mRNA_H-elongata_contig102354.205.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI) HSP 1 Score: 199 bits (506), Expect = 4.340e-57 Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 RSFNLFRLESAYEIR DLVDAIRR+NPR+DP +GG TRFEGWARMATPISGVSITEVKKPNLGEKVPAEVL EV+LNLAHFDR H+REEWD+ REHDVVFL+SIQSP Sbjct: 1030 RSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVTLNLAHFDRMHMREEWDTLREHDVVFLVSIQSP 1136
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A7S3GMN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMN5_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.630e-28 Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 R+F LFRLESAYEIR DL DAI+R P+ G F GWARMA PI VS+ EV KP LGE VP V V+++++ + +R+EW+SFREHDVVFL++IQ+P Sbjct: 574 RNFTLFRLESAYEIRDDLTDAIKRMGPKA--GLRGAVNFGGWARMAVPIVSVSVDEVTKPKLGELVPRNVDCTVTIDISRYS-GDMRQEWESFREHDVVFLVAIQAP 677
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A7S0QJN2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QJN2_9CRYP) HSP 1 Score: 115 bits (289), Expect = 5.530e-28 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQS 318 R+FNLFRLES YEIR D+ DA R PR + GKT GWAR P+SG +TE+ KPNLGE PA V+GE S +L+ +R EW+ FREHD++FL+SI++ Sbjct: 64 RNFNLFRLESTYEIRQDVEDAALRLRPRLS-LETGKTVLTGWARSCLPLSGFRVTEISKPNLGETRPAYVVGEASYSLSGLRDVKLRTEWEEFREHDILFLLSIKA 168
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A6V7L1M4_9HYME (Aquarius_N domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7L1M4_9HYME) HSP 1 Score: 108 bits (270), Expect = 3.330e-27 Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 4 SFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 +FNLFRLES YEIR D+ D++ R +P K A+ G F GWARMA PI+ ++ EV KPN+GEK P+ V +V++NL+ R ++ EW++ R+HDV FL++++ P Sbjct: 1 NFNLFRLESTYEIRQDIEDSVSRLSPWK--AEDGGVYFGGWARMAQPITQFAVVEVAKPNIGEKRPSRVRADVTINLSV--RREIKSEWENLRKHDVCFLLTVKPP 102
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A1Y1WSV3_9FUNG (Aquarius_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WSV3_9FUNG) HSP 1 Score: 114 bits (284), Expect = 3.390e-27 Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQS 318 R+FNLFRLESAYEIR D+ DA++R P+ + T F GWARMA PI SI +V+KPNLGEK PA+V +V+ N++ + + +R+EW S R+HD++FL+++Q+ Sbjct: 399 RNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER-TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAADVTFNISRYTPS-IRDEWSSLRQHDILFLLTLQA 502
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A7S3Z5T7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z5T7_9EUKA) HSP 1 Score: 114 bits (284), Expect = 3.640e-27 Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQS 318 R+FNLFRLES YEIR D+ + + R PR A G T F GWA+MA PI +IT+VKKPN+GE PA+V E++++LA F ++ VR++W++ REHDV+FL+ +++ Sbjct: 119 RNFNLFRLESTYEIREDIKNVVHRLKPRI--AGNGDTVFTGWAKMAVPIKTFTITKVKKPNIGEIKPAQVAAEITVDLAPF-QSRVRQDWEAIREHDVLFLLCVEA 221
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A1Y1YIH7_9FUNG (Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIH7_9FUNG) HSP 1 Score: 114 bits (284), Expect = 3.640e-27 Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQS 318 R+FNLFRLESAYEIR D+ DA++R P+ + T F GWARMA PI SI +V+KPNLGEK PA+V +V+ N++ + + +R+EW S R+HD++FL+++Q+ Sbjct: 375 RNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER-TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAADVTFNISRYTPS-IRDEWSSLRQHDILFLLTLQA 478
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: W7TJX7_9STRA (Intron-binding protein aquarius n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX7_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.950e-27 Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPIS--------GVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 RS+ LFR+ESAYEIR+DL+ +R P + G F GWARM P+ GV ITEV KPNLGE+VPA V E++++L REEWD REHDVVFL+ I++P Sbjct: 161 RSYTLFRVESAYEIRADLMTTLRYLQPVRQEGPEGGVAFRGWARMGVPLRKGGKDGGRGVVITEVLKPNLGERVPAGVKAEITVDLREXXXXXXREEWDLLREHDVVFLVRIENP 275
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: UPI0006C980D9 (intron-binding protein aquarius n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C980D9) HSP 1 Score: 113 bits (283), Expect = 4.990e-27 Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 R+FNLFRLES YEIR D+ D++ R +P K A+ G F GWARMA PI+ ++ EV KPN+GEK P+ V +VS+NL+ R ++ EW++ R+HDV FLI+++ P Sbjct: 446 RNFNLFRLESTYEIRQDIEDSVSRLSPWK--AEDGSAYFGGWARMAQPITQFAVVEVAKPNIGEKQPSRVRADVSINLSV--RKEIKSEWENLRKHDVCFLITVRPP 548
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Match: A0A4D9CVZ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVZ4_9STRA) HSP 1 Score: 113 bits (282), Expect = 6.860e-27 Identity = 56/115 (48.70%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPIS--------GVSITEVKKPNLGEKVPAEVLGEVSLNLAHFDRAHVREEWDSFREHDVVFLISIQSP 321 RS+ LFR+ESAYEIR+DL+ +R P + G F GWARM P+ GV ITEV KPNLGE++PA V E++++L REEWD REHDVVFL+ I++P Sbjct: 760 RSYTLFRVESAYEIRADLMTTLRYLQPVRQEGPEGGVAFRGWARMGVPLRKGGKDGGRGVVITEVLKPNLGERIPAGVKAEITVDLREXXXXXXREEWDLLREHDVVFLVRIENP 874 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102354.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102354.205.1 >prot_H-elongata_contig102354.205.1 ID=prot_H-elongata_contig102354.205.1|Name=mRNA_H-elongata_contig102354.205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp RSFNLFRLESAYEIRSDLVDAIRRSNPRKDPAQGGKTRFEGWARMATPISback to top mRNA from alignment at H-elongata_contig102354:424..1251+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102354.205.1 ID=mRNA_H-elongata_contig102354.205.1|Name=mRNA_H-elongata_contig102354.205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig102354:424..1251+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102354:424..1251+ >mRNA_H-elongata_contig102354.205.1 ID=mRNA_H-elongata_contig102354.205.1|Name=mRNA_H-elongata_contig102354.205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig102354:424..1251+ (Himanthalia elongata Himel1 dioecious)back to top |