mRNA_H-elongata_contig102509.219.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI) HSP 1 Score: 122 bits (307), Expect = 8.840e-31 Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 2 Query: 2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241 G P+A EPTEC K+G++FDF+DA DL+AL+PGMSWWYNWSPAII EVK AQ +S EYIPMIWGEKD+ + RL+NL Sbjct: 117 GDPSPVATEPTECHGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANL 196
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.280e-20 Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241 GSSEP+ + PT+CS+K+G+AF F+++ DL L G+SWWY+WSP + + A +T + Y+PMIWGE D+T RL +L Sbjct: 86 GSSEPVELVPTQCSSKRGVAFGFKESGDLYTLKTGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDL 165
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A6H5KQ88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.080e-19 Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241 G SEP+ + PT+CS+K+G+AF F+++ DL L G+SWWY+WSP + + A +T + Y+PMIWGE D+T RL +L Sbjct: 49 GHSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDL 128
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: UPI0013DD757D (glycosyl hydrolase n=1 Tax=Pyxidicoccus caerfyrddinensis TaxID=2709663 RepID=UPI0013DD757D) HSP 1 Score: 65.9 bits (159), Expect = 6.850e-11 Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 2 Query: 2 GSSEPMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAI---IPLEVKAAQITSDTEYIPMIWG 205 G S EPT S K+G+AFD ADL A+SPG+SWWYNWSP +P + +A ++IPM+W Sbjct: 37 GVSRDAGTEPTAKSAKRGIAFDLATPADLAAVSPGVSWWYNWSPRPHRDVPTDYRARY---GMDFIPMLWN 104
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A554GSE9_9DELT (Glyco_hydro_cc domain-containing protein n=2 Tax=Corallococcus TaxID=83461 RepID=A0A554GSE9_9DELT) HSP 1 Score: 65.5 bits (158), Expect = 8.060e-11 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 41 SNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITS-DTEYIPMIWG 205 S+K+G+A+ + AADL+ALSPGMSWWYNWSP P + A+ +S + ++PM WG Sbjct: 23 SSKRGIAYGYHSAADLKALSPGMSWWYNWSPR--PEDGAASVYSSQNVSFVPMAWG 76
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A017T4U7_9DELT (Putative secreted protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017T4U7_9DELT) HSP 1 Score: 65.5 bits (158), Expect = 1.110e-10 Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 2 Query: 14 PMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241 P + PT C K+G+A+ + AD++ALSPG+SWWYNW+ A T +Y+PM+WG + AR + + Sbjct: 77 PPSSHPTGC--KRGVAYGYHSTADMQALSPGVSWWYNWTHVPDEGVRPDAYETLGVDYVPMVWGGDGLDGARAAQI 150
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A3A8HWT0_9DELT (Glyco_hydro_cc domain-containing protein n=4 Tax=Myxococcaceae TaxID=31 RepID=A0A3A8HWT0_9DELT) HSP 1 Score: 65.1 bits (157), Expect = 1.260e-10 Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 2 Query: 41 SNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDT-EYIPMIWG 205 S K+GLA+ + AADL+ALSPGMSWWYNWSP P + A+ S+ ++PM WG Sbjct: 42 SAKRGLAYGYHSAADLKALSPGMSWWYNWSPR--PEDGAASVYASEAVSFVPMAWG 95
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A4Q5XY15_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XY15_9DELT) HSP 1 Score: 64.7 bits (156), Expect = 1.650e-10 Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 26 EPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDT-EYIPMIWG 205 +P S K+G+A+ + A DL+ALSPGMSWWYNWSP P A+ TS++ ++PM WG Sbjct: 28 DPATKSAKRGIAYGYHSADDLKALSPGMSWWYNWSPR--PEAGAASVYTSESVSFVPMAWG 86
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: A0A0K1E7A5_CHOCO (Glyco_hydro_cc domain-containing protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E7A5_CHOCO) HSP 1 Score: 63.9 bits (154), Expect = 3.730e-10 Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 2 Query: 14 PMAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWGEKDMTTARLSNL 241 P + +PT C K+G+A+ + AD+ ALSP +SWWYNW+ A T EY+PM+WG + AR + + Sbjct: 59 PPSSQPTGC--KRGVAYGYHSQADMLALSPAVSWWYNWTHVPDEGVRPDAYTTIGVEYVPMVWGGGGLDAARATQI 132
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Match: H8H0W5_DEIGI (F5/8 type C domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=H8H0W5_DEIGI) HSP 1 Score: 63.9 bits (154), Expect = 4.450e-10 Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 2 Query: 17 MAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQITSDTEYIPMIWG 205 + + T S K+GLA+D A DL AL+PG+SWWYNWSPA + A T +++PM+W Sbjct: 35 LTAQATAKSAKRGLAYDLATAPDLAALAPGVSWWYNWSPAPNGGAPQNAASTYGMDFVPMVWN 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102509.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102509.219.1 >prot_H-elongata_contig102509.219.1 ID=prot_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MAMEPTECSNKKGLAFDFQDAADLEALSPGMSWWYNWSPAIIPLEVKAAQback to top mRNA from alignment at H-elongata_contig102509:189..842+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102509.219.1 ID=mRNA_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig102509:189..842+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102509:189..842+ >mRNA_H-elongata_contig102509.219.1 ID=mRNA_H-elongata_contig102509.219.1|Name=mRNA_H-elongata_contig102509.219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig102509:189..842+ (Himanthalia elongata Himel1 dioecious)back to top |