mRNA_H-elongata_contig10252.221.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: D7FVR1_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR1_ECTSI) HSP 1 Score: 279 bits (713), Expect = 1.930e-84 Identity = 143/195 (73.33%), Postives = 164/195 (84.10%), Query Frame = 1 Query: 1 TDGPRVLCTEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSKIS 585
TDGPRV C EFDPDTTVIKAS Q Y+ DQ T EN V+MF D+R+AVD VDP RDT+AYS +F + SQYLY+WQ+ WV+GGG + V VI+ VLQGSL ISLLMA +I+MVVLQVFGFL LL+VG+NGF+IVNLCVMVGLVVEFTAHIGRGFLF G +RD+RV + LT+LLWPTFAGACTTF AVLPL FSKIS
Sbjct: 811 TDGPRVDCAEFDPDTTVIKASQQLLYVHDQTTRENNVKMFRDMREAVDSVDPDRDTFAYSDTFALQSQYLYSWQMLFWVVGGGAVMVAVIIAVLQGSLTISLLMAGTIIMVVLQVFGFLTLLDVGLNGFTIVNLCVMVGLVVEFTAHIGRGFLFTAGDNRDDRVAQTLTELLWPTFAGACTTFFAVLPLTFSKIS 1005
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A9V563_MONBE (Patched-like protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V563_MONBE) HSP 1 Score: 99.4 bits (246), Expect = 1.160e-20 Identity = 71/207 (34.30%), Postives = 111/207 (53.62%), Query Frame = 1 Query: 4 DGPRVLC-----TEFDPD--TTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGV--------DPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
DG C TE DPD T + ++ FYL + + +N + D RD VD V DP +T+ ++ QYL +++ V+G + + FVLQ SL+ SLL+ +I++V ++V GFLPLL + +N FS N+ + +G+ +EFT+HI FL G +R +R+ AL + P GA ++ LAVL +A S+
Sbjct: 1222 DGVHTSCFDIVGTESDPDFPTITLYSTRGTFYLQNLDSTDNFLDAIEDTRDRVDEVLDEYDDSSDPEFETFVIGYPYIYWEQYLTSFEDLFTVVGLSLAGIFAATFVLQCSLVTSLLLCLTILVVGIEVLGFLPLLNLEVNAFSSTNVILSLGMSIEFTSHIAHEFLVEQGEERTDRIVRALRFMGQPMLHGAVSSILAVLFIAGSQ 1428
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A7S0L2J5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2J5_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 3.200e-17 Identity = 62/193 (32.12%), Postives = 108/193 (55.96%), Query Frame = 1 Query: 16 VLCTEFDPDTTV-IKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYT----WQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
V+CT+++ V + A+ + Y + ++ + + D R VD +DP ++Y Y + QY+ ++I GW + G + ++ F S I S+L+ I+ V+++V+GF+ +L + +N FS+VNL + VGL VEFTAH+ FL A G D R+ A+ +++ P G ++FLAV+ L F+K
Sbjct: 650 VVCTKYEATNDVKLDAAASSIYTKNLLDDDDFIAVIKDGRKRVDAIDPN-NSYMYGYVYQYWDQYVNIETNLYKIVGWALLGCFLATLIFQF----SPITSILVTLVILKVIIEVYGFIYVLGIKLNAFSLVNLTMSVGLAVEFTAHVSHVFLMAKGTKND-RMASAVMEMMAPMANGFASSFLAVVALGFAK 836
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: F2UAQ0_SALR5 (SSD domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UAQ0_SALR5) HSP 1 Score: 79.3 bits (194), Expect = 9.960e-14 Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 133 DAVDGVD-PTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
DA D D P ++ S + QYL++++ V+G ++ + V F+ Q S I SLL+ I +V L+V+ LP L + +N FS NLC+ +G+ VEFTAH+ FL G R +RV+ L + P F GA ++ +AVL + S+
Sbjct: 1352 DAYDNEDDPDYRSFVISYVHIFWEQYLHSYRDLYVVVGLCLLGIFVATFLFQFSFITSLLLCIVIFIVDLEVYALLPALGLTLNAFSTTNLCLAIGMAVEFTAHVAHQFLTEAGESRPQRVRATLRFMGTPLFNGAMSSLIAVLFIVGSR 1501
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 2.330e-13 Identity = 53/181 (29.28%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 40 DTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHG-VDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
D +IK S + YL++ EN V D R+ D +AYS FV + Q++ + G ++ V+ + + G + I LL+ ++V++ +++ GF+ + +N +++ L + VGLVV++ HI FL + +D R+ EAL ++ GA TTFL ++PLAF+
Sbjct: 683 DEGLIKISRSDMYLVNLVDTENNVDALRDTREVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVTIVLLVCLTLVVIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPRIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFAN 863
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: F2TWB0_SALR5 (SSD domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TWB0_SALR5) HSP 1 Score: 77.4 bits (189), Expect = 4.590e-13 Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 145 GVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFS 576
G D +TYA I QYL++ + ++G V+ V + VLQ + + S+++ ++M V++V+G LP+ +V N FS+VNLC+ VG+ +EFTAHI FL G R RV+ AL + F GA ++ L L +A S
Sbjct: 1335 GNDTKYNTYATGYVHFIWEQYLHSEENLYLIVGLCVVGVFIATLVLQFNPLASVILCVIVLMAVIEVYGLLPIWDVRNNAFSLVNLCLSVGMGIEFTAHITHQFLAERGESRVLRVRNALGFMGTAMFHGAVSSILTTLFIAGS 1478
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A1C7NGI0_9FUNG (Niemann-Pick type C-related protein 1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NGI0_9FUNG) HSP 1 Score: 74.7 bits (182), Expect = 3.820e-12 Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 163 DTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAG-ACTTFLAVLPLAFSK 579
+ Y YS +V QY Y + ++G ++++ + L GSL L++ + +VM+++ V G + L V +NG S+VNL + VG+ VEF HI RGF+ A G R++R +++ D+ F G T F ++ LAF++
Sbjct: 1065 EVYPYSVFYVFFEQYRYIAALAFEILGLAIVSIFAVTSCLLGSLQCGLIVMSVVVMILVDVVGAMTLWGVSLNGVSLVNLVICVGISVEFCCHIARGFMVASGT-REDRAGKSMVDVGSSVFCGITLTKFAGIIVLAFTR 1203
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.110e-11 Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 49 VIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPTRDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAH-GVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
V + S YL++ +NKV D R+ D +AYS F+ QYL + G ++ V+V+ + G +II + ++ GF+ + MNG + + L + VGLVV++ HI FL + +D R+ EAL ++ AGA TTFL ++PLAF+
Sbjct: 319 VSQISRSEMYLINLVDTDNKVDTLEDKREVADQSTLDPQAFAYSDMFLFAEQYLAIYNELLSSFGLALLAVLVLSLFVLGKVIIDV-----------ELLGFVYHWNLDMNGITAIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMAGAATTFLGIMPLAFAN 485
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: UPI000D1C8382 (protein patched homolog 2-like isoform X1 n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C8382) HSP 1 Score: 71.6 bits (174), Expect = 4.320e-11 Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1 Query: 25 TEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVDPT---RDTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFAHGVDRDERVKEALTDLLWPTFAGACTTFLAVLPLAFSK 579
T F P+ V F E +RM R D ++ Y Y F+ QYL++ + V+G ++ V V + + Q S++IS L+ ++MV L+V+GF+ ++ +N S+VNL +++G+ E T ++ R FL G R+ RV +AL L P G T +A LPL F K
Sbjct: 873 TTFKPNLRVAATKTSIFIEHLGAETEPNLRMIRQTRKIADQMNAEIGENVAYVYGYPFLFFEQYLHSSRNLYIVVGFALLGVFVAVLIFQFSIVISFLIVIVLLMVDLEVYGFIYVIGAKLNSLSLVNLGIVIGMAAELT-YLARAFLMVEGT-RNYRVGKALEWTLEPLLHGFGTQVVATLPLVFLK 1058
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Match: A0A225AUQ3_9EURO (SSD domain-containing protein n=1 Tax=Talaromyces atroroseus TaxID=1441469 RepID=A0A225AUQ3_9EURO) HSP 1 Score: 70.9 bits (172), Expect = 8.070e-11 Identity = 50/149 (33.56%), Postives = 82/149 (55.03%), Query Frame = 1 Query: 163 DTYAYSKSFVINSQYLYTWQIFGWVIGGGVITVVVIMFVLQGSLIISLLMATSIVMVVLQVFGFLPLLEVGMNGFSIVNLCVMVGLVVEFTAHIGRGFLFA--HGVDR-------DERVKEALTDLLWPTFAGACTT-FLAVLPLAFSK 579
D + YSK ++ QY ++ G ++G + + V+ +L GSL ++AT++VM+V+ + G + + V +N S+VNL + VG+ VEF AHI R F+F + +DR D R AL ++ F+G T L V LAF++
Sbjct: 1051 DIFPYSKFYIFFDQYASIVRLTGTLLGAAIGIIFVVSSILLGSLATGAVIATTVVMIVVDIIGTMAVAGVSLNAVSLVNLVICVGIGVEFCAHIARAFMFPSRNMLDRSPKLRGKDARAWTALVNVGGSVFSGITVTKLLGVCVLAFTR 1199 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10252.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10252.221.1 >prot_H-elongata_contig10252.221.1 ID=prot_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp TDGPRVLCTEFDPDTTVIKASLQNFYLLDQGTVENKVRMFNDLRDAVDGVback to top mRNA from alignment at H-elongata_contig10252:74..6074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10252.221.1 ID=mRNA_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6001bp|location=Sequence derived from alignment at H-elongata_contig10252:74..6074- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10252:74..6074- >mRNA_H-elongata_contig10252.221.1 ID=mRNA_H-elongata_contig10252.221.1|Name=mRNA_H-elongata_contig10252.221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig10252:74..6074- (Himanthalia elongata Himel1 dioecious)back to top |