mRNA_H-elongata_contig102717.233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102717.233.1
Unique NamemRNA_H-elongata_contig102717.233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: D7FN56_ECTSI (S-adenosylmethionine synthase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D7FN56_ECTSI)

HSP 1 Score: 427 bits (1097), Expect = 3.130e-148
Identity = 204/219 (93.15%), Postives = 215/219 (98.17%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVTVAYK+E+GRMVPQRVHTVVISTQHDDDVSNEKIRADL EHV+K VVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLV AGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAK RSGKTDEE+VEIINNNFDLRPGCL+RDLQLR+P+++KTAAYGHFGRSDP+FTWETPKDLT+
Sbjct:  179 QVTVAYKEENGRMVPQRVHTVVISTQHDDDVSNEKIRADLQEHVIKHVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVHAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKTRSGKTDEELVEIINNNFDLRPGCLLRDLQLRKPIFRKTAAYGHFGRSDPEFTWETPKDLTL 397          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: B7ZGN6_9PHAE (S-adenosylmethionine synthase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN6_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 2.600e-147
Identity = 201/219 (91.78%), Postives = 213/219 (97.26%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVTVAYK+E+GRMVPQRVHTVVIS QHDDDVSNEKIRADLMEHV+K VVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLV+AGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAK RSGK+DE++VEIINNNFDLRPGCL+RDL LRRP++QKTAAYGHFGR+D DFTWE PKDLT+
Sbjct:   89 QVTVAYKEENGRMVPQRVHTVVISCQHDDDVSNEKIRADLMEHVIKHVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVSAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKTRSGKSDEDLVEIINNNFDLRPGCLLRDLSLRRPIFQKTAAYGHFGRTDADFTWEVPKDLTL 307          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: A0A835ZJ70_9STRA (S-adenosylmethionine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ70_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 9.510e-134
Identity = 186/217 (85.71%), Postives = 205/217 (94.47%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDL 651
            QVTV YK+EDGRMVP RVHTVVISTQH++DV+NEKIRADLMEHV+K V+PAKYLD +TI+HLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKSLV+AGLCHRVLVQLSYAIGVPYPLS+HVDSYGTA  RSGK+D ++V+IIN+NFDLRPGC+VRDLQLRRP++QKTAAY HFGR D DFTWE PK+L
Sbjct:  182 QVTVEYKEEDGRMVPVRVHTVVISTQHNEDVTNEKIRADLMEHVIKPVIPAKYLDANTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVSAGLCHRVLVQLSYAIGVPYPLSVHVDSYGTAMSRSGKSDFDLVKIINDNFDLRPGCIVRDLQLRRPIFQKTAAYCHFGRDDADFTWEVPKEL 398          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: A0A7S2XXK2_9STRA (S-adenosylmethionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXK2_9STRA)

HSP 1 Score: 373 bits (957), Expect = 1.500e-129
Identity = 176/219 (80.37%), Postives = 201/219 (91.78%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVTV YK E G+ VPQRVHTVVISTQH ++V+N+KI+ DLMEHV+K V+P KYLDD+T+YHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYA RWVAKSLV AGLC RVLVQLSYAIGVPYPLS+HVDSYGT+K   GKTD E+VEI+N NFDLRPGC+VRDLQLRRP++++T+AYGHFGR++PDFTWET K+L++
Sbjct:    9 QVTVEYKFEGGKPVPQRVHTVVISTQHSEEVTNDKIKEDLMEHVIKPVIPEKYLDDNTVYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAGRWVAKSLVAAGLCDRVLVQLSYAIGVPYPLSVHVDSYGTSK---GKTDVELVEIVNKNFDLRPGCIVRDLQLRRPIFKQTSAYGHFGRNNPDFTWETVKELSL 224          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: W7TSQ4_9STRA (S-adenosylmethionine synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSQ4_9STRA)

HSP 1 Score: 370 bits (949), Expect = 8.430e-126
Identity = 180/219 (82.19%), Postives = 193/219 (88.13%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVTV YK E GR VPQRVHTVVISTQH +DV+ EKIR DL+EHV+K VVPAKYLDD TIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKSLV AGLCHRVLVQLSYAIGV +PLS+ VDSYGTAK RSGKTD E+ +I+  NFDLRPGC+ RDL L+RP+  KTAAYGHFGR+DPDFTWE  K L I
Sbjct:  175 QVTVEYKVEGGRPVPQRVHTVVISTQHSEDVTLEKIREDLLEHVIKPVVPAKYLDDKTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVAAGLCHRVLVQLSYAIGVAHPLSVFVDSYGTAKTRSGKTDTELCKIVEKNFDLRPGCIQRDLNLKRPIMTKTAAYGHFGRNDPDFTWEQVKTLEI 393          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: M4BQ36_HYAAE (S-adenosylmethionine synthase n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BQ36_HYAAE)

HSP 1 Score: 362 bits (928), Expect = 8.510e-122
Identity = 176/217 (81.11%), Postives = 193/217 (88.94%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDL 651
            QVTV YKKEDG MVPQRVHTVVISTQH+DDV+NE+I ADLM+HV++ V+P KYLDD T+YHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKS+V  GL HR+LVQLSYAIGVPYPLSIHVDSYGT K   G +D+E+VEII  NFDLRPG + + LQL+RPV QKTAAYGHFGR D DFTWET K+L
Sbjct:  177 QVTVEYKKEDGCMVPQRVHTVVISTQHNDDVTNEQIAADLMKHVIQTVIPEKYLDDKTVYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSVVAKGLAHRLLVQLSYAIGVPYPLSIHVDSYGTVK--KGLSDDELVEIIKKNFDLRPGMIQKSLQLKRPVMQKTAAYGHFGREDADFTWETVKEL 391          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: H3GA19_PHYRM (S-adenosylmethionine synthase n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3GA19_PHYRM)

HSP 1 Score: 359 bits (922), Expect = 1.020e-121
Identity = 174/219 (79.45%), Postives = 194/219 (88.58%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVTV YK+EDGRM+PQRVHTVVISTQH+DDV+NE+I ADLM+HV++ V+P KYLDD T+YHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKS+V  GL  R+LVQLSYAIGVPYPLSIHVDSYGT K   G +D+E+VEII  NFDLRPG + + LQL+RPV QKTAAYGHFGR D DFTWET K+L +
Sbjct:  176 QVTVEYKQEDGRMIPQRVHTVVISTQHNDDVTNEQIAADLMKHVIQTVIPEKYLDDKTVYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSVVAKGLASRLLVQLSYAIGVPYPLSIHVDSYGTVK--EGLSDDELVEIIKKNFDLRPGMIQKTLQLKRPVMQKTAAYGHFGREDVDFTWETVKELEL 392          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: F0YMD4_AURAN (S-adenosylmethionine synthase n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YMD4_AURAN)

HSP 1 Score: 358 bits (920), Expect = 1.870e-121
Identity = 172/219 (78.54%), Postives = 189/219 (86.30%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVT  YK + GR +PQRVHT+VISTQH + VS E+IR  LME VV+ VVP KYLDDDTIYH+NPSGRF+IGGPHGDAGLTGRKI++DTYGGWG HGGGA SGKD TKVDRSAAYAARWVAKSLV A LCHRVLVQL+YAIGV YP+SIHVDSYGT    SGKTD E+VEII  NFDLRPGC+VRDLQLRRPV QKTAAYGHFGR D  FTWETPK+L++
Sbjct:  171 QVTCEYKMKAGRPLPQRVHTIVISTQHTEAVSQEQIRESLMEQVVRAVVPGKYLDDDTIYHMNPSGRFIIGGPHGDAGLTGRKIVVDTYGGWGTHGGGALSGKDTTKVDRSAAYAARWVAKSLVNARLCHRVLVQLAYAIGVAYPISIHVDSYGTGPSLSGKTDVELVEIIKANFDLRPGCIVRDLQLRRPVMQKTAAYGHFGRDDDSFTWETPKELSL 389          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: A0A7S0PYC0_9EUKA (S-adenosylmethionine synthase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYC0_9EUKA)

HSP 1 Score: 356 bits (913), Expect = 2.020e-120
Identity = 171/219 (78.08%), Postives = 191/219 (87.21%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDLTI 657
            QVT  Y+ E GR +P RVHTVVISTQH +D++ E+I+A LMEHVVK VVPA+YLD+ T+YHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKSLV AGL HR LVQLSYAIGV +PLS+ VD+YGT   RS KTD +I EI+ NNFDLRPG ++RDL LRRPV +KTAAYGHFGR+DPDFTWETPK LT+
Sbjct:  169 QVTCEYRMEGGRPIPIRVHTVVISTQHSEDITQEEIKAQLMEHVVKAVVPAEYLDEKTVYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVAAGLAHRCLVQLSYAIGVSHPLSVFVDTYGTGMTRSQKTDAQITEIVKNNFDLRPGGIIRDLDLRRPVLKKTAAYGHFGRADPDFTWETPKVLTL 387          
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Match: B9ZZX2_9STRA (S-adenosylmethionine synthase n=10 Tax=Bacillariophyta TaxID=2836 RepID=B9ZZX2_9STRA)

HSP 1 Score: 355 bits (910), Expect = 5.210e-120
Identity = 170/217 (78.34%), Postives = 190/217 (87.56%), Query Frame = 1
Query:    1 QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVPAKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHVDSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYGHFGRSDPDFTWETPKDL 651
            QVT  YK  DG  VPQRVHT+VISTQH +DV+N++I +DLMEHV+K VVP KYLDD TIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKD TKVDRSAAYAARWVAKSLV AGLC R LVQLSYAIGVPYPLS+ VDSYGT  +  GK+D ++ +I+N+NFDLRPGC++RDL L+RPV +KTAAYGHFGR DPDFTWE  K+L
Sbjct:  168 QVTCEYKLVDGVPVPQRVHTIVISTQHSEDVTNDQISSDLMEHVIKPVVPEKYLDDKTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVAAGLCKRALVQLSYAIGVPYPLSVFVDSYGT--VTEGKSDSDLTDIVNSNFDLRPGCIIRDLDLKRPVMRKTAAYGHFGRDDPDFTWEKVKEL 382          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102717.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN56_ECTSI3.130e-14893.15S-adenosylmethionine synthase n=3 Tax=Phaeophyceae... [more]
B7ZGN6_9PHAE2.600e-14791.78S-adenosylmethionine synthase (Fragment) n=1 Tax=L... [more]
A0A835ZJ70_9STRA9.510e-13485.71S-adenosylmethionine synthase n=1 Tax=Tribonema mi... [more]
A0A7S2XXK2_9STRA1.500e-12980.37S-adenosylmethionine synthase n=1 Tax=Fibrocapsa j... [more]
W7TSQ4_9STRA8.430e-12682.19S-adenosylmethionine synthase n=2 Tax=Monodopsidac... [more]
M4BQ36_HYAAE8.510e-12281.11S-adenosylmethionine synthase n=2 Tax=Peronosporac... [more]
H3GA19_PHYRM1.020e-12179.45S-adenosylmethionine synthase n=27 Tax=Peronospora... [more]
F0YMD4_AURAN1.870e-12178.54S-adenosylmethionine synthase n=3 Tax=Pelagomonada... [more]
A0A7S0PYC0_9EUKA2.020e-12078.08S-adenosylmethionine synthase n=1 Tax=Coccolithus ... [more]
B9ZZX2_9STRA5.210e-12078.34S-adenosylmethionine synthase n=10 Tax=Bacillariop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102717contigH-elongata_contig102717:994..2090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score430.3
Seed ortholog evalue5.6e-118
Seed eggNOG ortholog2880.D7FN56
KEGG rclassRC00021,RC01211
KEGG koko:K00789
KEGG ReactionR00177,R04771
KEGG Pathwayko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230
KEGG ModuleM00034,M00035,M00368,M00609
GOsGO:0000096,GO:0000098,GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004478,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006556,GO:0006732,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009087,GO:0009108,GO:0009987,GO:0016043,GO:0016054,GO:0016363,GO:0016597,GO:0016740,GO:0016765,GO:0017076,GO:0017144,GO:0019752,GO:0022607,GO:0030554,GO:0031406,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0034399,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046500,GO:0046872,GO:0046983,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606
EggNOG free text desc.methionine adenosyltransferase activity
EggNOG OGsCOG0192@1,KOG1506@2759
EC2.5.1.6
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size660
Cds size660
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.2878273-CDS-H-elongata_contig102717:993..13321622929564.2878273-CDS-H-elongata_contig102717:993..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102717 994..1332 -
1691679072.2187448-CDS-H-elongata_contig102717:993..13321691679072.2187448-CDS-H-elongata_contig102717:993..1332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102717 994..1332 -
1622929564.3051486-CDS-H-elongata_contig102717:1769..20901622929564.3051486-CDS-H-elongata_contig102717:1769..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102717 1770..2090 -
1691679072.2316525-CDS-H-elongata_contig102717:1769..20901691679072.2316525-CDS-H-elongata_contig102717:1769..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102717 1770..2090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102717.233.1prot_H-elongata_contig102717.233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102717 994..2090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102717.233.1

>prot_H-elongata_contig102717.233.1 ID=prot_H-elongata_contig102717.233.1|Name=mRNA_H-elongata_contig102717.233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp
QVTVAYKKEDGRMVPQRVHTVVISTQHDDDVSNEKIRADLMEHVVKQVVP
AKYLDDDTIYHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAF
SGKDPTKVDRSAAYAARWVAKSLVTAGLCHRVLVQLSYAIGVPYPLSIHV
DSYGTAKMRSGKTDEEIVEIINNNFDLRPGCLVRDLQLRRPVYQKTAAYG
HFGRSDPDFTWETPKDLTI*
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mRNA from alignment at H-elongata_contig102717:994..2090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102717.233.1 ID=mRNA_H-elongata_contig102717.233.1|Name=mRNA_H-elongata_contig102717.233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1097bp|location=Sequence derived from alignment at H-elongata_contig102717:994..2090- (Himanthalia elongata Himel1 dioecious)
CAGGTAACCGTTGCCTACAAGAAGGAGGACGGGCGAATGGTGCCCCAGCG AGTTCACACGGTTGTGATCTCCACCCAGCACGACGACGATGTTTCGAACG AGAAGATCCGTGCCGACCTGATGGAGCATGTCGTGAAGCAAGTCGTTCCC GCCAAGTACTTGGACGACGATACCATCTACCACCTCAACCCCTCGGGCAG GTTCGTGATCGGCGGGCCTCACGGCGACGCCGGGCTGACGGGCCGTAAGA TCATCATCGACACTTACGGCGGCTGGGGTGCGCATGGCGGAGGTGCCTTC TCTGGCAAGGATCCCACAAAGGTGCTCGGATGGGCAGTGTAGCACTCCGC TTGTGCTTCGAAAACAGATCAACCACCGCGTTCTAATCGAACCTTTCTGG GGTGTGCCCGCCGGTAGTGACCCAGAAGCCCACAGACCCGCTGTTGACCG TCGGTAGTAACCCGCAAAAATAAATGAGTCAATTTCGGCTACCTCAGCCT CGGTCACGTAAAAACGCGATACTTTTGAGCGAATTTTTTTCATGTAAGGT GCGTCGGGAAGTGTTTTCAATCGTAGAACGTGTATTGTGCACACATGTAA TACCTTGACTTTACCATTCAGGGTGCAATAAAGGTGTGGATGTTCAGAGA GGTTTTGATGGAGTTGATATGTTTATTAGTACCAAAAGTAATGCTACCCG CTGATCTAGCATCCTCTATCCACGTTCTTTCATTTCCTCCAATCACGCCG ACTTCCAGGTGGACCGCTCCGCTGCGTACGCTGCGCGCTGGGTGGCCAAG TCCCTTGTCACAGCTGGTCTGTGCCACCGTGTCCTGGTTCAGCTTTCTTA CGCCATCGGTGTACCTTACCCGCTGTCAATCCACGTGGACAGCTACGGTA CGGCCAAGATGCGCTCCGGAAAGACTGATGAAGAGATTGTGGAGATCATC AACAATAACTTCGACCTGCGCCCCGGTTGTCTGGTTCGCGATCTGCAGTT GCGCCGGCCCGTGTACCAGAAGACCGCCGCCTACGGTCACTTCGGCAGGT CGGATCCCGACTTCACGTGGGAGACGCCGAAGGATCTCACCATCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102717:994..2090-

>mRNA_H-elongata_contig102717.233.1 ID=mRNA_H-elongata_contig102717.233.1|Name=mRNA_H-elongata_contig102717.233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig102717:994..2090- (Himanthalia elongata Himel1 dioecious)
CAGGTAACCGTTGCCTACAAGAAGGAGGACGGGCGAATGGTGCCCCAGCG
AGTTCACACGGTTGTGATCTCCACCCAGCACGACGACGATGTTTCGAACG
AGAAGATCCGTGCCGACCTGATGGAGCATGTCGTGAAGCAAGTCGTTCCC
GCCAAGTACTTGGACGACGATACCATCTACCACCTCAACCCCTCGGGCAG
GTTCGTGATCGGCGGGCCTCACGGCGACGCCGGGCTGACGGGCCGTAAGA
TCATCATCGACACTTACGGCGGCTGGGGTGCGCATGGCGGAGGTGCCTTC
TCTGGCAAGGATCCCACAAAGCAGGTAACCGTTGCCTACAAGAAGGAGGA
CGGGCGAATGGTGCCCCAGCGAGTTCACACGGTTGTGATCTCCACCCAGC
ACGACGACGATGTTTCGAACGAGAAGATCCGTGCCGACCTGATGGAGCAT
GTCGTGAAGCAAGTCGTTCCCGCCAAGTACTTGGACGACGATACCATCTA
CCACCTCAACCCCTCGGGCAGGTTCGTGATCGGCGGGCCTCACGGCGACG
CCGGGCTGACGGGCCGTAAGATCATCATCGACACTTACGGCGGCTGGGGT
GCGCATGGCGGAGGTGCCTTCTCTGGCAAGGATCCCACAAAGGTGGACCG
CTCCGCTGCGTACGCTGCGCGCTGGGTGGCCAAGTCCCTTGTCACAGCTG
GTCTGTGCCACCGTGTCCTGGTTCAGCTTTCTTACGCCATCGGTGTACCT
TACCCGCTGTCAATCCACGTGGACAGCTACGGTACGGCCAAGATGCGCTC
CGGAAAGACTGATGAAGAGATTGTGGAGATCATCAACAATAACTTCGACC
TGCGCCCCGGTTGTCTGGTTCGCGATCTGCAGTTGCGCCGGCCCGTGTAC
CAGAAGACCGCCGCCTACGGTCACTTCGGCAGGTCGGATCCCGACTTCAC
GTGGGAGACGCCGAAGGATCTCACCATCTAAGTGGACCGCTCCGCTGCGT
ACGCTGCGCGCTGGGTGGCCAAGTCCCTTGTCACAGCTGGTCTGTGCCAC
CGTGTCCTGGTTCAGCTTTCTTACGCCATCGGTGTACCTTACCCGCTGTC
AATCCACGTGGACAGCTACGGTACGGCCAAGATGCGCTCCGGAAAGACTG
ATGAAGAGATTGTGGAGATCATCAACAATAACTTCGACCTGCGCCCCGGT
TGTCTGGTTCGCGATCTGCAGTTGCGCCGGCCCGTGTACCAGAAGACCGC
CGCCTACGGTCACTTCGGCAGGTCGGATCCCGACTTCACGTGGGAGACGC
CGAAGGATCTCACCATCTAA
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