mRNA_H-elongata_contig102.179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102.179.1
Unique NamemRNA_H-elongata_contig102.179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102contigH-elongata_contig102:16009..17011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size1003
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102.179.1prot_H-elongata_contig102.179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102 16011..17006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.8282957-UTR-H-elongata_contig102:16008..160101622929559.8282957-UTR-H-elongata_contig102:16008..16010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 16009..16010 +
1691679070.232589-UTR-H-elongata_contig102:16008..160101691679070.232589-UTR-H-elongata_contig102:16008..16010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 16009..16010 +
1622929559.8592687-UTR-H-elongata_contig102:17006..170111622929559.8592687-UTR-H-elongata_contig102:17006..17011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 17007..17011 +
1691679070.2763784-UTR-H-elongata_contig102:17006..170111691679070.2763784-UTR-H-elongata_contig102:17006..17011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 17007..17011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.8432934-CDS-H-elongata_contig102:16010..170061622929559.8432934-CDS-H-elongata_contig102:16010..17006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 16011..17006 +
1691679070.2668698-CDS-H-elongata_contig102:16010..170061691679070.2668698-CDS-H-elongata_contig102:16010..17006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 16011..17006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102.179.1

>prot_H-elongata_contig102.179.1 ID=prot_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MAGKYTSVYVLLLFSFCYTRSGSHFEPCTRANGVRWWVEDDNPDCKWNWG
DCCRCTCEDGEPICGTIGLLSIDPDEIDSNVTTVKEITPPPCTANAKCNC
EEDNTTQARPSTETVKFLDGIFEAGLREIIIVNIEIVGYDEVLLNTATGM
DFSAVLDGGQRAQLSGVKHDFSHLNDVGIGTPSATFGGATSAISSMFTLS
RESSSSAVVLYRGSNDAFSGESYFLNNGEIPDSPWVGIKIGLTRSEKAQC
VSRDDGILRHDEMEIFENSSIMDFFLEITGNSSIIDWSGVAYFSSASIWN
DTSSEVIYPKEMLCSSRVSRGPLGEVVIEAG*
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mRNA from alignment at H-elongata_contig102:16009..17011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102.179.1 ID=mRNA_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig102:16009..17011+ (Himanthalia elongata Himel1 dioecious)
GTATGGCTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTC
TGCTACACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGG
AGTGCGCTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGG
GTGACTGCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACT
ATAGGCCTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCAC
TGTCAAGGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACT
GTGAGGAGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAA
TTTTTGGATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAA
CATAGAGATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGA
TGGATTTTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGG
GTCAAACACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAG
TGCCACTTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGA
GCCGAGAAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGAC
GCCTTTAGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTC
TCCCTGGGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAAT
GCGTCTCGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTT
GAGAACAGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAG
CATCATTGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGA
ACGACACCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCT
CGTGTTAGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAATG
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig102:16009..17011+

>mRNA_H-elongata_contig102.179.1 ID=mRNA_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig102:16009..17011+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTCTG
CTACACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGGAG
TGCGCTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGGGT
GACTGCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACTAT
AGGCCTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCACTG
TCAAGGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACTGT
GAGGAGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAATT
TTTGGATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAACA
TAGAGATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGATG
GATTTTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGGGT
CAAACACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAGTG
CCACTTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGAGC
CGAGAAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGACGC
CTTTAGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTCTC
CCTGGGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAATGC
GTCTCGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTTGA
GAACAGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAGCA
TCATTGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGAAC
GACACCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCTCG
TGTTAGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAAATGG
CTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTCTGCTAC
ACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGGAGTGCG
CTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGGGTGACT
GCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACTATAGGC
CTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCACTGTCAA
GGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACTGTGAGG
AGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAATTTTTG
GATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAACATAGA
GATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGATGGATT
TTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGGGTCAAA
CACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAGTGCCAC
TTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGAGCCGAG
AAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGACGCCTTT
AGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTCTCCCTG
GGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAATGCGTCT
CGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTTGAGAAC
AGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAGCATCAT
TGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGAACGACA
CCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCTCGTGTT
AGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAA
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