mRNA_H-elongata_contig102695.232.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE) HSP 1 Score: 194 bits (494), Expect = 4.560e-59 Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+CFANIICLQTCNGR DEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPP E+QV +F+PKLMEGQWYISAGLNPAFD FDCQ
Sbjct: 80 KCFANIICLQTCNGRPDEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPIESQVKSFNPKLMEGQWYISAGLNPAFDTFDCQ 173
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: F0YAR5_AURAN (VDE domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAR5_AURAN) HSP 1 Score: 155 bits (393), Expect = 1.110e-45 Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN++C+ TC GRADE CQIRCGDLFEN+ VG+FNACAVS+K CV QR DDG+WPVPP+E+ V AF+ ++ +G+WYISAGLNP FD FDCQ
Sbjct: 18 KCAANLVCINTCTGRADESECQIRCGDLFENDVVGEFNACAVSQKKCVPQRGDDGAWPVPPQESYVKAFNTQVFDGRWYISAGLNPVFDTFDCQ 111
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2SKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKA3_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.900e-43 Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN+ C+QTCNGR DE CQIRCGD+FENE VG+FNACAVS+K CV QRQDDG++PVPP A V +F+ K EG+WYISAGLNP FD F CQ
Sbjct: 57 KCLANLACIQTCNGRPDESACQIRCGDIFENEVVGEFNACAVSQKRCVPQRQDDGTFPVPPESALVRSFNTKQFEGRWYISAGLNPIFDTFPCQ 150
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A835ZCN5_9STRA (Violaxanthin de-epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN5_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.880e-42 Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN+ C+QTC G+ADE CQI+CGD FENE V KFNACAVS+K CV Q+QDD S+PVPP+EA V +FD + +GQWYISAGLNP FD FDCQ
Sbjct: 72 KCIANLACIQTCAGKADETACQIKCGDYFENETVAKFNACAVSRKRCVPQKQDDNSYPVPPQEALVKSFDTSIFQGQWYISAGLNPIFDIFDCQ 165
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: K8Z7V3_NANGC (Violaxanthin de-epoxidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7V3_NANGC) HSP 1 Score: 150 bits (379), Expect = 3.760e-41 Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN+ICL TCN +ADE CQI CGDLFENE VG+FNACA+SKK CV +++DDG++PVPP A V++FD +G+WYISAGLNP FDCFDCQ
Sbjct: 178 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQ 271
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A0M0JUT6_9EUKA (Violaxanthin de-epoxidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUT6_9EUKA) HSP 1 Score: 144 bits (363), Expect = 9.660e-40 Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 1 Query: 4 CFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
C AN++C+QTC GRADEG CQIRCGD F N+ VG F CAV+ K CV QR DDGSWPVP +EA V +F P ++ G WYISAG N AFD FDCQ
Sbjct: 75 CAANLLCIQTCTGRADEGDCQIRCGDAFSNDVVGDFTKCAVTDKKCVPQRADDGSWPVPSKEALVASFSPDMLTGPWYISAGYNKAFDTFDCQ 167
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A8J2WYQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYQ1_9STRA) HSP 1 Score: 144 bits (362), Expect = 2.200e-39 Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN++C+ +C GR DE CQIRCGDLFENE VG FNACAVS+K CV QRQDDG++P P EA V FD ++ G+WYISAGLN AFD FDCQ
Sbjct: 83 KCAANLVCINSCTGRKDESECQIRCGDLFENEVVGDFNACAVSQKKCVPQRQDDGAYPEPSPEAIVKKFDTRVFNGRWYISAGLNDAFDTFDCQ 176
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A1B1Q5V0_9STRA (Violaxanthin de-epoxidase n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1B1Q5V0_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.130e-38 Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN+ICL TCN +ADE CQI CGDLFENE VG+FNACA+SKK CV +++DDGS+PVP A V +FD +G+WYISAGLNP FD FDCQ
Sbjct: 132 KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQ 225
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2DEM2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DEM2_9EUKA) HSP 1 Score: 135 bits (341), Expect = 7.000e-38 Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1 Query: 4 CFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
C AN++C+QTC R DE CQI+CGD F N V F CAVS K CV QRQDDGSWPVP + A + F P++M G WYISAGLN AFD FDCQ
Sbjct: 72 CAANLLCIQTCTNRPDEADCQIKCGDEFANNVVESFTKCAVSDKKCVPQRQDDGSWPVPQKSALIEKFSPEMMTGPWYISAGLNKAFDTFDCQ 164
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Match: A0A7S2XNS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS0_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.920e-36 Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1 Query: 1 RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQRQDDGSWPVPPREAQVTAFDPKLMEGQWYISAGLNPAFDCFDCQ 282
+C AN+IC+ TCNG+ADE CQI+CGD+FEN+ VG+FN CAVS +CV QRQDDGS+PVP V+ FD K+ G+WYISAG N FD F CQ
Sbjct: 144 KCLANVICINTCNGKADEMGCQIKCGDIFENDVVGEFNKCAVSDMDCVPQRQDDGSYPVPAPSQLVSKFDTKIFNGRWYISAGQNKLFDIFPCQ 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102695.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102695.232.1 >prot_H-elongata_contig102695.232.1 ID=prot_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp RCFANIICLQTCNGRADEGYCQIRCGDLFENEAVGKFNACAVSKKNCVKQback to top mRNA from alignment at H-elongata_contig102695:239..1874+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102695.232.1 ID=mRNA_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1636bp|location=Sequence derived from alignment at H-elongata_contig102695:239..1874+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102695:239..1874+ >mRNA_H-elongata_contig102695.232.1 ID=mRNA_H-elongata_contig102695.232.1|Name=mRNA_H-elongata_contig102695.232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig102695:239..1874+ (Himanthalia elongata Himel1 dioecious)back to top |