mRNA_H-elongata_contig10252.221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: D7FVR1_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR1_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.930e-84
Identity = 143/195 (73.33%), Postives = 164/195 (84.10%), Query Frame = 1

Query:    1 TDGPRVLCTEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSKIS 585
            TDGPRV C EFDPDTTVIKAS Q  Y+ DQ T EN V+MF D+R+AVD VDP RDT+AYS +F + SQYLY+WQ+  WV+GGG + V VI+ VLQGSL ISLLMA +I+MVVLQVFGFL LL+VG+NGF+IVNLCVMVGLVVEFTAHIGRGFLF  G +RD+RV + LT+LLWPTFAGACTTF AVLPL FSKIS
Sbjct:  811 TDGPRVDCAEFDPDTTVIKASQQLLYVHDQTTRENNVKMFRDMREAVDSVDPDRDTFAYSDTFALQSQYLYSWQMLFWVVGGGAVMVAVIIAVLQGSLTISLLMAGTIIMVVLQVFGFLTLLDVGLNGFTIVNLCVMVGLVVEFTAHIGRGFLFTAGDNRDDRVAQTLTELLWPTFAGACTTFFAVLPLTFSKIS 1005

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A9V563_MONBE (Patched-like protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V563_MONBE)

HSP 1 Score: 99.4 bits (246), Expect = 1.160e-20
Identity = 71/207 (34.30%), Postives = 111/207 (53.62%), Query Frame = 1

Query:    4 DGPRVLC-----TEFDPD--TTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGV--------DPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            DG    C     TE DPD  T  + ++   FYL +  + +N +    D RD VD V        DP  +T+     ++   QYL +++    V+G  +  +    FVLQ SL+ SLL+  +I++V ++V GFLPLL + +N FS  N+ + +G+ +EFT+HI   FL   G +R +R+  AL  +  P   GA ++ LAVL +A S+
Sbjct: 1222 DGVHTSCFDIVGTESDPDFPTITLYSTRGTFYLQNLDSTDNFLDAIEDTRDRVDEVLDEYDDSSDPEFETFVIGYPYIYWEQYLTSFEDLFTVVGLSLAGIFAATFVLQCSLVTSLLLCLTILVVGIEVLGFLPLLNLEVNAFSSTNVILSLGMSIEFTSHIAHEFLVEQGEERTDRIVRALRFMGQPMLHGAVSSILAVLFIAGSQ 1428

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A7S0L2J5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2J5_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 3.200e-17
Identity = 62/193 (32.12%), Postives = 108/193 (55.96%), Query Frame = 1

Query:   16 VLCTEFDPDTTV-IKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYT----WQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            V+CT+++    V + A+  + Y  +    ++ + +  D R  VD +DP  ++Y Y   +    QY+      ++I GW + G  +  ++  F    S I S+L+   I+ V+++V+GF+ +L + +N FS+VNL + VGL VEFTAH+   FL A G   D R+  A+ +++ P   G  ++FLAV+ L F+K
Sbjct:  650 VVCTKYEATNDVKLDAAASSIYTKNLLDDDDFIAVIKDGRKRVDAIDPN-NSYMYGYVYQYWDQYVNIETNLYKIVGWALLGCFLATLIFQF----SPITSILVTLVILKVIIEVYGFIYVLGIKLNAFSLVNLTMSVGLAVEFTAHVSHVFLMAKGTKND-RMASAVMEMMAPMANGFASSFLAVVALGFAK 836

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: F2UAQ0_SALR5 (SSD domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UAQ0_SALR5)

HSP 1 Score: 79.3 bits (194), Expect = 9.960e-14
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 1

Query:  133 DAVDGVD-PTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            DA D  D P   ++  S   +   QYL++++    V+G  ++ + V  F+ Q S I SLL+   I +V L+V+  LP L + +N FS  NLC+ +G+ VEFTAH+   FL   G  R +RV+  L  +  P F GA ++ +AVL +  S+
Sbjct: 1352 DAYDNEDDPDYRSFVISYVHIFWEQYLHSYRDLYVVVGLCLLGIFVATFLFQFSFITSLLLCIVIFIVDLEVYALLPALGLTLNAFSTTNLCLAIGMAVEFTAHVAHQFLTEAGESRPQRVRATLRFMGTPLFNGAMSSLIAVLFIVGSR 1501

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.330e-13
Identity = 53/181 (29.28%), Postives = 94/181 (51.93%), Query Frame = 1

Query:   40 DTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHG-VDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            D  +IK S  + YL++    EN V    D R+  D        +AYS  FV + Q++  +       G  ++ V+ +   + G + I LL+  ++V++ +++ GF+    + +N  +++ L + VGLVV++  HI   FL     + +D R+ EAL ++      GA TTFL ++PLAF+ 
Sbjct:  683 DEGLIKISRSDMYLVNLVDTENNVDALRDTREVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVTIVLLVCLTLVVIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPRIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFAN 863

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: F2TWB0_SALR5 (SSD domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWB0_SALR5)

HSP 1 Score: 77.4 bits (189), Expect = 4.590e-13
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 1

Query:  145 GVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFS 576
            G D   +TYA      I  QYL++ +    ++G  V+ V +   VLQ + + S+++   ++M V++V+G LP+ +V  N FS+VNLC+ VG+ +EFTAHI   FL   G  R  RV+ AL  +    F GA ++ L  L +A S
Sbjct: 1335 GNDTKYNTYATGYVHFIWEQYLHSEENLYLIVGLCVVGVFIATLVLQFNPLASVILCVIVLMAVIEVYGLLPIWDVRNNAFSLVNLCLSVGMGIEFTAHITHQFLAERGESRVLRVRNALGFMGTAMFHGAVSSILTTLFIAGS 1478

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A1C7NGI0_9FUNG (Niemann-Pick type C-related protein 1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NGI0_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 3.820e-12
Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = 1

Query:  163 DTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAG-ACTTFLAVLPLAFSK 579
            + Y YS  +V   QY Y   +   ++G  ++++  +   L GSL   L++ + +VM+++ V G + L  V +NG S+VNL + VG+ VEF  HI RGF+ A G  R++R  +++ D+    F G   T F  ++ LAF++
Sbjct: 1065 EVYPYSVFYVFFEQYRYIAALAFEILGLAIVSIFAVTSCLLGSLQCGLIVMSVVVMILVDVVGAMTLWGVSLNGVSLVNLVICVGISVEFCCHIARGFMVASGT-REDRAGKSMVDVGSSVFCGITLTKFAGIIVLAFTR 1203

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.110e-11
Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = 1

Query:   49 VIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAH-GVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            V + S    YL++    +NKV    D R+  D        +AYS  F+   QYL  +       G  ++ V+V+   + G +II +           ++ GF+    + MNG + + L + VGLVV++  HI   FL     + +D R+ EAL ++     AGA TTFL ++PLAF+ 
Sbjct:  319 VSQISRSEMYLINLVDTDNKVDTLEDKREVADQSTLDPQAFAYSDMFLFAEQYLAIYNELLSSFGLALLAVLVLSLFVLGKVIIDV-----------ELLGFVYHWNLDMNGITAIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMAGAATTFLGIMPLAFAN 485

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: UPI000D1C8382 (protein patched homolog 2-like isoform X1 n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C8382)

HSP 1 Score: 71.6 bits (174), Expect = 4.320e-11
Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1

Query:   25 TEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPT---RDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
            T F P+  V       F        E  +RM    R   D ++        Y Y   F+   QYL++ +    V+G  ++ V V + + Q S++IS L+   ++MV L+V+GF+ ++   +N  S+VNL +++G+  E T ++ R FL   G  R+ RV +AL   L P   G  T  +A LPL F K
Sbjct:  873 TTFKPNLRVAATKTSIFIEHLGAETEPNLRMIRQTRKIADQMNAEIGENVAYVYGYPFLFFEQYLHSSRNLYIVVGFALLGVFVAVLIFQFSIVISFLIVIVLLMVDLEVYGFIYVIGAKLNSLSLVNLGIVIGMAAELT-YLARAFLMVEGT-RNYRVGKALEWTLEPLLHGFGTQVVATLPLVFLK 1058

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BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A225AUQ3_9EURO (SSD domain-containing protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225AUQ3_9EURO)

HSP 1 Score: 70.9 bits (172), Expect = 8.070e-11
Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 1

Query:  163 DTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFA--HGVDR-------DERVKEALTDLLWPTFAGACTT-FLAVLPLAFSK 579
            D + YSK ++   QY    ++ G ++G  +  + V+  +L GSL    ++AT++VM+V+ + G + +  V +N  S+VNL + VG+ VEF AHI R F+F   + +DR       D R   AL ++    F+G   T  L V  LAF++
Sbjct: 1051 DIFPYSKFYIFFDQYASIVRLTGTLLGAAIGIIFVVSSILLGSLATGAVIATTVVMIVVDIIGTMAVAGVSLNAVSLVNLVICVGIGVEFCAHIARAFMFPSRNMLDRSPKLRGKDARAWTALVNVGGSVFSGITVTKLLGVCVLAFTR 1199

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D7FVR1_ECTSI	1.930e-84	73.33	SSD domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A9V563_MONBE	1.160e-20	34.30	Patched-like protein n=1 Tax=Monosiga brevicollis ...	[more]
A0A7S0L2J5_9EUKA	3.200e-17	32.12	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
F2UAQ0_SALR5	9.960e-14	36.00	SSD domain-containing protein n=1 Tax=Salpingoeca ...	[more]
D7FY89_ECTSI	2.330e-13	29.28	Novel protein n=1 Tax=Ectocarpus siliculosus TaxID...	[more]
F2TWB0_SALR5	4.590e-13	36.81	SSD domain-containing protein n=1 Tax=Salpingoeca ...	[more]
A0A1C7NGI0_9FUNG	3.820e-12	33.57	Niemann-Pick type C-related protein 1 n=1 Tax=Choa...	[more]
A0A6H5JGQ4_9PHAE	1.110e-11	30.34	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
UPI000D1C8382	4.320e-11	30.85	protein patched homolog 2-like isoform X1 n=5 Tax=...	[more]
A0A225AUQ3_9EURO	8.070e-11	33.56	SSD domain-containing protein n=1 Tax=Talaromyces ...	[more]

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Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	279.6
Seed ortholog evalue	1.1e-72
Seed eggNOG ortholog	2880.D7FVR1
KEGG ko	ko:K11101,ko:K12385
KEGG TC	2.A.6.6
KEGG Pathway	ko04142,ko04340,ko04979,ko05200,ko05217,map04142,map04340,map04979,map05200,map05217
EggNOG free text desc.	cellular response to sterol depletion
EggNOG OGs	KOG1933@1,KOG1933@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000
Hectar predicted targeting category	other localisation
Exons	5
Model size	591
Cds size	591
Stop	1
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10252:74..6074-
coding sequence from alignment at H-elongata_contig10252:74..6074-

protein sequence of mRNA_H-elongata_contig10252.221.1

>prot_H-elongata_contig10252.221.1 ID=prot_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
TDGPRVLCTEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGV
DPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLII
SLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGR
GFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSKISL*

mRNA from alignment at H-elongata_contig10252:74..6074-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10252.221.1 ID=mRNA_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6001bp|location=Sequence derived from alignment at H-elongata_contig10252:74..6074- (Himanthalia elongata Himel1 dioecious)
ACAGACGGGCCCCGCGTGCTCTGTACGGAGTTCGACCCCGATACCACCGT
AATCAAGGCCAGCCTGCAGAACTTTTACCTCCTCGACCAGGTACGATGTT
TTGACCGCCTGATGTTCCCATCCCCGCCGTCCCTCCTTTCCTTCCCTCGT
CCTACGAAATGCCGATTCTCAACAAAGACTCTTTGCGTACTATAAATAAA
TACAATCCTTGAACTAGGCCCACGGAAGATGCGCCTATGTTTACCATTTT
GTCCGTTTGTACCAATAGCATATACTCCTCGAGCCAGCCAAGCCTACGGG
GTTGTATGCTTGCTTTTGAATTGAATTTTTGAATTGAATTCTCACATAAG
CTGATGTCAAAATCCAGCCCGTGGTGCTTTTATATCTAAACTATTTCGGT
GTTAAGTACTAAAACAAGCCTTGAGTCGAGTCTACAAGGTTGTGGGCGCG
CTCTTTCCTGTTGATTCCTTGTATCGCATATTGTCCACTGTACCAATAAT
GGATGTAGGAAAAGAGAGGCGCACAATAATTGGTCCACGGGGTTACCTGA
ATAGGCTGCACCCGTTACTCAAGCTGCCTTAAGGACTGCTGACCCAGTGC
CAGCGGACTCTCGATAGTGAACGACGTCCGAATTCCGTGACCTGATGAAG
TCGGGATTATATCGATGGCAGTAGACGGTAGATATAGACGTCGTCACGGA
AAACGAGAGGGTCGAGAGGATCCCGGGACAGAACGAAACAGCCGTACCCA
TCTCGCAAAACCAAATTATCAGGCGCGAACGGGGACAAGAGAAAATTCAT
TTTTCCCTGTTCAGCTGACCATTTCTATGCTACTATATATGTGATGACGT
CATGATGACACCCTAGTAGAAGTATTGAGTCAAATGTACGGGAATATTTG
CCTTATTTTTACAGACTATACCGACTCTTGTAAACTAGCTTGTAGATAAT
CCTAGAGTCGGGTCTAATGGGGATATGGGCGTGTTTTTTACCACGGCGTC
GACTCTTTTGAATCTTGAACAAGATAAAATCCTTGAATGACGTCGACGGG
AATCTCTGTACACACGCAGATCCCCTTCCCCTTAAGGGCCGGAATCAACG
ATACCGCTAACACCCTTTCGTACCCTAGCAAATTTCAGCAAAATTTGTTG
TTAGCCAGTAGCTATTTATATAGGGAAACAATTTTTGATCTTCTTTAACA
AAATATAAAGTTAACAAACATATAAATAAAGTCATTGCTAACCCGAAAAA
AAAAATCCGAAAAAAAAAATTCGAAAAAAAAGTGGCCAAAAACACGCCCA
ACTATTTGGCGTCGCCCGGGGGGACTCTGATTTCTCCCAAAACGTTTTCG
TGGGCTTTTGTTGCCTTTGCACCTTCAAAACAAAGTAAAATGTTGTGTAG
TTAGCACGTTCTTCCCAGGGGGGTGCTATCGTTCGAGCATGCACGGAGGG
CCTTAACCAGAAAATGTCGAGGCAAGGCCTCATGGCGCATGCCTTTCCTT
GTCCCCCATGATCTACGGAGGAAGACACACCCGTATGTTTGTGGTCATCA
CATAGTGTTCTAGAACATGATGCACACATCGGAACGTGTGTAAATGAAAG
GGTCGATATGGCTTTTCAATTCCGCAGAACACGTGGAAGAATTTAGATGC
TCGAATCGCGAGATAATTGTTGACTCCTGAGGCTTGCCTTTCCAGGAAGA
GAAAAAGGGGCGACGTTCGTTCCGCGTCCCAACGTTCACCCGATCCACTA
CGGAGATACTTCTGACTTTCCCCCCGTCGCCGTCACCCTTGAAACGGTCC
GCGGAACGGTCCCTGCTGCGCATGCTCACAGGGTACGGTGGAAAATAAAG
TTCGGATGTTCAATGACCTGCGGGACGCGGTGGACGGCGTCGATCCGACC
CGCGACACGTACGCCTACAGCAAGAGGTAAGTGGAACTCCCTCTCCTCCT
TTCAACCCCGGCACGCGTGAATATCCTTCCGAGACTCGGCCGGTGTGTAT
TTTGTCTATAACTATATATCAATGGTTAAAGGAGAAATCTCCAATTCCTC
CGGGATGGGAAGAGGGGGGACGTTCTCTCCTTTCTCTATACAAGCTATTT
TGTATGCCGCCGGGGGCGTTTCTAGCTTTGCGCCCCACCCCGAACCCCAC
CTGCCCAGCCCTCCCACCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCC
CTGCCCAGCCTTCCCCCCCCCCCCCCCCCTACCCGCGCGGTATAGTAGTT
TTGTAGAGTTTTGAATTTAAGGGCCAATAGAAACGTGGAGTCGGGTTTGG
GGAGGGGTAGTTTTCAATCCGCGATTTTATTTGCAACGGGTTTTTGTCTG
CCACGTCAGCGCATTTCCGCCTCTTGCACACCGCGCGTGCTCACCCCCGC
CCCCCGCCCCCTCCGTCCCCCCTCCCCTCCCTGTCGTCGCACAGTTTTAT
ATAAATGAGTTTAGGGGGTTTAAATTCCCTGGTAGGTATTATCTCTGAGA
TTTACATGCGATCTTTTTTTTCTCCCTCTGGAAAGCATTTCCACCGCGGC
GCATCGTACATTTTCCCCTTCTCCCCTCTACACTCTCTAGGGCATGGGGG
AGATCATGCGTTGTGTCCAATAAGCTCAGAGATGTTGATGTAAGGGCCTT
GTCTCTGTCCGAAGGGATGAACACACATCACGTGCTAAAGGATGCCGCCT
GCTGAACAATGGGTTGTTGGAAAGCCCTAGAGCGACCTTAGACTTACGAT
AGTATTCCGCCAGGAATATTCATGTGCAGGTTACGGTCTAAATATATTGA
CATATATATATATATATATACCGTTGAGTATATATGTAGTGTGTGTGTGT
GTGTGTGTGGCGCTTATGCGTCCGTGTGGAGATCAAAGCCCCTTTGTGGT
ATATTTGAGAGTTTAGTCGATAACGGTAACGGTAACTGGAATGGTAAAGG
TAACGGTAACGGTAACGTCCGCTGAATGGGTAACATTTGTTTACCGGGTG
TGTCCAATTAACCCGGCATGATGACTAAAAGCTGGTATCATCATCCTTGT
GAAACGTGGCCTGGCCGGCGAAAACTCGGTATCACATCGCTCCCTCCCGG
ACGTTAGCATTGTGGGGATGGGTGGCCTACTATGTCCGTTTAACATAATT
ACACCTCCCCCCCCCCCTCCACAATCCTCTCTCGAACAATCGTCTTCCTT
GTGTTGGGACTTTCAGCTTCGTGATCAACTCCCAGTATCTGTACACTTGG
CAAATCTTCGGCTGGGTCATTGGCGGAGGCGTTATCACGGTGGTGGTGAT
CATGTTCGTCCTTCAGGGCAGCCTGATCATCAGTCTCCTCATGGCCACGT
CCATCGTGATGGTCGTGCTCCAGGTGAATTATTTTCTACTTAAGCTTTTG
TTTGGTCTGTTTAATTTTTAGGATGAGGGAGGGAGAGGTCCTTTTGTTCT
TGCTTCTTCGGGGCAAGGTGTTCTCTCTCAGCTTCGGTTGATTCTCCTGT
CTCGACTCGAACCCTACCACACCATTATATGATGCGTACGAACTCGTGTG
GAATGCTTCAATCTCTTTCTTGCGAAACGACGAATCGTCGCGGGCTGGCT
ATCCATATGGTGGGGTGTGTCGTTCCATACAAGATATTAGTTGTCATGTA
TAACAGAAAACGTTTTTTCAAGAGAAGTCGAAATAAGTAGCATTCCTGGG
ACGGGGAAGGTCCGTTATGGCCCCACGATGGAAAGATGCCGAGTACTATG
CATGCCTTATACGTCTCTGATGCTGTCTGTGACTGTATCGTGCAATAGTG
GGTGTGGGAAAAGAGAGGCGCACAATAATTGCGCCATTGGGTTACCTGAA
TAGGCTACACCCGTTACCCAAGCTACCTTGAGAACTGCTGACTCAGTGTC
GGCGGACTCTCGGTGGTAAACGCCATCGGTACGTAATCGCGTGACCTGAT
AAAATCGCGATTAGCCCCAGTGGTGGTTTGACAGTAGAGATGGGCGCCGT
TGCGGAAAACGAGAAGATCCCGGGAGTACGCAACAGATTCAGCCTGGGCT
GAGAGAATAAGCAGGCTGACGCGGGACGGGACGGCCGAATCCGCCTCGCG
AGACCAAATACTCAGGCGCGAACGGGGACAGGGAAAGTTATTTTTTCCCT
GTTCAGCTCACCACGAGCAGGATTGGAAACCGTATCCAGTTAATCAATAA
TCTGCCATGTGTGATGATGTATGATGACCACTCAGAGTAGGAGGGCGGAA
AGCCCATTTGTGTACCCGAAACGCAAATCACCCAACCCTATCTCCCGCGC
ACGCCCGCCTCCCTGAACCAGGACATAGGGGAGTCCATTCAGTGTGCTGT
ATGAGCTCAGAATACCTCGGTCGATTGATGCCTTACGATCAATGGATTGT
TGGAAAGCCCTAGAGCAATAAAAACTTGTGAAAGTACTCCGCCAGGAGTA
CTTACAATAGCATATTCAAGCCTGAGGTGTGCATGTGGCGCTTATGCGTT
CGTGCGGAGATTACAGTCCCCTCTGCGGTATACCTTGAGCGTATAATCGC
GCCCGCTGAACGTGAAACGATTTGGTTACCCGATGAGCCCAATCAACCAA
TGTCATTTCCGGTTTGGAGTATCAAACGCAAGGATGATGACTTACATCTA
GCCGCGTCGAAACCCCGGCATATCGCTACGCACCGGCATTAGCTTTGTTG
GGATGCGTGTTATATACTGTGTTCGTTAGGATAGATCATGCGTTTAACAT
AAGTACCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCTCCTTGAACATATT
CTGTGCTCGACGGCGCATCACGCAGGTATTCGGATTTCTGCCCCTGCTCG
AGGTTGGCATGAACGGCTTCAGCATCGTGAACCTGTGCGTCATGGTGAGA
GAAAATAAGAGACGAGGCCCTGTGTCACTCCGCGCTTTGCGCTGTCGATT
TTTCTCCCGGCGGATACCGTAGCCGGGACGGCCCCTATGAAGGGTCTGTG
GTGAGATGAGAAATATACGGAAGGAAGCCGGGTTTCGAACCGCCTATTTC
CCAAAAAGGGTCTGGAGGGGCCTCAATGCCTCTGGCGTTGGGCGGTCGGA
CAAACACATCAACCCTTCTTCTCTCCAGTTTTATTTTATTTATTTTTCTA
GCACCGAGCGAGATATCTCGAATGTTCTAATGCCGCGTAGCTTGACCCAG
TTGAATTCATCAATCGAGGGAGAGTTTGGGGGGGGGGTGAACACGTCTGC
CCCCCCCCTTGTGGGCAGTCGGGGAATGTTTTTTCTTTTATGTTTATTAA
GGCAGTTGGTTTCATGGCATTCGGGTTTTGGACGCGCGGGATCGGATGTA
GTACTGCAGCGGTGTGGGGCATTATCGAACGAAGCATCAGAATCTCTCGA
GAGCCATCCGGAAATAGAGCTCCCCCATCTCTTCTTGGTGTTTCGTGTAA
AGAAGAGAGGGAAGGGACTTAACCGTTCGCCGCCGTCCGGGGGAAAAATA
ATTTGAAAACGCGCATGTAAAATATAAAATATTGATGAAAAGCGCTCGCG
GGAAAAAATATGAAGCGCATTGAACACACACACCAATACGAGTAGCCTAA
AATGATTAGCATGACAGGGCCGGATGGGGCGGTTATGTGCAATTTCATAT
ATATATATACACACACATTGCGCGGTTGTGGATGTTCGGAGAGTTGAAAT
GAGTTCAAGGTTATTTTAATAAAAATACACACACACTAACAGCACACCAC
ACAAAAACACAGACAGACACACAAACACACTAAAATACATGCTTGCGTCC
TTCTGTTCCCGGTGTGCGCAGGTGGGCCTCGTCGTGGAGTTTACGGCGCA
CATCGGGCGGGGCTTCCTCTTCGCCCACGGGGTCGATCGAGACGAGCGCG
TGAAGGAGGCCCTCACGGACCTCCTCTGGCCCACCTTCGCCGGAGCGTGT
ACCACGTTTCTGGCTGTGCTGCCTTTGGCCTTCTCGAAGATCTCTTTGTA
A

Coding sequence (CDS) from alignment at H-elongata_contig10252:74..6074-

>mRNA_H-elongata_contig10252.221.1 ID=mRNA_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig10252:74..6074- (Himanthalia elongata Himel1 dioecious)
ACAGACGGGCCCCGCGTGCTCTGTACGGAGTTCGACCCCGATACCACCGT
AATCAAGGCCAGCCTGCAGAACTTTTACCTCCTCGACCAGACAGACGGGC
CCCGCGTGCTCTGTACGGAGTTCGACCCCGATACCACCGTAATCAAGGCC
AGCCTGCAGAACTTTTACCTCCTCGACCAGGGTACGGTGGAAAATAAAGT
TCGGATGTTCAATGACCTGCGGGACGCGGTGGACGGCGTCGATCCGACCC
GCGACACGTACGCCTACAGCAAGAGGGTACGGTGGAAAATAAAGTTCGGA
TGTTCAATGACCTGCGGGACGCGGTGGACGGCGTCGATCCGACCCGCGAC
ACGTACGCCTACAGCAAGAGCTTCGTGATCAACTCCCAGTATCTGTACAC
TTGGCAAATCTTCGGCTGGGTCATTGGCGGAGGCGTTATCACGGTGGTGG
TGATCATGTTCGTCCTTCAGGGCAGCCTGATCATCAGTCTCCTCATGGCC
ACGTCCATCGTGATGGTCGTGCTCCAGCTTCGTGATCAACTCCCAGTATC
TGTACACTTGGCAAATCTTCGGCTGGGTCATTGGCGGAGGCGTTATCACG
GTGGTGGTGATCATGTTCGTCCTTCAGGGCAGCCTGATCATCAGTCTCCT
CATGGCCACGTCCATCGTGATGGTCGTGCTCCAGGTATTCGGATTTCTGC
CCCTGCTCGAGGTTGGCATGAACGGCTTCAGCATCGTGAACCTGTGCGTC
ATGGTATTCGGATTTCTGCCCCTGCTCGAGGTTGGCATGAACGGCTTCAG
CATCGTGAACCTGTGCGTCATGGTGGGCCTCGTCGTGGAGTTTACGGCGC
ACATCGGGCGGGGCTTCCTCTTCGCCCACGGGGTCGATCGAGACGAGCGC
GTGAAGGAGGCCCTCACGGACCTCCTCTGGCCCACCTTCGCCGGAGCGTG
TACCACGTTTCTGGCTGTGCTGCCTTTGGCCTTCTCGAAGATCTCTTTGT
AAGTGGGCCTCGTCGTGGAGTTTACGGCGCACATCGGGCGGGGCTTCCTC
TTCGCCCACGGGGTCGATCGAGACGAGCGCGTGAAGGAGGCCCTCACGGA
CCTCCTCTGGCCCACCTTCGCCGGAGCGTGTACCACGTTTCTGGCTGTGC
TGCCTTTGGCCTTCTCGAAGATCTCTTTGTAA