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Homology
BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 6.790e-15 Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 1 VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKGGGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA 249
VGEIARAAA+FEVDEIVVYDDLSVSRKG GGVRDDS + D+NNPNVFMARLLQ A
Sbjct: 264 VGEIARAAAVFEVDEIVVYDDLSVSRKGQGGVRDDSASVAXXXXXXX--------XXXXXXXXXXXXDKNNPNVFMARLLQYA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LCJ2_ECTSI | 6.790e-15 | 57.83 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 79.7 |
| Seed ortholog evalue | 7e-13 |
| Seed eggNOG ortholog | 2880.D8LCJ2 |
| Preferred name | C9orf114 |
| KEGG ko | ko:K09142 |
| GOs | GO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016741,GO:0019222,GO:0022402,GO:0031047,GO:0031050,GO:0031616,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903047 |
| EggNOG free text desc. | SPOUT domain containing methyltransferase 1 |
| EggNOG OGs | COG2106@1,KOG3925@2759 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 249 |
| Cds size | 249 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929562.5718756-CDS-H-elongata_contig102462:1516..1765 | 1622929562.5718756-CDS-H-elongata_contig102462:1516..1765 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102462 1517..1765 - |
| 1691679071.4633472-CDS-H-elongata_contig102462:1516..1765 | 1691679071.4633472-CDS-H-elongata_contig102462:1516..1765 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102462 1517..1765 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102462.216.1 >prot_H-elongata_contig102462.216.1 ID=prot_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKG
GGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA back to topmRNA from alignment at H-elongata_contig102462:1517..1765- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig102462.216.1 ID=mRNA_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig102462:1517..1765- (Himanthalia elongata Himel1 dioecious)
GTGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGT
TGTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGG
ATGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGA
GGAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCA
TGATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCA back to topCoding sequence (CDS) from alignment at H-elongata_contig102462:1517..1765- >mRNA_H-elongata_contig102462.216.1 ID=mRNA_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig102462:1517..1765- (Himanthalia elongata Himel1 dioecious)
GTGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGT
TGTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGG
ATGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGA
GGAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCA
TGATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCAG
TGGGTGAGATAGCGCGAGCGGCGGCGATCTTCGAGGTGGACGAGATCGTT
GTCTACGACGACTTGTCCGTCTCGAGGAAGGGCAATGGGGGAGTGCGGGA
TGATTCTTGCACCAACGGTAGCAGCCTCACCGGGATCGCCGGGAAAGGAG
GAGGGGAAGGGGGAGGCATGTTTACTGCGGGGAGAGGGAGCGGGCACCAT
GATCGAAACAATCCTAATGTGTTCATGGCGCGGCTGCTGCAGGTAGCA back to top
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