mRNA_H-elongata_contig102739.236.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: D7FNS1_ECTSI (DAO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS1_ECTSI) HSP 1 Score: 379 bits (974), Expect = 1.460e-128 Identity = 200/305 (65.57%), Postives = 237/305 (77.70%), Query Frame = 1 Query: 1 PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACH---RAVSANRHGSGSATSMG------------GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLRLVLPAVAGGETGKPG-----KLMCGSTQEPVLP-RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVISPLEDL---STGEV 843 PR CLTT +VYRPL DEKQ LFTKAAEDLPQWVE LTREE EAVPGS +CLGGVRIRGALAVD+P YLKGLW AC A A+R+ SG +S G GATWVRQ V+D+H LAASGEF+AVVACVGAG K +AGVKDIVSLRL + ETG G K++ GSTQEP +P + V++PP+MA+A+RQL PK+++ FPALEGV PVG ++GVRV+Q+R+ +GRIP+AGRLPFS+RGWVIAALGARGLIHHAYLG+LVAAC LLDSD LPPQV++PLEDL +TG++ Sbjct: 85 PRGCLTTNSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADRNASGGDSSGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVKALAGVKDIVSLRLYVVPTTVDETGAAGGGNGDKILLGSTQEPFMPGQKVDRPPDMAKALRQLRPKVARFFPALEGVTPVGCTAGVRVMQERSSYGRIPVAGRLPFSKRGWVIAALGARGLIHHAYLGKLVAACALLDSDDCLPPQVVAPLEDLGKDATGDL 389
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A6H5LDY8_9PHAE (DAO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY8_9PHAE) HSP 1 Score: 361 bits (926), Expect = 3.350e-119 Identity = 201/357 (56.30%), Postives = 239/357 (66.95%), Query Frame = 1 Query: 1 PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSA-----NRHGSGSATSMG---------GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLRLVL-------------PAVAGGET---------------------------------------------GKPGKLMCGSTQEPVLP-RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVISPLEDL---STGEV 843 PR CLTT++VYRPL DEKQ LFTKAAEDLPQWVE LTREE EAVPGS +CLGGVRIRGALAVD+P YLKGLW AC V+A N +G S G GATWVRQ V+D+H LAASGEF+AVVACVGAG + +AGVKDIVSLRLV A GGE G GK++ GSTQEP +P + V++PP+MA+A+RQL PK+++ FPALEGV P+G ++GVRV+Q+R+ +GRIP+AGRLPFS+RGWVIAALGARGLIHHAYLG+LVAAC LLDSD HLPPQV++PLEDL +TG++ Sbjct: 185 PRGCLTTDSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADVDRNANGDTSGGDNGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQTLLYDNVGAARAAEPGGEGAAXXXXXXXXXXXXXXXXXXXXXXXXXAVLCGQYVVPTTVDETGGGNGGKILLGSTQEPFMPGQKVDRPPDMAKALRQLRPKVARFFPALEGVTPIGCTAGVRVMQERSSYGRIPVAGRLPFSKRGWVIAALGARGLIHHAYLGKLVAACALLDSDDHLPPQVVAPLEDLGKDATGDL 541
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A835YVN0_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN0_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.120e-38 Identity = 105/308 (34.09%), Postives = 157/308 (50.97%), Query Frame = 1 Query: 4 RSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMG------------------------GATWVRQRVDDIHRLAASGEFDAVVACVGAGA-KVVAGVKD--------IVSLRLVLPAVA----GGETGKPGKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTP---KISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807 ++ +T + + RP+ D + + ++ KAA PQW+ +LT EE +A PG++ L GV I GA+A+DS LYL+GLW+AC + R +G++TS+ G + + VD R + S E GAGA VAG+++ V RL AV G G ++ V P P A AV + T K+ + +PA + + V++GVRVI+DR+++GRIP+AGR+P R W +AALGARGLIHHA + R VAA + D D +P ++ Sbjct: 110 QTLITAQRIVRPIMDARAHDMYAKAAAANPQWLRWLTTEELCDAAPGTSPDALAGVEIAGAIAIDSRLYLRGLWEACRQ--GGRRSATGASTSIXXXXXXXXXXXSEAGGRASPSGERHGTSQSQVEVDTAKRRSESSEGSRSH---GAGAASAVAGLRNGGKGGGARWVHERLTQAAVGALVEGENAGFDAVVLAVGFDARVPP-----PRAAAAAVAERTALMQKVIEFYPAAANGDVLSVTAGVRVIRDRSKWGRIPLAGRVPGERRQWALAALGARGLIHHALIARSVAAAAICDDDSLIPQEL 407
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A0G4F9S4_VITBC (DAO domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F9S4_VITBC) HSP 1 Score: 107 bits (266), Expect = 1.680e-22 Identity = 92/306 (30.07%), Postives = 143/306 (46.73%), Query Frame = 1 Query: 7 SCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLT--------REEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAA-SGEFDAVVACVGAGAKVV---AGVKDIVSLRLVL--------------PAVAGGETGKP---GKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERG----------WVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807 + ++ ++++RP+ E+ ++ KA E P V++ T RE+ +A GS+ G+ I+ LAVD+ ++L+GLW A R +W R V + L FD V C G G + + AG+ D SL V A+ GE P GK + G+T+E D++ PP+ A+A L PK+ +++ L + G +SGVRV+ RT GRIP AGR+ G W++ ALGARGL+ +LGR +A +L + LP +V Sbjct: 67 TVVSCDSLFRPIVTEQNEEIYRKAVEKRPDLVQWATLKDGRLMQREQQDKAEGGSD-----GILIKDGLAVDTIVFLRGLWKLICSRDGATR------------SWRRMSVRSLSTLRELDAAFDVVCLCNGVGMRYINGMAGLLDGSSLSFVRGQTLEYDTSGRELHAALLCGEWVVPRHDGKAIGGATKE-YSQDDLDAPPDAAKAEALLAPKLKRIYAPLSDLPVTGCTSGVRVLSPRTHHGRIPTAGRVKHLPSGEGDDAGLNNVWLMTALGARGLLWAPWLGRCLAEAILSQDETILPDEV 354
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: I0YIP3_COCSC (FAD dependent oxidoreductase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIP3_COCSC) HSP 1 Score: 87.0 bits (214), Expect = 1.330e-15 Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 508 RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807 R V+ P + A +L P+ + +P E VGV SGVR + R+ G +P+AG+L + WV+A LGARGL++HA+LGRL+A VL D + LP ++ Sbjct: 426 RAVSDPDEVTAAAAELVPRAAGAWPPAARWEMVGVRSGVRALPPRSAQGSLPLAGKLEAGRKWWVVAGLGARGLVYHAWLGRLIARAVLADDESELPGEL 525
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A8J9SFH8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SFH8_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 9.030e-15 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 508 RDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807 R V P A A +L P+ S ++P + + VGV SGVR + R+ G +P+AG+L + WV+A LGARGL++HA+LGRL+A D + LP ++ Sbjct: 530 RAVRDPAEAAAAAAELLPRASVVWPPVARWDVVGVRSGVRALPQRSAQGSLPLAGKLEGGRKWWVVAGLGARGLVYHAWLGRLIACAATTDDESVLPQEL 629
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: R0EU33_9BRAS (DAO domain-containing protein n=4 Tax=Camelineae TaxID=980083 RepID=R0EU33_9BRAS) HSP 1 Score: 83.6 bits (205), Expect = 1.630e-14 Identity = 80/270 (29.63%), Postives = 123/270 (45.56%), Query Frame = 1 Query: 100 VEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMG--GATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLR--------LVLPAVAGG-ETGKPG-------------KLMCGST---QEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLPF-------SERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQV 807 VE + R+ VP GA+ V+ LYL+ L+ AC + S TS+G T V++ +DD+ L GE+DAVV C+G+ + G+ + LR L LP A G G P L GST Q DV ++A+ +L PK S ++P +E G +G+R + T G +P+ G + S + WV A LG+RGL++HA+LG+L+A VL ++ +P ++ Sbjct: 180 VETIDRDAAQNLVPNLCLPLNCAFSFPGAMNVNPQLYLQALFLACQNSAS---------TSLGRKNVTLVKKSIDDVLEL--EGEYDAVVICLGSKVDFLTGLTGKLPLRTCRGVITHLQLPESARGYPDGGPSILSDAWLAVQGSRNLHMGSTWEWQSRNYSSDVTAE-EASRALAELLPKASAVYPDIENWRFAGARAGLRAMPPVTSHGSLPLLGCVNKLIGAAGESSKFWVFAGLGSRGLLYHAWLGKLMANAVLSCKEEQIPSEL 437
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A059CKU1_EUCGR (DAO domain-containing protein n=6 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CKU1_EUCGR) HSP 1 Score: 82.8 bits (203), Expect = 2.670e-14 Identity = 81/304 (26.64%), Postives = 133/304 (43.75%), Query Frame = 1 Query: 7 SCLTTENVYRPLFDEKQYRLFTKAAEDLPQW--VEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAA-SGEFDAVVACVGAGAKVVAGVKDIVSLRLVLPAVAG-------GETGK----------------PGKLMCGSTQEPVLPRDVNKPPNMAQA---VRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPIAGRLP------FSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVIS 813 S + + RP D K + T A++ + +E + ++ VP + A+ + YL+ L+ AC V S +S GG + I RL+ GE+DAV+ C+GA A ++ + + LR +A GET P ++ GST E R+ + + +A ++QL PK S ++P ++ VG +G+R + T FG +P+ GR+ S + W LGARGL++H LGRL+A VL + + LP ++ S Sbjct: 116 SIIRRRGILRPAMDAKHLSILTNNAQNCLPFCKIESIDKDAAEALVPNIKVPFNSVFHMPEAVNIHPLCYLQALFLACQDLVEEM-----STSSFGGKELYMHK-KSIDRLSDFEGEYDAVIVCLGAKADLLPELSGRLPLRTCRGVIAHLQLPDNVGETYPDHSPSILSDAWLAVQGPRDILVGSTWE-WKSRNYSSGVSAEEASTALKQLLPKASAIYPKIKDWSFVGAKAGIRAMPPLTSFGSLPVLGRIDDLVVGNHSCKYWFFGGLGARGLLYHGLLGRLMAQAVLFNDETLLPVELTS 412
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: A0A2V3IQY7_9FLOR (Putative oxidoreductase YurR n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQY7_9FLOR) HSP 1 Score: 81.3 bits (199), Expect = 1.070e-13 Identity = 72/295 (24.41%), Postives = 123/295 (41.69%), Query Frame = 1 Query: 28 VYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNTQCLGGVRIRGALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAAS--GEFDAVVACVGAGAKVVAGVKDI-------------------------VSLRLVLPAVAGGETGKPGKLMCGSTQEPVLPRDVNKPPNMAQAVRQLTPKISKLFPALEGVEPV--------GVSSGVRVIQDRTEFGRIPIAGRLPFSERG---WVIAALGARGLIHHAYLGRLVAACVLLDSDQHLP 798 + R EKQ+ F AA P +E L + + P Q + + ++ A VD+P YL+ LW C ++ W RQ V D+ + + FD VV C GA + G+ + +S + V+P + G G+ +++ G+T E D + R +++L L + P G SSG R + R+ G IPI +L ++R W+ + LG+RG++HHAYL R++A ++ +++ +P Sbjct: 165 ILRLALHEKQHNDFRIAAHRFPDELELLQPNQVADRFPHL-IQNVSAIFLKKAAVVDTPAYLQALWRLCQQSERIE--------------WRRQAVHDVRHILGNDTASFDTVVICAGAAIPTIEGLSHVPLRLCRGQNLLLKPREQSYAHETPVISGKYVVPDLFGHTPGQ--QIVAGATFEYDYQEDNPETFTQHLCKRDTDRALAELKQPLHDIAPGLIDKCTVHGTSSGTRALPPRSADGSIPIVCKLSGTDRNTSCWLFSGLGSRGVLHHAYLARMLAHAIVAGNERLIP 442
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Match: UPI0009E4CCC2 (uncharacterized protein LOC110029269 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4CCC2) HSP 1 Score: 80.9 bits (198), Expect = 1.400e-13 Identity = 69/241 (28.63%), Postives = 119/241 (49.38%), Query Frame = 1 Query: 184 ALAVDSPLYLKGLWDACHRAVSANRHGSGSATSMGGATWVRQRVDDIHRLAASGEFDAVVACVGAGAKVVAGVKDIVSLR--------LVLPAVAGGETGK--------------PGKLMCGSTQEPVLPR--DVNKPPNMAQAVRQLTPKISKLFPALEGVEPVGVSSGVRVIQDRTEFGRIPI-------AGRLPFSERGWVIAALGARGLIHHAYLGRLVAACVLLDSDQHLPPQVIS 813 A+ + YLK L+ AC AN S +A +M + ++ V+ +H L GE+DAVV C+GA A+++ + + LR L LPA G + + P L+ GST + + A+A+++L PK+S ++P ++ E V +G+R + T FG +P+ GR + R W++ LG+RGL+HH +G+L+A V+ ++ +P ++ S Sbjct: 208 AMNIHPKRYLKALFMACKN--FANEVSS-TAQAMTEISLFKKHVERLHEL--DGEYDAVVICLGAKAEMLPELSGNLPLRNCRGIIAELELPADVGEYSDQSPSILSDAWLAFQGPQNLLMGSTWDWSSNNYSSLVSSSEAAEAMKELLPKVSVVYPNIKKWEFVRARAGLRAMPPLTPFGSLPLLGSVGEAVGRKGGNCRCWLVGGLGSRGLLHHGLMGKLIAGAVVSSNEGVIPSELTS 443 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102739.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102739.236.1 >prot_H-elongata_contig102739.236.1 ID=prot_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp PRSCLTTENVYRPLFDEKQYRLFTKAAEDLPQWVEYLTREEFFEAVPGSNback to top mRNA from alignment at H-elongata_contig102739:617..2106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102739.236.1 ID=mRNA_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-elongata_contig102739:617..2106+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102739:617..2106+ >mRNA_H-elongata_contig102739.236.1 ID=mRNA_H-elongata_contig102739.236.1|Name=mRNA_H-elongata_contig102739.236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig102739:617..2106+ (Himanthalia elongata Himel1 dioecious)back to top |