mRNA_H-elongata_contig102085.190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102085.190.1
Unique NamemRNA_H-elongata_contig102085.190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A3R6WYV0_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WYV0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.670e-6
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            ++V  ++RHGARTP +  KCW GY+  WNC++ E+
Sbjct:   52 VQVQVVVRHGARTPWSGKKCWDGYDEEWNCSIREL 86
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A485LM95_9STRA (Aste57867_23089 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM95_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            I+V  ++RHGARTP +A +CW GYN  WNC++ ++
Sbjct:   49 IQVQLVVRHGARTPWSANRCWDGYNEEWNCSIRQL 83
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A6A5A2U3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A2U3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.640e-6
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            ++V  ++RHGARTP +  KCW GY+  WNC++ E+
Sbjct:   52 VQVQVVVRHGARTPWSGKKCWDGYDEEWNCSIREL 86
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A397FC07_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FC07_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.640e-6
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            ++V  ++RHGARTP +  KCW GY+  WNC++ E+
Sbjct:   52 VQVQVVVRHGARTPWSGKKCWDGYDEEWNCSIREL 86
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: W4H559_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H559_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.650e-6
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            ++V  ++RHGARTP +  KCW GY+  WNC++ E+
Sbjct:   52 VQVQVVVRHGARTPWSGKKCWDGYDEEWNCSIREL 86
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A1W0AC86_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC86_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.400e-6
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 KVHALIRHGARTPSTAPKCWQGYNITWNCNVTE-VGPLL 117
            +V  ++RHGARTP ++ KCW GYN  W CN+ + + P+L
Sbjct: 2198 QVQIMVRHGARTPWSSGKCWDGYNEVWTCNLRDQMAPVL 2236
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A067BR41_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BR41_SAPPC)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    7 VHALIRHGARTPSTAPKCWQGYNITWNCNVTE-VGPLL 117
            V  L+RHGARTP +  KCW GYN  WNC + + + P+L
Sbjct:   55 VQLLVRHGARTPYSWQKCWNGYNEAWNCQLRDRMAPVL 92
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A485LIC2_9STRA (Aste57867_21261 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIC2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.390e-5
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEV 105
            ++V  ++RHGAR P  A KCW+ Y+  WNCN  E+
Sbjct:   44 VQVQLVVRHGARAPCFADKCWKEYDEEWNCNAREI 78
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BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A1V9Z1L0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1L0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.400e-5
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTE-VGPLL 117
            + V  L+RHGARTP +  KCW GY+  WNC++ + + P+L
Sbjct:   51 VHVQLLVRHGARTPYSWQKCWNGYSEAWNCSLRDRMAPVL 90
[Close]
BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Match: A0A1W0A9T9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9T9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.280e-5
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   16 LIRHGARTPSTAPKCWQGYNITWNCNVTE-VGPLL 117
            ++RHGARTP ++ KCW GYN  W CN+ + + P+L
Sbjct:   10 MVRHGARTPWSSGKCWDGYNEVWTCNLRDQMAPVL 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102085.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A3R6WYV0_9STRA1.670e-648.57Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A485LM95_9STRA1.950e-651.43Aste57867_23089 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A5A2U3_9STRA3.640e-648.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397FC07_9STRA3.640e-648.57Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4H559_9STRA3.650e-648.57Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A1W0AC86_9STRA9.400e-648.72Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A067BR41_SAPPC1.280e-552.63Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A485LIC2_9STRA2.390e-548.57Aste57867_21261 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z1L0_9STRA2.400e-547.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0A9T9_9STRA3.280e-551.43Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102085contigH-elongata_contig102085:2154..2297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D8LEY1
KEGG rclassRC00017
KEGG koko:K14395,ko:K19284,ko:K21403
KEGG ReactionR11527
EggNOG free text desc.acid phosphatase activity
EggNOG OGsKOG3720@1,KOG3720@2759
EC3.1.3.2
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.4470193-CDS-H-elongata_contig102085:2153..22971622929560.4470193-CDS-H-elongata_contig102085:2153..2297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102085 2154..2297 +
1691679070.4468112-CDS-H-elongata_contig102085:2153..22971691679070.4468112-CDS-H-elongata_contig102085:2153..2297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102085 2154..2297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102085.190.1prot_H-elongata_contig102085.190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102085 2154..2297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102085.190.1

>prot_H-elongata_contig102085.190.1 ID=prot_H-elongata_contig102085.190.1|Name=mRNA_H-elongata_contig102085.190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
IKVHALIRHGARTPSTAPKCWQGYNITWNCNVTEVGPLLLSLRRQRV*
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mRNA from alignment at H-elongata_contig102085:2154..2297+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102085.190.1 ID=mRNA_H-elongata_contig102085.190.1|Name=mRNA_H-elongata_contig102085.190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig102085:2154..2297+ (Himanthalia elongata Himel1 dioecious)
ATCAAGGTGCACGCATTGATTCGGCATGGGGCTCGAACTCCTTCGACCGC
TCCCAAGTGCTGGCAAGGGTACAACATCACGTGGAACTGCAACGTCACCG
AGGTAGGGCCTTTGTTGCTTTCCCTGCGACGACAACGTGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig102085:2154..2297+

>mRNA_H-elongata_contig102085.190.1 ID=mRNA_H-elongata_contig102085.190.1|Name=mRNA_H-elongata_contig102085.190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig102085:2154..2297+ (Himanthalia elongata Himel1 dioecious)
ATCAAGGTGCACGCATTGATTCGGCATGGGGCTCGAACTCCTTCGACCGC
TCCCAAGTGCTGGCAAGGGTACAACATCACGTGGAACTGCAACGTCACCG
AGGTAGGGCCTTTGTTGCTTTCCCTGCGACGACAACGTGTCTGAATCAAG
GTGCACGCATTGATTCGGCATGGGGCTCGAACTCCTTCGACCGCTCCCAA
GTGCTGGCAAGGGTACAACATCACGTGGAACTGCAACGTCACCGAGGTAG
GGCCTTTGTTGCTTTCCCTGCGACGACAACGTGTCTGA
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