mRNA_H-elongata_contig102672.230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102672.230.1
Unique NamemRNA_H-elongata_contig102672.230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102672.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102672contigH-elongata_contig102672:1816..2221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size406
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102672.230.1prot_H-elongata_contig102672.230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102672 1829..2167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.0359132-UTR-H-elongata_contig102672:1815..18281622929564.0359132-UTR-H-elongata_contig102672:1815..1828Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102672 1816..1828 +
1691679072.1036067-UTR-H-elongata_contig102672:1815..18281691679072.1036067-UTR-H-elongata_contig102672:1815..1828Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102672 1816..1828 +
1622929564.0845942-UTR-H-elongata_contig102672:2167..22211622929564.0845942-UTR-H-elongata_contig102672:2167..2221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102672 2168..2221 +
1691679072.1264505-UTR-H-elongata_contig102672:2167..22211691679072.1264505-UTR-H-elongata_contig102672:2167..2221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102672 2168..2221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.063593-CDS-H-elongata_contig102672:1828..21671622929564.063593-CDS-H-elongata_contig102672:1828..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102672 1829..2167 +
1691679072.114453-CDS-H-elongata_contig102672:1828..21671691679072.114453-CDS-H-elongata_contig102672:1828..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102672 1829..2167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102672.230.1

>prot_H-elongata_contig102672.230.1 ID=prot_H-elongata_contig102672.230.1|Name=mRNA_H-elongata_contig102672.230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MSSYRVVSRTNLLRRGGGPFCCSGVKEQRWGRGHLQQHLSSLLEGVSLTL
SRTSLVPQESNAQTKYYTPHRKAYKYRTPDALTFCFWGAIVFLKNGVSLD
EVHQYMLPCVPS*
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mRNA from alignment at H-elongata_contig102672:1816..2221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102672.230.1 ID=mRNA_H-elongata_contig102672.230.1|Name=mRNA_H-elongata_contig102672.230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=406bp|location=Sequence derived from alignment at H-elongata_contig102672:1816..2221+ (Himanthalia elongata Himel1 dioecious)
TGGGAAGATTGCGATGTCATCGTATCGCGTTGTATCGCGCACCAACCTGT
TGAGGAGGGGGGGGGGTCCCTTCTGCTGCTCTGGCGTGAAGGAGCAAAGA
TGGGGGCGGGGTCATCTACAGCAGCACCTTTCCTCCCTCTTGGAAGGCGT
GTCTCTGACTTTAAGCCGAACCTCGTTGGTCCCTCAAGAGTCAAATGCTC
AAACGAAATATTACACACCACATCGTAAAGCCTACAAATATAGAACTCCC
GACGCCCTCACTTTTTGTTTTTGGGGGGCAATAGTATTTTTAAAGAACGG
AGTGTCATTAGACGAAGTGCACCAATATATGCTACCATGCGTACCTTCAT
AGGTGTGTATTGTACCCTTTACCTTATACCGTACCTGTTCCATGCTTTCC
TCCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig102672:1816..2221+

>mRNA_H-elongata_contig102672.230.1 ID=mRNA_H-elongata_contig102672.230.1|Name=mRNA_H-elongata_contig102672.230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig102672:1816..2221+ (Himanthalia elongata Himel1 dioecious)
ATGTCATCGTATCGCGTTGTATCGCGCACCAACCTGTTGAGGAGGGGGGG
GGGTCCCTTCTGCTGCTCTGGCGTGAAGGAGCAAAGATGGGGGCGGGGTC
ATCTACAGCAGCACCTTTCCTCCCTCTTGGAAGGCGTGTCTCTGACTTTA
AGCCGAACCTCGTTGGTCCCTCAAGAGTCAAATGCTCAAACGAAATATTA
CACACCACATCGTAAAGCCTACAAATATAGAACTCCCGACGCCCTCACTT
TTTGTTTTTGGGGGGCAATAGTATTTTTAAAGAACGGAGTGTCATTAGAC
GAAGTGCACCAATATATGCTACCATGCGTACCTTCATAGATGTCATCGTA
TCGCGTTGTATCGCGCACCAACCTGTTGAGGAGGGGGGGGGGTCCCTTCT
GCTGCTCTGGCGTGAAGGAGCAAAGATGGGGGCGGGGTCATCTACAGCAG
CACCTTTCCTCCCTCTTGGAAGGCGTGTCTCTGACTTTAAGCCGAACCTC
GTTGGTCCCTCAAGAGTCAAATGCTCAAACGAAATATTACACACCACATC
GTAAAGCCTACAAATATAGAACTCCCGACGCCCTCACTTTTTGTTTTTGG
GGGGCAATAGTATTTTTAAAGAACGGAGTGTCATTAGACGAAGTGCACCA
ATATATGCTACCATGCGTACCTTCATAG
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