Homology
BLAST of mRNA_H-elongata_contig102554.222.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 7.590e-6 Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 2 Query: 134 VWAYGNGLMHPDLYFTGRELAFCVKATVQLAWKDRRQADKGEVTFRA 274
+WAY NGL+H D T L F + + QLAW +RR+AD+ EVTFRA
Sbjct: 153 LWAYHNGLVHADFCLTRGNLVF-FEGSCQLAWDERRRADRVEVTFRA 198
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 277 |
| Cds size | 207 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929563.085745-UTR-H-elongata_contig102554:141..209 | 1622929563.085745-UTR-H-elongata_contig102554:141..209 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102554 142..209 - |
| 1691679071.6419625-UTR-H-elongata_contig102554:141..209 | 1691679071.6419625-UTR-H-elongata_contig102554:141..209 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102554 142..209 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929563.1041608-CDS-H-elongata_contig102554:209..281 | 1622929563.1041608-CDS-H-elongata_contig102554:209..281 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102554 210..281 - |
| 1691679071.6512852-CDS-H-elongata_contig102554:209..281 | 1691679071.6512852-CDS-H-elongata_contig102554:209..281 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102554 210..281 - |
| 1622929563.1199276-CDS-H-elongata_contig102554:297..432 | 1622929563.1199276-CDS-H-elongata_contig102554:297..432 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102554 298..432 - |
| 1691679071.6607375-CDS-H-elongata_contig102554:297..432 | 1691679071.6607375-CDS-H-elongata_contig102554:297..432 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102554 298..432 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102554.222.1 >prot_H-elongata_contig102554.222.1 ID=prot_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GGSTQKVYGNSLTWEILVQGGRGAPAGGTSGQLRGWASRCLITCCLGVWK
WANASRFIFHGKGTSVLC* back to topmRNA from alignment at H-elongata_contig102554:142..432- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig102554.222.1 ID=mRNA_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig102554:142..432- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGCACACAGAAGGTGTACGGAAACTCCTTAACATGGGAGATACT
GGTGCAAGGTGGAAGAGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTAC
GTGGTTGGGCCTCGCGCTGTCTTATCACCTGCTGTGCAGGGCGTCAGAAA
GTTGGGCGTATGGAAATGGGCTAATGCATCCCGATTTATATTTCACGGGA
AGGGAACTAGCGTTTTGTGTTAAGGCAACAGTACAACTAGCTTGGAAGGA
TAGGCGGCAGGCCGACAAGGGGGAAGTAACGTTTCGAGCGG back to topCoding sequence (CDS) from alignment at H-elongata_contig102554:142..432- >mRNA_H-elongata_contig102554.222.1 ID=mRNA_H-elongata_contig102554.222.1|Name=mRNA_H-elongata_contig102554.222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig102554:142..432- (Himanthalia elongata Himel1 dioecious)
GGAGGCAGCACACAGAAGGTGTACGGAAACTCCTTAACATGGGAGATACT
GGTGCAAGGTGGAAGAGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTAC
GTGGTTGGGCCTCGCGCTGTCTTATCACCTGCTGTGGAGGCAGCACACAG
AAGGTGTACGGAAACTCCTTAACATGGGAGATACTGGTGCAAGGTGGAAG
AGGTGCGCCGGCCGGGGGCACGAGTGGGCAGTTACGTGGTTGGGCCTCGC
GCTGTCTTATCACCTGCTGTTTGGGCGTATGGAAATGGGCTAATGCATCC
CGATTTATATTTCACGGGAAGGGAACTAGCGTTTTGTGTTAATTGGGCGT
ATGGAAATGGGCTAATGCATCCCGATTTATATTTCACGGGAAGGGAACTA
GCGTTTTGTGTTAA back to top
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