCTGTAT
TTCGTGCGGCTATTTGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTC
TTCTACAACGCCTGTATCCATGACGCCA
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