mRNA_H-elongata_contig102188.197.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI) HSP 1 Score: 162 bits (411), Expect = 2.690e-43 Identity = 79/148 (53.38%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 602 VLKKQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPKNEDDYKNARRKLLREMQKLA-MQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 V++K+A SS +R++FLVGLEGTGHHYM+ VL ++C+ KV CP LC +A+V+YP L+ PK+ + Y +AR++L EM+KLA + L G++++ SFG+C GMMSYPN++G KALQ+VD +L AEEAERAG+D+R +YL R+A Sbjct: 98 VVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSA 245
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI) HSP 1 Score: 162 bits (410), Expect = 9.170e-43 Identity = 83/169 (49.11%), Postives = 116/169 (68.64%), Query Frame = 2 Query: 545 TTPPTQEPFPAFEPFYED--GVLKKQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPKNEDDYKNARRKLLREMQKLAMQVKD-LPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 +T P P P PF + V++K+ SS +R++FLVGLEGTGHHY V + C T VPC N CP+A+ +YP+LA P + DY+ ARR+L RE++ LA + + G+A+IA F +C K+GMMS+PN++G KALQ+VD +L AEEAERAG+D+R +YL R+A Sbjct: 36 STGPVPTPAPTIPPFSFEYPAVVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRS-KSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSA 203
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE) HSP 1 Score: 122 bits (305), Expect = 5.550e-29 Identity = 60/122 (49.18%), Postives = 89/122 (72.95%), Query Frame = 2 Query: 680 MSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPKNEDDYKNARRKLLREMQKLA-MQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 M+ VL ++C+ KV CP LC +A+V+YP L+ P++ + Y +AR++L EM+KLA + L G++++ SFG+C GMMSYPN++G KALQ+VD +L AEEAERAG+D+R +YL R+A Sbjct: 1 MADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSA 122
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A7S3W283_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W283_9SPIT) HSP 1 Score: 68.2 bits (165), Expect = 1.350e-9 Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 2 Query: 605 LKKQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCP-LAEVMYPTLANPKNE--DDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 ++KQ FS+ +R +F+ GLEGTGHH +L C + C N L++++ L K+ + + R L E QKL ++K S S G MSYP+ G + H DL+L AE AE AG+DLR++ R A Sbjct: 63 VRKQQFSNTVRFVFVAGLEGTGHHLWHAMLAGSCARSNL-CANASDTLSDLIADKLHRKKSIMFSERASGRDAQLVE-QKLVERLKIAARTVTSPTSLIIQNNALGGQMSYPDSVGTDVQMHHPDLRLLAELAEIAGVDLRVLLSMRGA 209
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A812KSC5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KSC5_9DINO) HSP 1 Score: 68.6 bits (166), Expect = 2.240e-9 Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = 2 Query: 611 KQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTL------ANPKNEDDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTR 1036 K A SS +R +F GLEG+GHH+ ++ ++P L+ ++ A+ + DY KL+ EM+ M + P G +A G P + +GMMSYPN GK +A ++ D+ A+ AE AG+DLRI+ LTR Sbjct: 60 KTATSSQVRFVFFAGLEGSGHHFWHEMIK------RLPINRSEDLSRALFDGQHGGFFNADEHSRGDYAEDIAKLMSEME---MNLSSTP-GCKVVALNGVEPQV-SGMMSYPNMGGKDRAGRNPDIFALAKLAEAAGVDLRIVLLTR 196
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A812H6X7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812H6X7_9DINO) HSP 1 Score: 67.4 bits (163), Expect = 5.660e-9 Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 2 Query: 611 KQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMY-----PTLANPKNEDDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIK--NGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTR 1036 K+ SS IR +F GLEGTGHH+ +L + + + L++ ++ P L + +E + + ++ M ++ + P + G GI +GMMSYPN+ G+ + Q+ D+ A+ AE AGIDLRI+ LTR Sbjct: 61 KKVVSSKIRFVFFAGLEGTGHHFWQEMLRRLSIS------HSADLSQELFNRRHGPGLFSSSDEQVREASAEHVVELMSEMQKNLSSAPGCNVVALNVG---GITRPSGMMSYPNFGGRDRMFQNPDMFTLAKLAEAAGIDLRIVLLTR 200
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A813BJ34_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BJ34_SYMMI) HSP 1 Score: 66.2 bits (160), Expect = 1.480e-8 Identity = 43/142 (30.28%), Postives = 70/142 (49.30%), Query Frame = 2 Query: 611 KQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPKNEDDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTR 1036 K+ SS +R +F GLEGTGHH+ +L + + L + +L + +E ++ ++ M + + +P + G +GMMSYPN+ G + +Q+ D+ A+ AE AGIDLRI+ LTR Sbjct: 66 KKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQ--ELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLSSVPGCNVVALNVGGTT-YPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTR 204
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A1Q9EVB9_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EVB9_SYMMI) HSP 1 Score: 66.2 bits (160), Expect = 2.820e-8 Identity = 43/142 (30.28%), Postives = 70/142 (49.30%), Query Frame = 2 Query: 611 KQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPKNEDDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTR 1036 K+ SS +R +F GLEGTGHH+ +L + + L + +L + +E ++ ++ M + + +P + G +GMMSYPN+ G + +Q+ D+ A+ AE AGIDLRI+ LTR Sbjct: 304 KKVVSSNVRFVFFAGLEGTGHHFWQELLRRLSISHSADLSQ--ELFNRQHGSLFSSTDERGREDLAEHVVELMSETQKNLSSVPGCNVVALNVGGTT-YPSGMMSYPNFGGPDRLIQNPDMFTLAKLAEAAGIDLRIVLLTR 442
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.190e-7 Identity = 48/150 (32.00%), Postives = 70/150 (46.67%), Query Frame = 2 Query: 602 VLKKQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCPNLCPLAEVMYPTLANPK---NEDDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 +L K S RL+F+ GLEGTGHHY+ ++ + P + +Y A K N + + + M++LA +L F S P SYP G K +Q++DL + AE AE AGID R++YL R+A Sbjct: 138 ILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGDN-MNLPRRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRRLAEWAANL--SSPGALEFFSIP------CSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSA 278
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO) HSP 1 Score: 60.5 bits (145), Expect = 1.520e-6 Identity = 49/170 (28.82%), Postives = 75/170 (44.12%), Query Frame = 2 Query: 602 VLKKQAFSSAIRLIFLVGLEGTGHHYMSGVLTNMCRTGKVPCP--------------NLCPLAEVMYPTLANPKNE---------DDYKNARRKLLREMQKLAMQVKDLPVGKASIASFGSCPGIKNGMMSYPNYDGKYKALQHVDLKLFAEEAERAGIDLRIIYLTRAA 1042 +L K+ + RL+F+ GLEG+GHH +L + + L +Y A K E ++ A ++ +++L+ + P+ +AS G C GMMSYPN+ GK K Q D++L AE AE G+D RI+ L R A Sbjct: 98 LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARRCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPL----LASLGGC-----GMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPA 258 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102188.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102188.197.1 >prot_H-elongata_contig102188.197.1 ID=prot_H-elongata_contig102188.197.1|Name=mRNA_H-elongata_contig102188.197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp MRSSTYRRIVAIILLVVSALVSYIFLHPLLVMHGPRSTQQKKTRQKVDGEback to top mRNA from alignment at H-elongata_contig102188:687..1728+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102188.197.1 ID=mRNA_H-elongata_contig102188.197.1|Name=mRNA_H-elongata_contig102188.197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1042bp|location=Sequence derived from alignment at H-elongata_contig102188:687..1728+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102188:687..1728+ >mRNA_H-elongata_contig102188.197.1 ID=mRNA_H-elongata_contig102188.197.1|Name=mRNA_H-elongata_contig102188.197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig102188:687..1728+ (Himanthalia elongata Himel1 dioecious)back to top |