mRNA_H-elongata_contig102.180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102.180.1
Unique NamemRNA_H-elongata_contig102.180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102.180.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.630e-6
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  199 LSKFATCANVLYPGIYQSLLKVVDIFNFNPTGFPWVGCVININFH 333
            L++F + ANV YP +YQ LL V+D+FNF+ +     GCV+++NFH
Sbjct: 1182 LTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFH 1226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE3.630e-648.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102contigH-elongata_contig102:25839..26171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size335
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.9006658-UTR-H-elongata_contig102:25838..260001622929559.9006658-UTR-H-elongata_contig102:25838..26000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 25839..26000 +
1691679070.2839272-UTR-H-elongata_contig102:25838..260001691679070.2839272-UTR-H-elongata_contig102:25838..26000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 25839..26000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.9161623-CDS-H-elongata_contig102:26000..261711622929559.9161623-CDS-H-elongata_contig102:26000..26171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 26001..26171 +
1691679070.2911558-CDS-H-elongata_contig102:26000..261711691679070.2911558-CDS-H-elongata_contig102:26000..26171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 26001..26171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102.180.1prot_H-elongata_contig102.180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102 26001..26171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102.180.1

>prot_H-elongata_contig102.180.1 ID=prot_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MCNFSPIPLGSFLSKFATCANVLYPGIYQSLLKVVDIFNFNPTGFPWVGC
VININFH
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mRNA from alignment at H-elongata_contig102:25839..26171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102.180.1 ID=mRNA_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig102:25839..26171+ (Himanthalia elongata Himel1 dioecious)
GTGAAAGGGGTTACGAGCAAAGGTAGGTCATAGATAGGTCGAGTGAGGAC
AAAAAAGGTATAAACATGCCAAGATGAAAGTCACACTATACTTGTTAGCT
TATATCACGGAGCACGCTAAGGCCCTGAAACCTAACGCTCTACTCTGAAG
ATATATTTGTTGATGTGTAATTTCTCACCAATACCTCTCGGATCGTTTCT
TTCCAAGTTTGCTACGTGTGCTAACGTCCTCTACCCAGGGATATATCAGA
GCTTGCTGAAGGTTGTGGATATATTCAATTTCAATCCTACAGGGTTTCCC
TGGGTGGGATGTGTCATTAATATAAACTTCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig102:25839..26171+

>mRNA_H-elongata_contig102.180.1 ID=mRNA_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig102:25839..26171+ (Himanthalia elongata Himel1 dioecious)
ATGTGTAATTTCTCACCAATACCTCTCGGATCGTTTCTTTCCAAGTTTGC
TACGTGTGCTAACGTCCTCTACCCAGGGATATATCAGAGCTTGCTGAAGG
TTGTGGATATATTCAATTTCAATCCTACAGGGTTTCCCTGGGTGGGATGT
GTCATTAATATAAACTTCCACATGTGTAATTTCTCACCAATACCTCTCGG
ATCGTTTCTTTCCAAGTTTGCTACGTGTGCTAACGTCCTCTACCCAGGGA
TATATCAGAGCTTGCTGAAGGTTGTGGATATATTCAATTTCAATCCTACA
GGGTTTCCCTGGGTGGGATGTGTCATTAATATAAACTTCCAC
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