Homology
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match:
D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)
HSP 1 Score: 75.5 bits (184), Expect = 6.490e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
NQHQ+SLWNGA ASGR P+A+P N K CVDCGSCLHGC
Sbjct: 544 NQHQSSLWNGAAASGRVPRAVPTNTKDCVDCGSCLHGC 581
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match:
A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)
HSP 1 Score: 75.1 bits (183), Expect = 8.890e-15
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
NQHQ+SLWNGA ASGR P+A+P N K CVDCGSCLHGC
Sbjct: 636 NQHQSSLWNGAAASGRVPRAVPTNTKECVDCGSCLHGC 673
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match:
A0A482V3E7_9ARCH (GMC_OxRdtase_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3E7_9ARCH)
HSP 1 Score: 58.9 bits (141), Expect = 3.030e-10
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1
Query: 1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
N++ LW GAV SG TP+ IPRN KGCVDCG C GC
Sbjct: 14 NENNRFLWQGAVKSGYTPEKIPRNVKGCVDCGHCCFGC 51
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match:
A0A7S1UJN9_9STRA (Long-chain-alcohol oxidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJN9_9STRA)
HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1
Query: 19 LWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
L GA A G +A+PRN KGCVDCGSC HGC
Sbjct: 443 LVEGAHALGMPCRAVPRNVKGCVDCGSCSHGC 474
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Match:
A0A7R9YDU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU7_9STRA)
HSP 1 Score: 47.0 bits (110), Expect = 7.290e-5
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 1
Query: 1 NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC 114
N++ L GA + G +A+PRN KGCVDCGSC GC
Sbjct: 346 NKNNDFLVEGAYSLGMKCRAVPRNVKGCVDCGSCNFGC 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102372.207.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 6.49e-15 / Id = 78.95 Expect = 8.89e-15 / Id = 78.95 Expect = 3.03e-10 / Id = 63.16 Expect = 1.11e-5 / Id = 65.63 Expect = 7.29e-5 / Id = 52.63 Sequence D7G5T1_ECTSI A0A6H5JQQ5_9PHAE A0A482V3E7_9ARCH A0A7S1UJN9_9STRA A0A7R9YDU7_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 75.5 Seed ortholog evalue 6e-12 Seed eggNOG ortholog 2880.D7G5T1 KEGG ko ko:K17756 GOs GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114 EggNOG free text desc. long-chain-alcohol oxidase activity EggNOG OGs 2QSD8@2759,COG2303@1 EC 1.1.3.20 COG Functional cat. E Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko01000 Hectar predicted targeting category no signal peptide or anchor Exons 1 Model size 114 Cds size 114 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929561.705739-CDS-H-elongata_contig102372:281..395 1622929561.705739-CDS-H-elongata_contig102372:281..395 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102372 282..395 - 1691679071.0720568-CDS-H-elongata_contig102372:281..395 1691679071.0720568-CDS-H-elongata_contig102372:281..395 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102372 282..395 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102372.207.1
>prot_H-elongata_contig102372.207.1 ID=prot_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
NQHQTSLWNGAVASGRTPKAIPRNAKGCVDCGSCLHGC back to top mRNA from alignment at H-elongata_contig102372:282..395-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102372.207.1 ID=mRNA_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig102372:282..395- (Himanthalia elongata Himel1 dioecious)AACCAGCACCAAACCAGCTTGTGGAACGGTGCCGTGGCGTCCGGTCGGAC
CCCGAAGGCGATTCCGAGGAACGCCAAGGGTTGCGTAGACTGCGGCAGCT
GTCTGCACGGCTGC back to top Coding sequence (CDS) from alignment at H-elongata_contig102372:282..395-
>mRNA_H-elongata_contig102372.207.1 ID=mRNA_H-elongata_contig102372.207.1|Name=mRNA_H-elongata_contig102372.207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig102372:282..395- (Himanthalia elongata Himel1 dioecious) back to top