Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 67.8 |
| Seed ortholog evalue | 1.1e-08 |
| Seed eggNOG ortholog | 2880.D8LHQ8 |
| EggNOG OGs | 2BFIX@1,2S176@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 1003 |
| Cds size | 996 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929559.8282957-UTR-H-elongata_contig102:16008..16010 | 1622929559.8282957-UTR-H-elongata_contig102:16008..16010 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102 16009..16010 + |
| 1691679070.232589-UTR-H-elongata_contig102:16008..16010 | 1691679070.232589-UTR-H-elongata_contig102:16008..16010 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102 16009..16010 + |
| 1622929559.8592687-UTR-H-elongata_contig102:17006..17011 | 1622929559.8592687-UTR-H-elongata_contig102:17006..17011 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102 17007..17011 + |
| 1691679070.2763784-UTR-H-elongata_contig102:17006..17011 | 1691679070.2763784-UTR-H-elongata_contig102:17006..17011 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig102 17007..17011 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929559.8432934-CDS-H-elongata_contig102:16010..17006 | 1622929559.8432934-CDS-H-elongata_contig102:16010..17006 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102 16011..17006 + |
| 1691679070.2668698-CDS-H-elongata_contig102:16010..17006 | 1691679070.2668698-CDS-H-elongata_contig102:16010..17006 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102 16011..17006 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102.179.1 >prot_H-elongata_contig102.179.1 ID=prot_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MAGKYTSVYVLLLFSFCYTRSGSHFEPCTRANGVRWWVEDDNPDCKWNWG
DCCRCTCEDGEPICGTIGLLSIDPDEIDSNVTTVKEITPPPCTANAKCNC
EEDNTTQARPSTETVKFLDGIFEAGLREIIIVNIEIVGYDEVLLNTATGM
DFSAVLDGGQRAQLSGVKHDFSHLNDVGIGTPSATFGGATSAISSMFTLS
RESSSSAVVLYRGSNDAFSGESYFLNNGEIPDSPWVGIKIGLTRSEKAQC
VSRDDGILRHDEMEIFENSSIMDFFLEITGNSSIIDWSGVAYFSSASIWN
DTSSEVIYPKEMLCSSRVSRGPLGEVVIEAG* back to topmRNA from alignment at H-elongata_contig102:16009..17011+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig102.179.1 ID=mRNA_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig102:16009..17011+ (Himanthalia elongata Himel1 dioecious)
GTATGGCTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTC
TGCTACACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGG
AGTGCGCTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGG
GTGACTGCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACT
ATAGGCCTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCAC
TGTCAAGGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACT
GTGAGGAGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAA
TTTTTGGATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAA
CATAGAGATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGA
TGGATTTTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGG
GTCAAACACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAG
TGCCACTTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGA
GCCGAGAAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGAC
GCCTTTAGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTC
TCCCTGGGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAAT
GCGTCTCGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTT
GAGAACAGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAG
CATCATTGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGA
ACGACACCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCT
CGTGTTAGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAATG
GAG back to topCoding sequence (CDS) from alignment at H-elongata_contig102:16009..17011+ >mRNA_H-elongata_contig102.179.1 ID=mRNA_H-elongata_contig102.179.1|Name=mRNA_H-elongata_contig102.179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig102:16009..17011+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTCTG
CTACACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGGAG
TGCGCTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGGGT
GACTGCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACTAT
AGGCCTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCACTG
TCAAGGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACTGT
GAGGAGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAATT
TTTGGATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAACA
TAGAGATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGATG
GATTTTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGGGT
CAAACACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAGTG
CCACTTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGAGC
CGAGAAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGACGC
CTTTAGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTCTC
CCTGGGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAATGC
GTCTCGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTTGA
GAACAGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAGCA
TCATTGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGAAC
GACACCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCTCG
TGTTAGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAAATGG
CTGGAAAGTACACATCTGTTTACGTGCTCCTTCTCTTCAGCTTCTGCTAC
ACACGTAGTGGTAGCCACTTTGAACCCTGCACCAGAGCCAACGGAGTGCG
CTGGTGGGTGGAGGATGACAATCCTGATTGTAAATGGAACTGGGGTGACT
GCTGCAGATGTACCTGTGAAGACGGGGAACCTATCTGCGGAACTATAGGC
CTTTTGAGTATCGATCCGGACGAAATCGATTCCAATGTGACCACTGTCAA
GGAAATCACACCACCCCCATGCACGGCCAACGCGAAGTGCAACTGTGAGG
AGGACAATACTACGCAAGCACGGCCCTCGACCGAAACTGTTAAATTTTTG
GATGGAATTTTCGAAGCAGGATTAAGAGAGATCATCATTGTTAACATAGA
GATCGTGGGCTACGACGAAGTATTACTGAATACAGCCACTGGGATGGATT
TTAGCGCAGTTCTGGACGGAGGACAAAGGGCTCAACTGTCTGGGGTCAAA
CACGACTTTTCACACCTAAACGACGTGGGAATTGGAACTCCTAGTGCCAC
TTTTGGTGGTGCGACCTCGGCGATAAGTTCCATGTTTACTTTGAGCCGAG
AAAGTTCATCTAGTGCCGTGGTTCTATACAGAGGATCCAATGACGCCTTT
AGCGGGGAGTCTTATTTCCTTAACAACGGCGAAATACCAGATTCTCCCTG
GGTTGGAATTAAAATCGGGCTGACGCGGAGCGAGAAAGCCCAATGCGTCT
CGCGAGACGATGGTATTTTGCGCCACGACGAGATGGAAATCTTTGAGAAC
AGCAGCATCATGGATTTTTTCTTAGAAATTACTGGGAACAGCAGCATCAT
TGATTGGTCCGGAGTTGCTTATTTTAGCTCAGCAAGTATTTGGAACGACA
CCTCCTCTGAGGTGATATATCCCAAGGAGATGCTTTGTAGCTCTCGTGTT
AGTCGAGGACCACTTGGGGAGGTGGTCATTGAAGCCGGGTAA back to top
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