mRNA_H-elongata_contig102739.236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102739.236.1
Unique NamemRNA_H-elongata_contig102739.236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: D7FNS1_ECTSI (DAO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS1_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 1.460e-128
Identity = 200/305 (65.57%), Postives = 237/305 (77.70%), Query Frame = 1
Query:    1 PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACH---RAVSANRHGSGSATSMG------------GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLRLVLPAVAGGETGKPG-----KLMCGSTQEPVLP-RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVISPLEDL---STGEV 843
            PR CLTT +VYRPL DEKQ  LFTKAAEDLPQWVE LTREE  EAVPGS  +CLGGVRIRGALAVD+P YLKGLW AC     A  A+R+ SG  +S G            GATWVRQ V+D+H LAASGEF+AVVACVGAG K +AGVKDIVSLRL +      ETG  G     K++ GSTQEP +P + V++PP+MA+A+RQL PK+++ FPALEGV PVG ++GVRV+Q+R+ +GRIP+AGRLPFS+RGWVIAALGARGLIHHAYLG+LVAAC LLDSD  LPPQV++PLEDL   +TG++
Sbjct:   85 PRGCLTTNSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADRNASGGDSSGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVKALAGVKDIVSLRLYVVPTTVDETGAAGGGNGDKILLGSTQEPFMPGQKVDRPPDMAKALRQLRPKVARFFPALEGVTPVGCTAGVRVMQERSSYGRIPVAGRLPFSKRGWVIAALGARGLIHHAYLGKLVAACALLDSDDCLPPQVVAPLEDLGKDATGDL 389          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A6H5LDY8_9PHAE (DAO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY8_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 3.350e-119
Identity = 201/357 (56.30%), Postives = 239/357 (66.95%), Query Frame = 1
Query:    1 PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSA-----NRHGSGSATSMG---------GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLRLVL-------------PAVAGGET---------------------------------------------GKPGKLMCGSTQEPVLP-RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVISPLEDL---STGEV 843
            PR CLTT++VYRPL DEKQ  LFTKAAEDLPQWVE LTREE  EAVPGS  +CLGGVRIRGALAVD+P YLKGLW AC   V+A     N +G  S    G         GATWVRQ V+D+H LAASGEF+AVVACVGAG + +AGVKDIVSLRLV               A  GGE                                              G  GK++ GSTQEP +P + V++PP+MA+A+RQL PK+++ FPALEGV P+G ++GVRV+Q+R+ +GRIP+AGRLPFS+RGWVIAALGARGLIHHAYLG+LVAAC LLDSD HLPPQV++PLEDL   +TG++
Sbjct:  185 PRGCLTTDSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADVDRNANGDTSGGDNGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQTLLYDNVGAARAAEPGGEGAAXXXXXXXXXXXXXXXXXXXXXXXXXAVLCGQYVVPTTVDETGGGNGGKILLGSTQEPFMPGQKVDRPPDMAKALRQLRPKVARFFPALEGVTPIGCTAGVRVMQERSSYGRIPVAGRLPFSKRGWVIAALGARGLIHHAYLGKLVAACALLDSDDHLPPQVVAPLEDLGKDATGDL 541          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A835YVN0_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN0_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.120e-38
Identity = 105/308 (34.09%), Postives = 157/308 (50.97%), Query Frame = 1
Query:    4 RSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMG------------------------GATWVRQRVDDIHRLAASGEFDAVVACVGAGA-KVVAGVKD--------IVSLRLVLPAVA----GGETGKPGKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTP---KISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807
            ++ +T + + RP+ D + + ++ KAA   PQW+ +LT EE  +A PG++   L GV I GA+A+DS LYL+GLW+AC +     R  +G++TS+                         G +  +  VD   R + S E        GAGA   VAG+++         V  RL   AV     G   G    ++       V P     P   A AV + T    K+ + +PA    + + V++GVRVI+DR+++GRIP+AGR+P   R W +AALGARGLIHHA + R VAA  + D D  +P ++
Sbjct:  110 QTLITAQRIVRPIMDARAHDMYAKAAAANPQWLRWLTTEELCDAAPGTSPDALAGVEIAGAIAIDSRLYLRGLWEACRQ--GGRRSATGASTSIXXXXXXXXXXXSEAGGRASPSGERHGTSQSQVEVDTAKRRSESSEGSRSH---GAGAASAVAGLRNGGKGGGARWVHERLTQAAVGALVEGENAGFDAVVLAVGFDARVPP-----PRAAAAAVAERTALMQKVIEFYPAAANGDVLSVTAGVRVIRDRSKWGRIPLAGRVPGERRQWALAALGARGLIHHALIARSVAAAAICDDDSLIPQEL 407          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A0G4F9S4_VITBC (DAO domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F9S4_VITBC)

HSP 1 Score: 107 bits (266), Expect = 1.680e-22
Identity = 92/306 (30.07%), Postives = 143/306 (46.73%), Query Frame = 1
Query:    7 SCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLT--------REEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAA-SGEFDAVVACVGAGAKVV---AGVKDIVSLRLVL--------------PAVAGGETGKP---GKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERG----------WVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807
            + ++ ++++RP+  E+   ++ KA E  P  V++ T        RE+  +A  GS+     G+ I+  LAVD+ ++L+GLW        A R            +W R  V  +  L      FD V  C G G + +   AG+ D  SL  V                A+  GE   P   GK + G+T+E     D++ PP+ A+A   L PK+ +++  L  +   G +SGVRV+  RT  GRIP AGR+     G          W++ ALGARGL+   +LGR +A  +L   +  LP +V
Sbjct:   67 TVVSCDSLFRPIVTEQNEEIYRKAVEKRPDLVQWATLKDGRLMQREQQDKAEGGSD-----GILIKDGLAVDTIVFLRGLWKLICSRDGATR------------SWRRMSVRSLSTLRELDAAFDVVCLCNGVGMRYINGMAGLLDGSSLSFVRGQTLEYDTSGRELHAALLCGEWVVPRHDGKAIGGATKE-YSQDDLDAPPDAAKAEALLAPKLKRIYAPLSDLPVTGCTSGVRVLSPRTHHGRIPTAGRVKHLPSGEGDDAGLNNVWLMTALGARGLLWAPWLGRCLAEAILSQDETILPDEV 354          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: I0YIP3_COCSC (FAD dependent oxidoreductase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIP3_COCSC)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-15
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  508 RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807
            R V+ P  +  A  +L P+ +  +P     E VGV SGVR +  R+  G +P+AG+L    + WV+A LGARGL++HA+LGRL+A  VL D +  LP ++
Sbjct:  426 RAVSDPDEVTAAAAELVPRAAGAWPPAARWEMVGVRSGVRALPPRSAQGSLPLAGKLEAGRKWWVVAGLGARGLVYHAWLGRLIARAVLADDESELPGEL 525          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A8J9SFH8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SFH8_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 9.030e-15
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  508 RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807
            R V  P   A A  +L P+ S ++P +   + VGV SGVR +  R+  G +P+AG+L    + WV+A LGARGL++HA+LGRL+A     D +  LP ++
Sbjct:  530 RAVRDPAEAAAAAAELLPRASVVWPPVARWDVVGVRSGVRALPQRSAQGSLPLAGKLEGGRKWWVVAGLGARGLVYHAWLGRLIACAATTDDESVLPQEL 629          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: R0EU33_9BRAS (DAO domain-containing protein n=4 Tax=Camelineae TaxID=980083 RepID=R0EU33_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 1.630e-14
Identity = 80/270 (29.63%), Postives = 123/270 (45.56%), Query Frame = 1
Query:  100 VEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMG--GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLR--------LVLPAVAGG-ETGKPG-------------KLMCGST---QEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPF-------SERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807
            VE + R+     VP             GA+ V+  LYL+ L+ AC  + S         TS+G    T V++ +DD+  L   GE+DAVV C+G+    + G+   + LR        L LP  A G   G P               L  GST   Q      DV      ++A+ +L PK S ++P +E     G  +G+R +   T  G +P+ G +         S + WV A LG+RGL++HA+LG+L+A  VL   ++ +P ++
Sbjct:  180 VETIDRDAAQNLVPNLCLPLNCAFSFPGAMNVNPQLYLQALFLACQNSAS---------TSLGRKNVTLVKKSIDDVLEL--EGEYDAVVICLGSKVDFLTGLTGKLPLRTCRGVITHLQLPESARGYPDGGPSILSDAWLAVQGSRNLHMGSTWEWQSRNYSSDVTAE-EASRALAELLPKASAVYPDIENWRFAGARAGLRAMPPVTSHGSLPLLGCVNKLIGAAGESSKFWVFAGLGSRGLLYHAWLGKLMANAVLSCKEEQIPSEL 437          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A059CKU1_EUCGR (DAO domain-containing protein n=6 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CKU1_EUCGR)

HSP 1 Score: 82.8 bits (203), Expect = 2.670e-14
Identity = 81/304 (26.64%), Postives = 133/304 (43.75%), Query Frame = 1
Query:    7 SCLTTENVYRPLFDEKQYRLFTKAAEDLPQW--VEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAA-SGEFDAVVACVGAGAKVVAGVKDIVSLRLVLPAVAG-------GETGK----------------PGKLMCGSTQEPVLPRDVNKPPNMAQA---VRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLP------FSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVIS 813
            S +    + RP  D K   + T  A++   +  +E + ++     VP           +  A+ +    YL+ L+ AC   V        S +S GG      +   I RL+   GE+DAV+ C+GA A ++  +   + LR     +A        GET                  P  ++ GST E    R+ +   +  +A   ++QL PK S ++P ++    VG  +G+R +   T FG +P+ GR+        S + W    LGARGL++H  LGRL+A  VL + +  LP ++ S
Sbjct:  116 SIIRRRGILRPAMDAKHLSILTNNAQNCLPFCKIESIDKDAAEALVPNIKVPFNSVFHMPEAVNIHPLCYLQALFLACQDLVEEM-----STSSFGGKELYMHK-KSIDRLSDFEGEYDAVIVCLGAKADLLPELSGRLPLRTCRGVIAHLQLPDNVGETYPDHSPSILSDAWLAVQGPRDILVGSTWE-WKSRNYSSGVSAEEASTALKQLLPKASAIYPKIKDWSFVGAKAGIRAMPPLTSFGSLPVLGRIDDLVVGNHSCKYWFFGGLGARGLLYHGLLGRLMAQAVLFNDETLLPVELTS 412          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A2V3IQY7_9FLOR (Putative oxidoreductase YurR n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQY7_9FLOR)

HSP 1 Score: 81.3 bits (199), Expect = 1.070e-13
Identity = 72/295 (24.41%), Postives = 123/295 (41.69%), Query Frame = 1
Query:   28 VYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAAS--GEFDAVVACVGAGAKVVAGVKDI-------------------------VSLRLVLPAVAGGETGKPGKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPV--------GVSSGVRVIQDRTEFGRIPIAGRLPFSERG---WVIAALGARGLIHHAYLGRLVAACVLLDSDQHLP 798
            + R    EKQ+  F  AA   P  +E L   +  +  P    Q +  + ++ A  VD+P YL+ LW  C ++                  W RQ V D+  +  +    FD VV C GA    + G+  +                         +S + V+P + G   G+  +++ G+T E     D  +        R     +++L   L  + P         G SSG R +  R+  G IPI  +L  ++R    W+ + LG+RG++HHAYL R++A  ++  +++ +P
Sbjct:  165 ILRLALHEKQHNDFRIAAHRFPDELELLQPNQVADRFPHL-IQNVSAIFLKKAAVVDTPAYLQALWRLCQQSERIE--------------WRRQAVHDVRHILGNDTASFDTVVICAGAAIPTIEGLSHVPLRLCRGQNLLLKPREQSYAHETPVISGKYVVPDLFGHTPGQ--QIVAGATFEYDYQEDNPETFTQHLCKRDTDRALAELKQPLHDIAPGLIDKCTVHGTSSGTRALPPRSADGSIPIVCKLSGTDRNTSCWLFSGLGSRGVLHHAYLARMLAHAIVAGNERLIP 442          
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: UPI0009E4CCC2 (uncharacterized protein LOC110029269 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4CCC2)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-13
Identity = 69/241 (28.63%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  184 ALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLR--------LVLPAVAGGETGK--------------PGKLMCGSTQEPVLPR--DVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPI-------AGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVIS 813
            A+ +    YLK L+ AC     AN   S +A +M   +  ++ V+ +H L   GE+DAVV C+GA A+++  +   + LR        L LPA  G  + +              P  L+ GST +        +      A+A+++L PK+S ++P ++  E V   +G+R +   T FG +P+        GR   + R W++  LG+RGL+HH  +G+L+A  V+  ++  +P ++ S
Sbjct:  208 AMNIHPKRYLKALFMACKN--FANEVSS-TAQAMTEISLFKKHVERLHEL--DGEYDAVVICLGAKAEMLPELSGNLPLRNCRGIIAELELPADVGEYSDQSPSILSDAWLAFQGPQNLLMGSTWDWSSNNYSSLVSSSEAAEAMKELLPKVSVVYPNIKKWEFVRARAGLRAMPPLTPFGSLPLLGSVGEAVGRKGGNCRCWLVGGLGSRGLLHHGLMGKLIAGAVVSSNEGVIPSELTS 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNS1_ECTSI1.460e-12865.57DAO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LDY8_9PHAE3.350e-11956.30DAO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YVN0_9STRA3.120e-3834.09DAO domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0G4F9S4_VITBC1.680e-2230.07DAO domain-containing protein n=2 Tax=Vitrella bra... [more]
I0YIP3_COCSC1.330e-1542.00FAD dependent oxidoreductase n=1 Tax=Coccomyxa sub... [more]
A0A8J9SFH8_9CHLO9.030e-1541.00Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
R0EU33_9BRAS1.630e-1429.63DAO domain-containing protein n=4 Tax=Camelineae T... [more]
A0A059CKU1_EUCGR2.670e-1426.64DAO domain-containing protein n=6 Tax=Myrtoideae T... [more]
A0A2V3IQY7_9FLOR1.070e-1324.41Putative oxidoreductase YurR n=1 Tax=Gracilariopsi... [more]
UPI0009E4CCC21.400e-1328.63uncharacterized protein LOC110029269 n=1 Tax=Phala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102739contigH-elongata_contig102739:617..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue1.3e-103
Seed eggNOG ortholog2880.D7FNS1
EggNOG free text desc.FAD dependent oxidoreductase
EggNOG OGs2QQBA@2759,COG0665@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-01_004480.1
Exons4
Model size852
Cds size852
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102739.236.1prot_H-elongata_contig102739.236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102739 617..2106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.54142-CDS-H-elongata_contig102739:616..7821622929564.54142-CDS-H-elongata_contig102739:616..782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 617..782 +
1691679072.3479662-CDS-H-elongata_contig102739:616..7821691679072.3479662-CDS-H-elongata_contig102739:616..782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 617..782 +
1622929564.559332-CDS-H-elongata_contig102739:1036..13001622929564.559332-CDS-H-elongata_contig102739:1036..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1037..1300 +
1691679072.3680558-CDS-H-elongata_contig102739:1036..13001691679072.3680558-CDS-H-elongata_contig102739:1036..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1037..1300 +
1622929564.576122-CDS-H-elongata_contig102739:1483..16741622929564.576122-CDS-H-elongata_contig102739:1483..1674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1484..1674 +
1691679072.377378-CDS-H-elongata_contig102739:1483..16741691679072.377378-CDS-H-elongata_contig102739:1483..1674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1484..1674 +
1622929564.5915673-CDS-H-elongata_contig102739:1875..21061622929564.5915673-CDS-H-elongata_contig102739:1875..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1876..2106 +
1691679072.3853378-CDS-H-elongata_contig102739:1875..21061691679072.3853378-CDS-H-elongata_contig102739:1875..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102739 1876..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102739.236.1

>prot_H-elongata_contig102739.236.1 ID=prot_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSN
TQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATW
VRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLRLVLPAVAGG
ETGKPGKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVE
PVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLG
RLVAACVLLDSDQHLPPQVISPLEDLSTGEVDL*
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mRNA from alignment at H-elongata_contig102739:617..2106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102739.236.1 ID=mRNA_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-elongata_contig102739:617..2106+ (Himanthalia elongata Himel1 dioecious)
CCGCGCAGTTGCCTCACGACGGAAAATGTATACCGTCCACTCTTCGATGA AAAACAGTATCGCCTGTTTACCAAAGCTGCCGAGGACTTGCCGCAGTGGG TGGAGTATCTCACACGAGAGGAGTTCTTCGAGGCCGTCCCTGGTTCGAAC ACCCAGTGCCTTGGAGGTGAACGTCGCTGAAACAGTTGTAGGTACCGGAG TACATTCCCCCGCAAACGGTCACCGCACGATTGATCAATCGTAAAATTAT TATGTGCTACGAACGCTGCGGGAAGAAAATTATATGATGTCTGCATTGCA CACTTTGCCTTATGGACTTTGCGGAAAGCACTTGATTCACAAAGACTCGG TACCAGAGACTGGGACGATATTCTCGATGCGTGCGTGCCTCCCGGCTCCC CATGGGGCTCCTTTGAACAGGCGTGCGCATTCGTGGAGCATTGGCGGTAG ACTCCCCGTTGTACCTGAAGGGTCTTTGGGATGCGTGCCATCGAGCGGTT AGCGCCAACCGTCACGGCAGCGGCAGCGCTACCTCTATGGGGGGGGCGAC GTGGGTGCGCCAGCGCGTTGACGACATCCACAGGTTGGCGGCGTCGGGAG AGTTTGACGCAGTGGTGGCTTGCGTCGGGGCGGGCGCCAAAGTGGTCGCT GGGGTAAAGGATATTGTCAGCCTCAGACTGGTCCGTGGTCAAACTCTTTT TTACGACAACGTCAACCCGGAGCGATTGACGCCACCATTGACGTCAGGAC CTTCGACGGACGATCCCGTCTTGATTGGGCGAAAGGCGGCGGCGGCGGAG GATGGAGCTGTTAGCGCGAGTGATGGCAAGATGTTGAAAAGCGCGGTCCT ATGTGGACAATACGTAGTGCCCGCGGTGGCAGGCGGAGAGACTGGGAAGC CGGGGAAGCTAATGTGCGGATCGACGCAAGAACCGGTTTTGCCCCGGGAT GTAAACAAGCCGCCCAACATGGCCCAGGCTGTGCGGCAATTAACTCCAAA AATCTCCAAATTGTTCCCTGCTCTCGAGGGCGTTGAACCAGTGGGAGTGT CGTCCGGGGTAAGTCACGCTCGCTCAGGTTCTTGCGAGTACACGTGCAAT TTTCGGTGGTTGGCGTGCAAGGTCCTCCAAGTCATTACGGTGCAAACCTC TGCCAAAAAATAGGGACGAAGGCTGTTTTGTATGCACCATCATCTTGTAA CGAAAGGAGCGTTTTAACCGCGCCATCACATACTTCTTCACGCCCTCGCC GCACTACAGGTCCGAGTCATCCAAGATCGGACAGAGTTTGGGCGCATTCC AATCGCGGGTCGTCTTCCATTCTCGGAACGAGGGTGGGTTATCGCTGCCC TTGGGGCTCGTGGCCTCATTCACCACGCGTATTTGGGTCGCTTGGTCGCG GCGTGTGTACTGCTAGATTCGGACCAGCACCTGCCACCGCAGGTGATCTC TCCGCTCGAGGACCTGTCAACGGGCGAAGTAGACCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig102739:617..2106+

>mRNA_H-elongata_contig102739.236.1 ID=mRNA_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig102739:617..2106+ (Himanthalia elongata Himel1 dioecious)
CCGCGCAGTTGCCTCACGACGGAAAATGTATACCGTCCACTCTTCGATGA
AAAACAGTATCGCCTGTTTACCAAAGCTGCCGAGGACTTGCCGCAGTGGG
TGGAGTATCTCACACGAGAGGAGTTCTTCGAGGCCGTCCCTGGTTCGAAC
ACCCAGTGCCTTGGAGCCGCGCAGTTGCCTCACGACGGAAAATGTATACC
GTCCACTCTTCGATGAAAAACAGTATCGCCTGTTTACCAAAGCTGCCGAG
GACTTGCCGCAGTGGGTGGAGTATCTCACACGAGAGGAGTTCTTCGAGGC
CGTCCCTGGTTCGAACACCCAGTGCCTTGGAGGCGTGCGCATTCGTGGAG
CATTGGCGGTAGACTCCCCGTTGTACCTGAAGGGTCTTTGGGATGCGTGC
CATCGAGCGGTTAGCGCCAACCGTCACGGCAGCGGCAGCGCTACCTCTAT
GGGGGGGGCGACGTGGGTGCGCCAGCGCGTTGACGACATCCACAGGTTGG
CGGCGTCGGGAGAGTTTGACGCAGTGGTGGCTTGCGTCGGGGCGGGCGCC
AAAGTGGTCGCTGGGGTAAAGGATATTGTCAGCCTCAGACTGGTCCGCGT
GCGCATTCGTGGAGCATTGGCGGTAGACTCCCCGTTGTACCTGAAGGGTC
TTTGGGATGCGTGCCATCGAGCGGTTAGCGCCAACCGTCACGGCAGCGGC
AGCGCTACCTCTATGGGGGGGGCGACGTGGGTGCGCCAGCGCGTTGACGA
CATCCACAGGTTGGCGGCGTCGGGAGAGTTTGACGCAGTGGTGGCTTGCG
TCGGGGCGGGCGCCAAAGTGGTCGCTGGGGTAAAGGATATTGTCAGCCTC
AGACTGGTCCTGCCCGCGGTGGCAGGCGGAGAGACTGGGAAGCCGGGGAA
GCTAATGTGCGGATCGACGCAAGAACCGGTTTTGCCCCGGGATGTAAACA
AGCCGCCCAACATGGCCCAGGCTGTGCGGCAATTAACTCCAAAAATCTCC
AAATTGTTCCCTGCTCTCGAGGGCGTTGAACCAGTGGGAGTGTCGTCCGG
GTGCCCGCGGTGGCAGGCGGAGAGACTGGGAAGCCGGGGAAGCTAATGTG
CGGATCGACGCAAGAACCGGTTTTGCCCCGGGATGTAAACAAGCCGCCCA
ACATGGCCCAGGCTGTGCGGCAATTAACTCCAAAAATCTCCAAATTGTTC
CCTGCTCTCGAGGGCGTTGAACCAGTGGGAGTGTCGTCCGGGGTCCGAGT
CATCCAAGATCGGACAGAGTTTGGGCGCATTCCAATCGCGGGTCGTCTTC
CATTCTCGGAACGAGGGTGGGTTATCGCTGCCCTTGGGGCTCGTGGCCTC
ATTCACCACGCGTATTTGGGTCGCTTGGTCGCGGCGTGTGTACTGCTAGA
TTCGGACCAGCACCTGCCACCGCAGGTGATCTCTCCGCTCGAGGACCTGT
CAACGGGCGAAGTAGACCTTTGAGTCCGAGTCATCCAAGATCGGACAGAG
TTTGGGCGCATTCCAATCGCGGGTCGTCTTCCATTCTCGGAACGAGGGTG
GGTTATCGCTGCCCTTGGGGCTCGTGGCCTCATTCACCACGCGTATTTGG
GTCGCTTGGTCGCGGCGTGTGTACTGCTAGATTCGGACCAGCACCTGCCA
CCGCAGGTGATCTCTCCGCTCGAGGACCTGTCAACGGGCGAAGTAGACCT
TTGA
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