mRNA_H-elongata_contig10274.237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig10274.237.1
Unique Name	mRNA_H-elongata_contig10274.237.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	132.9
Seed ortholog evalue	1e-28
Seed eggNOG ortholog	2880.D7FIA7
Preferred name	TTK
KEGG ko	ko:K08866,ko:K17388
KEGG Pathway	ko04022,ko04024,ko04062,ko04071,ko04110,ko04111,ko04270,ko04310,ko04360,ko04510,ko04530,ko04611,ko04670,ko04810,ko04921,ko05130,ko05131,ko05132,ko05200,ko05205,map04022,map04024,map04062,map04071,map04110,map04111,map04270,map04310,map04360,map04510,map04530,map04611,map04670,map04810,map04921,map05130,map05131,map05132,map05200,map05205
GOs	GO:0000003,GO:0000075,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007060,GO:0007088,GO:0007093,GO:0007094,GO:0007140,GO:0007143,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009611,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0010862,GO:0010948,GO:0010965,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016321,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030071,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031577,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0036211,GO:0040007,GO:0040020,GO:0042060,GO:0042127,GO:0042246,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043515,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044779,GO:0044877,GO:0045132,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045937,GO:0046777,GO:0046983,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051321,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060393,GO:0065007,GO:0065008,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090092,GO:0090100,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902850,GO:1903046,GO:1903047,GO:1903096,GO:1905132,GO:1905133,GO:1905359,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.	protein localization to meiotic spindle midzone
EggNOG OGs	KOG0596@1,KOG0596@2759
EC	2.7.11.1,2.7.12.1
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Protein kinase-like domain
Ec32 ortholog	Ec-11_001190.1
Exons	3
Model size	818
Cds size	363
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10274.237.1	prot_H-elongata_contig10274.237.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig10274 6437..7242 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929564.6666338-UTR-H-elongata_contig10274:5923..6377	1622929564.6666338-UTR-H-elongata_contig10274:5923..6377	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10274 5924..6377 -
1691679072.3943205-UTR-H-elongata_contig10274:5923..6377	1691679072.3943205-UTR-H-elongata_contig10274:5923..6377	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10274 5924..6377 -
1622929564.6855714-UTR-H-elongata_contig10274:6435..6436	1622929564.6855714-UTR-H-elongata_contig10274:6435..6436	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10274 6436..6436 -
1691679072.4091115-UTR-H-elongata_contig10274:6435..6436	1691679072.4091115-UTR-H-elongata_contig10274:6435..6436	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10274 6436..6436 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929564.7033937-CDS-H-elongata_contig10274:6436..6617	1622929564.7033937-CDS-H-elongata_contig10274:6436..6617	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10274 6437..6617 -
1691679072.4350564-CDS-H-elongata_contig10274:6436..6617	1691679072.4350564-CDS-H-elongata_contig10274:6436..6617	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10274 6437..6617 -
1622929564.7216883-CDS-H-elongata_contig10274:7060..7242	1622929564.7216883-CDS-H-elongata_contig10274:7060..7242	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10274 7061..7242 -
1691679072.4506876-CDS-H-elongata_contig10274:7060..7242	1691679072.4506876-CDS-H-elongata_contig10274:7060..7242	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10274 7061..7242 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10274:5924..7242-
coding sequence from alignment at H-elongata_contig10274:5924..7242-

protein sequence of mRNA_H-elongata_contig10274.237.1

>prot_H-elongata_contig10274.237.1 ID=prot_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MRTINTSLQYAKGAITAVDLVRYLEKDVASKVSGCDLDDVVAAALARIPD
TRKQDLLSKASRGRAIGPGGAAVSSGMSRGGSDVIVNGQCGNYAMSQGGQ
RVSSGKSTIYNGVEIGKEVR*

mRNA from alignment at H-elongata_contig10274:5924..7242-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10274.237.1 ID=mRNA_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-elongata_contig10274:5924..7242- (Himanthalia elongata Himel1 dioecious)
ATGCGGACGATTAACACTTCATTGCAGTATGCGAAGGGGGCCATCACCGC
TGTCGACCTGGTGCGGTATCTCGAAAAAGACGTAGCGAGTAAGGTGTCCG
GCTGTGATCTCGACGACGTCGTGGCAGCTGCGCTGGCGAGGATCCCCGAC
ACCCGTAAGCAAGATCTTCTCTCCAAGGCCAGGTGAGGTTTTGAAGCTAA
TCTAACCTGACCCTGCGAAGGTAGGCTTGTTAGCGCTTCAGCAGCAGCGC
CTACATCCGGGTTTTTCTGGACCCTGTTGGGACGCCACGCCAGCCAATGC
GACTGTCCATCGATCCACTCTAAGCCAATCATCTATGTGAGACACACAAA
ATATTAATACTTGATATAGCTTCAGAGTAGCAATAGAGAAGAGGATCCGT
GGTTCGATGGGGATATACTGAAGACCTCTCCACGCAGCGAGTAGCCTAAC
GGCCTCTCGAGTGGCTTAGACACACAGACGACCGGAAATTTTCCAGATCA
TATGCTCCTGAATTGGACTGGTTCATCGTGCACAGCGAGATGCGGCCAAT
GGAGCAGCGTGCTACGCCAGCCTAACGAAAATCCCTACCACCGCTATTCT
TGTATTTCAACACGCAAACGTCCAGTCGCGGGAGAGCTATCGGCCCCGGA
GGGGCAGCCGTGTCTTCTGGAATGTCGCGCGGGGGCTCGGACGTCATCGT
GAACGGGCAATGCGGAAATTATGCCATGAGCCAGGGGGGACAGCGAGTCA
GCAGCGGGAAAAGCACGATATACAACGGAGTGGAGATCGGGAAGGAGGTG
AGGTGAGGTGAGGCCTGCTTTATTTTTGTCTAGCTTGTTTACCGAAAGAG
GCACTCCTTGCCAAGAAGGTGTCCGGTTGGTTTGAGCCTTCGATAGGCAC
CTCGTCGTGGCTTTTTCCGGAATCGAACCAGGCCTCACCCGCGGTGCCTT
GATGCGACTCTACGAACATACGATTGGGTTAATTTCCCCCCAAGCGAACC
AAGAAATAATTTCCCGGAGAATGTCCAGATTACAAATTGACACCGCGTTT
TTGCGCGCGCGTTCGCCATCGATGAACGCGGGACAATCTCTCCTTCAAGC
AAGCTCACCCTTCTGTCTCTTCGCCCTCTAAGGTAATCAGAGTGACCGAA
CTGTCGCCAAGGTGGGCATGTCCGCGGACCCCGTAATCCCCACACCCTCG
CATTGCGATATCGTACTATGTAGCCCATCCCGTACGTGCAAATAAATTGT
GGGGTTTTGGTGGGGGGGCGAATGGACCAGGATGTACCGCTAAAGCTCAA
GGTAACCACGAGATCGAAC

Coding sequence (CDS) from alignment at H-elongata_contig10274:5924..7242-

>mRNA_H-elongata_contig10274.237.1 ID=mRNA_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10274:5924..7242- (Himanthalia elongata Himel1 dioecious)
ATGCGGACGATTAACACTTCATTGCAGTATGCGAAGGGGGCCATCACCGC
TGTCGACCTGGTGCGGTATCTCGAAAAAGACGTAGCGAGTAAGGTGTCCG
GCTGTGATCTCGACGACGTCGTGGCAGCTGCGCTGGCGAGGATCCCCGAC
ACCCGTAAGCAAGATCTTCTCTCCAAGGCCAGATGCGGACGATTAACACT
TCATTGCAGTATGCGAAGGGGGCCATCACCGCTGTCGACCTGGTGCGGTA
TCTCGAAAAAGACGTAGCGAGTAAGGTGTCCGGCTGTGATCTCGACGACG
TCGTGGCAGCTGCGCTGGCGAGGATCCCCGACACCCGTAAGCAAGATCTT
CTCTCCAAGGCCAGTCGCGGGAGAGCTATCGGCCCCGGAGGGGCAGCCGT
GTCTTCTGGAATGTCGCGCGGGGGCTCGGACGTCATCGTGAACGGGCAAT
GCGGAAATTATGCCATGAGCCAGGGGGGACAGCGAGTCAGCAGCGGGAAA
AGCACGATATACAACGGAGTGGAGATCGGGAAGGAGGTGAGGTGATCGCG
GGAGAGCTATCGGCCCCGGAGGGGCAGCCGTGTCTTCTGGAATGTCGCGC
GGGGGCTCGGACGTCATCGTGAACGGGCAATGCGGAAATTATGCCATGAG
CCAGGGGGGACAGCGAGTCAGCAGCGGGAAAAGCACGATATACAACGGAG
TGGAGATCGGGAAGGAGGTGAGGTGA

mRNA_H-elongata_contig10274.237.1 (mRNA) Himanthalia elongata Himel1 dioecious

ZOOM

x 1

POSITION

0