mRNA_H-elongata_contig102695.232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102695.232.1
Unique NamemRNA_H-elongata_contig102695.232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 4.560e-59
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +CFANIICLQTCNGR DEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPP E+QV +F+PKLMEGQWYISAGLNPAFD FDCQ
Sbjct:   80 KCFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIESQVKSFNPKLMEGQWYISAGLNPAFDTFDCQ 173          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: F0YAR5_AURAN (VDE domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAR5_AURAN)

HSP 1 Score: 155 bits (393), Expect = 1.110e-45
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN++C+ TC GRADE  CQIRCGDLFEN+ VG+FNACAVS+K CV QR DDG+WPVPP+E+ V AF+ ++ +G+WYISAGLNP FD FDCQ
Sbjct:   18 KCAANLVCINTCTGRADESECQIRCGDLFENDVVGEFNACAVSQKKCVPQRGDDGAWPVPPQESYVKAFNTQVFDGRWYISAGLNPVFDTFDCQ 111          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.900e-43
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN+ C+QTCNGR DE  CQIRCGD+FENE VG+FNACAVS+K CV QRQDDG++PVPP  A V +F+ K  EG+WYISAGLNP FD F CQ
Sbjct:   57 KCLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQDDGTFPVPPESALVRSFNTKQFEGRWYISAGLNPIFDTFPCQ 150          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A835ZCN5_9STRA (Violaxanthin de-epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.880e-42
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN+ C+QTC G+ADE  CQI+CGD FENE V KFNACAVS+K CV Q+QDD S+PVPP+EA V +FD  + +GQWYISAGLNP FD FDCQ
Sbjct:   72 KCIANLACIQTCAGKADETACQIKCGDYFENETVAKFNACAVSRKRCVPQKQDDNSYPVPPQEALVKSFDTSIFQGQWYISAGLNPIFDIFDCQ 165          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: K8Z7V3_NANGC (Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7V3_NANGC)

HSP 1 Score: 150 bits (379), Expect = 3.760e-41
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN+ICL TCN +ADE  CQI CGDLFENE VG+FNACA+SKK CV +++DDG++PVPP  A V++FD    +G+WYISAGLNP FDCFDCQ
Sbjct:  178 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQ 271          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A0M0JUT6_9EUKA (Violaxanthin de-epoxidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUT6_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 9.660e-40
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 1
Query:    4 CFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            C AN++C+QTC GRADEG CQIRCGD F N+ VG F  CAV+ K CV QR DDGSWPVP +EA V +F P ++ G WYISAG N AFD FDCQ
Sbjct:   75 CAANLLCIQTCTGRADEGDCQIRCGDAFSNDVVGDFTKCAVTDKKCVPQRADDGSWPVPSKEALVASFSPDMLTGPWYISAGYNKAFDTFDCQ 167          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A8J2WYQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYQ1_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.200e-39
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN++C+ +C GR DE  CQIRCGDLFENE VG FNACAVS+K CV QRQDDG++P P  EA V  FD ++  G+WYISAGLN AFD FDCQ
Sbjct:   83 KCAANLVCINSCTGRKDESECQIRCGDLFENEVVGDFNACAVSQKKCVPQRQDDGAYPEPSPEAIVKKFDTRVFNGRWYISAGLNDAFDTFDCQ 176          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.130e-38
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN+ICL TCN +ADE  CQI CGDLFENE VG+FNACA+SKK CV +++DDGS+PVP   A V +FD    +G+WYISAGLNP FD FDCQ
Sbjct:  132 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQ 225          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2DEM2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DEM2_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 7.000e-38
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    4 CFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            C AN++C+QTC  R DE  CQI+CGD F N  V  F  CAVS K CV QRQDDGSWPVP + A +  F P++M G WYISAGLN AFD FDCQ
Sbjct:   72 CAANLLCIQTCTNRPDEADCQIKCGDEFANNVVESFTKCAVSDKKCVPQRQDDGSWPVPQKSALIEKFSPEMMTGPWYISAGLNKAFDTFDCQ 164          
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.920e-36
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
            +C AN+IC+ TCNG+ADE  CQI+CGD+FEN+ VG+FN CAVS  +CV QRQDDGS+PVP     V+ FD K+  G+WYISAG N  FD F CQ
Sbjct:  144 KCLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQDDGSYPVPAPSQLVSKFDTKIFNGRWYISAGQNKLFDIFPCQ 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE4.560e-5991.49VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
F0YAR5_AURAN1.110e-4568.09VDE domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2SKA3_9STRA2.900e-4369.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZCN5_9STRA2.880e-4268.09Violaxanthin de-epoxidase chloroplast n=1 Tax=Trib... [more]
K8Z7V3_NANGC3.760e-4167.02Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae ... [more]
A0A0M0JUT6_9EUKA9.660e-4065.59Violaxanthin de-epoxidase n=1 Tax=Chrysochromulina... [more]
A0A8J2WYQ1_9STRA2.200e-3965.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1B1Q5V0_9STRA1.130e-3865.96Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis ... [more]
A0A7S2DEM2_9EUKA7.000e-3862.37Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2XNS0_9STRA1.920e-3661.70Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102695contigH-elongata_contig102695:239..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue4.9e-47
Seed eggNOG ortholog2880.D7FY70
Preferred nameVDE
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.violaxanthin de-epoxidase activity
EggNOG OGs28K1H@1,2QSFY@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.2282262-CDS-H-elongata_contig102695:238..3941622929564.2282262-CDS-H-elongata_contig102695:238..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102695 239..394 +
1691679072.191181-CDS-H-elongata_contig102695:238..3941691679072.191181-CDS-H-elongata_contig102695:238..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102695 239..394 +
1622929564.2424476-CDS-H-elongata_contig102695:1748..18741622929564.2424476-CDS-H-elongata_contig102695:1748..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102695 1749..1874 +
1691679072.203488-CDS-H-elongata_contig102695:1748..18741691679072.203488-CDS-H-elongata_contig102695:1748..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102695 1749..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102695.232.1prot_H-elongata_contig102695.232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102695 239..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102695.232.1

>prot_H-elongata_contig102695.232.1 ID=prot_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQ
RQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ
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mRNA from alignment at H-elongata_contig102695:239..1874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102695.232.1 ID=mRNA_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1636bp|location=Sequence derived from alignment at H-elongata_contig102695:239..1874+ (Himanthalia elongata Himel1 dioecious)
AGGTGCTTCGCGAACATTATCTGCCTGCAGACGTGCAACGGTCGGGCGGA CGAGGGCTACTGCCAGATACGGTGCGGAGACCTGTTCGAGAACGAGGCGG TCGGGAAGTTTAACGCGTGCGCTGTCTCCAAGAAAAACTGCGTCAAGCAG CGCCAGGTGTGAGACGCCTACGCCGCGTGTTGCAAGCCAAGCTGCTTCGT AGCTGTCGGGCGGGGACGGGGCGGGGCGGTGAAGAGGAGGAGCTACAACG AGCGCCTAGTATGTTTGCAGGGAGACAGCAGTAGCTGCACCCAGTGTACG ATAGGCGTGCCCATAATTTCCGGCTCTTGAGGGTAGGCAACAGGGGCTCT AGCCTGCGTGAGGGATACAGTAATTAGCACCCAATAACGCCTCTTTGTGG GGAGATCGCGGTCCTACTCCACGGACGCTTATCATTTTTTATTCGGGTGT ATGGTGCTCTATACATCATCATTATCATAATATATATATATCGCATATGT CCACTGTACCAATAGTAGGTGTGGGGGAAAAAGAGGCACACGATAATTGG TACATGGGGTTACCTGAAAAGGCTGTACCCGTTACTCAAGCTACCTTGAG GACTGCTGGCTCAATGTCGGTGGACTCTCGGTGGTAAACGCCATCGGTAC GCAATTGCGTGACCTGATGAAATCGGGATTGGCCCGATGGCGGTAGACGG TAGAGATGGACGCCGTCGCGGAAAGCGAGAGGACCCAGAGGATCCCAAGA GTACGCATCAGATTCAGCCTGGGTTGGGAAAATGAGCAGACTGGCGCGGG ACGGAACGGCCGAACCTGTCTCGCGAGACCACAATCTCAGTCGCGATCGG GGGCAGGGAAAAAATAAATTGTCCCTGTTCAGCTGACCACAAACAGAAGG CATACAAATGCGGATGATCCTTACTTTGCTATGTGTGATGACGTCATGAC CATATATAAAGCTCTATGTATACAACCGATCTCTGTTTTGTCGGCGTGTT CACACTCTTGTAGGCACAATTCTCACTGAAATGACTATTAATAATCAATC TGCCGTCGGGAAAGCGGCTCGATTCCGAGCCTCAATTTTCTGCTTTTTCC AATCGCTCGCGAAGCAACCCGCCCTGTCGTTGTCCACCGGAGGCGAGGAT ATTAGTAATCTCGGGCAGTGTCCCGCGACCCAGCGGTCCGCCGATTGGAG TCCGAACTCCGAGCCACATACACACACACGACAGGGGCGGATTGCGTGGT TTATGTGCAATCTAATAAATACACACACATACACACACACACACACTACT CGCTGTTTGTCCAATTTCCCCTCCATTTGCCAAGCCGCACGTCTAAAACG TGCCACGGCCTTGATTGAACCAGTTACTCTCTTGTTTGCTAAAACCGAGT TATTCTCACACAGCCCTGAACAGCAAAATACATTTCTTCCCTTTCCGGTC TCCTTCCCCCCCCCCTACCCCGCTTGGTCTGGCCATGCCTCATTTTATTT CGAAACCCAGGACGACGGGTCATGGCCCGTGCCCCCCCGGGAGGCACAGG TGACGGCCTTTGACCCTAAGCTCATGGAGGGACAGTGGTACATATCAGCT GGATTGAATCCGGCTTTCGACTGCTTCGACTGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig102695:239..1874+

>mRNA_H-elongata_contig102695.232.1 ID=mRNA_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig102695:239..1874+ (Himanthalia elongata Himel1 dioecious)
AGGTGCTTCGCGAACATTATCTGCCTGCAGACGTGCAACGGTCGGGCGGA
CGAGGGCTACTGCCAGATACGGTGCGGAGACCTGTTCGAGAACGAGGCGG
TCGGGAAGTTTAACGCGTGCGCTGTCTCCAAGAAAAACTGCGTCAAGCAG
CGCCAGAGGTGCTTCGCGAACATTATCTGCCTGCAGACGTGCAACGGTCG
GGCGGACGAGGGCTACTGCCAGATACGGTGCGGAGACCTGTTCGAGAACG
AGGCGGTCGGGAAGTTTAACGCGTGCGCTGTCTCCAAGAAAAACTGCGTC
AAGCAGCGCCAGGACGACGGGTCATGGCCCGTGCCCCCCCGGGAGGCACA
GGTGACGGCCTTTGACCCTAAGCTCATGGAGGGACAGTGGTACATATCAG
CTGGATTGAATCCGGCTTTCGACTGCTTCGACTGCCAGGACGACGGGTCA
TGGCCCGTGCCCCCCCGGGAGGCACAGGTGACGGCCTTTGACCCTAAGCT
CATGGAGGGACAGTGGTACATATCAGCTGGATTGAATCCGGCTTTCGACT
GCTTCGACTGCCAG
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