mRNA_H-elongata_contig102.180.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig102.180.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.630e-6 Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 199 LSKFATCANVLYPGIYQSLLKVVDIFNFNPTGFPWVGCVININFH 333
L++F + ANV YP +YQ LL V+D+FNF+ + GCV+++NFH
Sbjct: 1182 LTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFH 1226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102.180.1 >prot_H-elongata_contig102.180.1 ID=prot_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp MCNFSPIPLGSFLSKFATCANVLYPGIYQSLLKVVDIFNFNPTGFPWVGCback to top mRNA from alignment at H-elongata_contig102:25839..26171+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102.180.1 ID=mRNA_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig102:25839..26171+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102:25839..26171+ >mRNA_H-elongata_contig102.180.1 ID=mRNA_H-elongata_contig102.180.1|Name=mRNA_H-elongata_contig102.180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig102:25839..26171+ (Himanthalia elongata Himel1 dioecious)back to top |