mRNA_H-elongata_contig102.178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102.178.1
Unique NamemRNA_H-elongata_contig102.178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 6.540e-92
Identity = 177/400 (44.25%), Postives = 253/400 (63.25%), Query Frame = 1
Query:  916 CYESITDGLT--CTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNL-REKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEPILR 2106
            C +  T  L   CT CS  A RI    V  +V   V + V  + +S    + R+G++ARL + +P++S  I+IVAWQILTQF + ANV YP +Y+  L  +D+ NF+ +W+ S GC  ++DFH +    T+ P++ +L L   Y           E L+++ N+HVS +L + FL+YSS S+ +F+ F C+ L+DG +YLRAD TI+CD  +H+   ++A F ++VY VGIP  +AFLLF+ R VL D +  RE+     S SDLWKPYKP  FYYEV+EC RR +L GV+  I  ++A QIA  LM++F F ++SEGLAP+ S  DAW+NR GH VV  SMY ALLLKVD+S +   SQ V+E++L++ H  MI+ V+ E  +  ++LK E   EP  R
Sbjct:  848 CSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVEQRQEPTTR 1247          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 2.050e-90
Identity = 180/394 (45.69%), Postives = 261/394 (66.24%), Query Frame = 1
Query:  916 CYESITDGLT--CTGCS-NIAWRIMTPVVALIVAFVVFYTVFKHLISPE-SMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNL-REKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKE 2082
            C +  T+ L+  C+ CS N A  I   VV  ++   +   V  ++ S E  M  + GI+  + R +P++S  I+IV+WQILTQF + ANV YP +YQ LL V+D+ NF+ +WL S GC ++++FHG+  + TI PI+ +L+L   Y   AR      E L I+ N+HV+ +L + F VYSS SS +F+ F CD LD    YLRAD +IEC+   HR + ++A F I++Y VGIP  +A LLFKSR VL D++  RE+   + SIS+LW+PYKP  FYYEV+EC RR +L GV+  I  ++A QIA  L+++F F ++SEGLAPY S  D W++R+GH VV  SMY ALLLKVD+S++   SQ VFE +L+++HV MI+ V+ EA ++ ++L++E
Sbjct: 1102 CSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREE 1495          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 2.130e-88
Identity = 173/395 (43.80%), Postives = 248/395 (62.78%), Query Frame = 1
Query:  937 GLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNL--REKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEPILRNNR 2115
              TC  CS+ A  I       +V  V+   V  ++ S E      GI+ R+ R +P++S  I++VAWQI+TQF   ANV YP +YQ+ L  +++ NF+ +W+ S GC ++VDFH +  + TIGPI   L+L+  Y    R +  + E LE VR++HV  +L + F VYSS S+ +F+ F C+TL+DG +YL AD  IECD  +H+   ++A F +L+Y  GIP  ++FLLF+ R VL  +    ++      S SDLWKPYKP  FYYEVVEC+RR +L GV+  I  +S+ QIA  L+++F F +ISEGLAPY S  D W+NR+GH VVV SMY ALLLKVD+S +   SQ VFE +L+  HV+M+V+ +AE  +    L+ E   +  L+ +R
Sbjct: 1212 SFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQHLQEDR 1606          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 2.120e-87
Identity = 166/372 (44.62%), Postives = 244/372 (65.59%), Query Frame = 1
Query:  937 GLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLL-DKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAE 2049
            G +C+ C + +  I+  V   ++A  V   V  +++S E+ E R  ++ RL   +P++S  I+IV+WQILTQFA++ANV+YPG+YQ  L  + +  F+  WL S GC +++ FHG+    TIGPI  +L+L   Y    R   E+ E L I+ ++HV   L + FLVYSS SS +F+ F CD L+DG +YLR D  IECD  +H+   ++A F IL+YP+GIP+ ++ LLFK R VL  DK  R+    + S S+LW+PYKP  FYYEV+EC RR +L G++  I  ++A Q+A  LM++F F ++SE ++PY S  + WVNR+GH VV  SMY ALLLKVD+S++   SQ+VFE +L+++H  MI+ V+ E
Sbjct: 1028 GYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQFASAANVVYPGVYQQFLDGLKVFGFDLGWLMSAGCVLDMGFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGKNYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPMLYSILLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1399          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 1.010e-86
Identity = 177/400 (44.25%), Postives = 249/400 (62.25%), Query Frame = 1
Query:  916 CYESITDGLT--CTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNL-REKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEPILR 2106
            C +  T GL+  C+ CS+ A  I+      +VA +V   V  +++S +  E   G + RL R +P++S  I++V+WQILTQF   ANV YP +YQ  L  + + NF+ +W+ S GC + VDFH +  I TIGPI+ +L L   Y    R    + E L+++ NRHVS +L +   VYSS SS +FQ F C++L DG +YLRAD  I CD  +H+ L ++A   ++VY VGIP  +  LLF+ R VL      RE+   + S S+LWKPYKP  FYYEV+EC RR +L GV+  I  ++A QIA  L+++F F V+SEGLAPY S  D W++R+GHAVV  SMY ALLLKVD+SN+ + SQ VFEV+L++ H  MI++++ E  +    L       P LR
Sbjct: 1659 CSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVGERDGPALR 2058          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 3.100e-86
Identity = 170/387 (43.93%), Postives = 244/387 (63.05%), Query Frame = 1
Query:  937 GLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLL-DKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGE 2094
            G+ C+ CS+ A  I   V   +   +    +  + +S ES     G++ R  R +P++S  I+IVAWQILTQF + AN+ +P +YQ  L  +++ NF+  W+ S GC  +VDFH +  + TI PI+ +L L A Y   AR  H S E L+ V ++HVS +L + FLVY+S S+V+FQ F C+ LDD  +YLRAD  IECD  +H    ++A F I++Y VGIP  +   LF+   VL  D+  RE+   +   +DLWKPY+P  FYYEV+EC+RR +L GV+  I  ++A QIA AL+++ VF +ISE LAPY S  D W+ R+GHAVV  SMY ALLLKVD+S++   SQ VFE +L++ HV M+ +V+ E  M+  +L  E  G+
Sbjct:  578 GMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQ 964          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 4.170e-86
Identity = 168/391 (42.97%), Postives = 240/391 (61.38%), Query Frame = 1
Query:  937 GLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVL-LDKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEPILR 2106
            G TC+ C N A  I+      ++       V  ++           +   L R LP+++  I++VAWQI+TQF ++ANV YP +YQ  L  +D+ NF+ +W+ S GC M++DFH +  + TIGPI+ +L L A Y   +R    +   L++V +RHVS +L ++FLVYS  SSVVFQ F CD L+ G  YLRAD  IECD  +H+   ++A F IL+YPVGIP F+  LL + R VL  D + RE    + SIS+LW+PY+P  +YYEV+EC RR +L G++  I  ++A QIA  L+++ VF V+SE L PY    D WV+R+ HAVV  S+Y ALLLKVD+SN+   SQ VFE +L++ H  MI+ V+ E  + G   + +   EP  R
Sbjct:  618 GFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRVKEQDEPAPR 1008          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 7.310e-86
Identity = 166/372 (44.62%), Postives = 244/372 (65.59%), Query Frame = 1
Query:  937 GLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLL-DKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAE 2049
            G +C+ C + +  I   V   +VA  V   V ++++S E+ E R  +  RL   +P++S  I+IV+WQI+TQFA++ANV+YPG+YQ  +  + +  F+  WL SVGC +++DFHG+    TIGPI  +L+L   Y    R   E+ E L I+ ++HV   L + FLVYSS SS +F+ F CD L+DGN YLR D  IECD  +H+   ++A F IL+YP+GIP+ ++ LLF+ R VL  DK  R     + S S+LW+PYKP  FYYEV+EC RR +L G++  I  ++A Q+A  LM++F F ++SE ++PY S  + WVNR+GH VV  S+Y ALLLKVD+S++   SQ+VFE +L+++H  MI+ V+ E
Sbjct: 1088 GYSCSKCFSRSGGIAFAVGLAVVAVFVAVVVIRYIMSGEAGERRIYVFERLGWYVPLQSVKIVIVSWQIVTQFASAANVVYPGVYQQFIDGLKVFGFDLGWLLSVGCVLDMDFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGN-YLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPVLYSILLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1458          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 2.480e-85
Identity = 174/384 (45.31%), Postives = 242/384 (63.02%), Query Frame = 1
Query:  925 SITDGLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEARTGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLL--DKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYT 2070
            S++   TCT C +    I   VV  +        +  HL+S E   AR G++ R+++RLP++S  I++V WQILTQF++ ANV YP +YQ  L  V+I+NF+  W+PS GC + VDFHG+  + TIGP++ + +L   YT   R+   S+  L+ +R++H+S +L I FLVYSS S+ VFQ F C+ LDD   YLRAD  IECD   H+   ++A   ILVYPVGIPLF+ +LL+K R VL   D   R+    +  ISDLW PYKP RFYYEV+EC RR  L GV+  I  ++A Q+A  LM++F F V S  LAPY S  DA ++ +GH +V  SMY ALL KVD+S++   SQ VF  +L++ H  M+V V+ E  +  Y+
Sbjct: 1372 SMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDFHGRLLVATIGPLVALALLAITYTVAKRRSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIPLFYGYLLYKHRRVLKSEDAGKRQTSPQVQPISDLWFPYKPGRFYYEVIECVRRMSLTGVVVFIYPNTAAQVAVTLMIAFSFVVTSVVLAPYVSKWDASISLVGHVIVFTSMYTALLSKVDVSDERADSQEVFAGVLVAAHACMVVAVVVETIVIFYS 1755          
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 2.480e-80
Identity = 155/334 (46.41%), Postives = 218/334 (65.27%), Query Frame = 1
Query: 1096 RLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDIINFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHESKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRADNTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNLREKHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAAALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISNDSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEP 2097
            ++  +S  I++V WQILTQF+  ANV YP IYQ  L V+D++NF+  W+ S GC ++ DFH      TIGPI+V+ +L A Y   + +   S E +  V  +HVSA+L + FLVYSS SS VF++F CD L D NSYLRAD +I+C   +HR L I+AVF +L+YPVGIPLF+  LL+ +R  L D + R+ H    +IS LW+PY P R+Y EVVEC RR +L GV+  I  +SA QIA +L+++F F VISE LAP+ S  D WV+R GH ++  +M+ ALLLKVD+S++   SQ +F  +L+  ++++    +AE       +K E  G P
Sbjct:  698 KVSFRSLKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDIGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLGATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADSNSYLRADYSIQCSSTKHRALQIFAVFMVLLYPVGIPLFYGILLYNTREALKDGSCRQAHPQAKTISALWEPYTPKRYYNEVVECGRRMLLTGVVVFIYPNSAAQIAISLLMTFAFLVISEVLAPFASAWDCWVSRCGHILIFVTMFVALLLKVDVSDEREGSQRLFAGILVVTNLVLFGAAVAEMVWMWCAVKMEENGSP 1031          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G301_ECTSI6.540e-9244.25Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K0E9_9PHAE2.050e-9045.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI2.130e-8843.80Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G2X5_ECTSI2.120e-8744.62Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5Y7_ECTSI1.010e-8644.25Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI3.100e-8643.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHH1_ECTSI4.170e-8642.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE7.310e-8644.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY65_9PHAE2.480e-8545.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV1_ECTSI2.480e-8046.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102contigH-elongata_contig102:1537..8133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue3.7e-90
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size4766
Cds size1449
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102.178.1prot_H-elongata_contig102.178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102 2305..5584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.733427-UTR-H-elongata_contig102:1536..23041622929559.733427-UTR-H-elongata_contig102:1536..2304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 1537..2304 +
1691679070.194649-UTR-H-elongata_contig102:1536..23041691679070.194649-UTR-H-elongata_contig102:1536..2304Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 1537..2304 +
1622929559.7858646-UTR-H-elongata_contig102:5584..81331622929559.7858646-UTR-H-elongata_contig102:5584..8133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 5585..8133 +
1691679070.22318-UTR-H-elongata_contig102:5584..81331691679070.22318-UTR-H-elongata_contig102:5584..8133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102 5585..8133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.7530282-CDS-H-elongata_contig102:2304..26881622929559.7530282-CDS-H-elongata_contig102:2304..2688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 2305..2688 +
1691679070.2056093-CDS-H-elongata_contig102:2304..26881691679070.2056093-CDS-H-elongata_contig102:2304..2688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 2305..2688 +
1622929559.7728002-CDS-H-elongata_contig102:4519..55841622929559.7728002-CDS-H-elongata_contig102:4519..5584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 4520..5584 +
1691679070.216208-CDS-H-elongata_contig102:4519..55841691679070.216208-CDS-H-elongata_contig102:4519..5584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102 4520..5584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102.178.1

>prot_H-elongata_contig102.178.1 ID=prot_H-elongata_contig102.178.1|Name=mRNA_H-elongata_contig102.178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=483bp
MIELSYGLLSKFSLWSQGRRTPPGTKTSIITKLISTCNSYPCLLFVEPDC
YESITDGLTCTGCSNIAWRIMTPVVALIVAFVVFYTVFKHLISPESMEAR
TGIMARLLRRLPIKSFNIIIVAWQILTQFATSANVIYPGIYQSLLKVVDI
INFNPTWLPSVGCAMNVDFHGQFFIMTIGPILVILMLIAPYTYVARKYHE
SKEVLEIVRNRHVSALLFILFLVYSSTSSVVFQVFNCDTLDDGNSYLRAD
NTIECDEVRHRDLMIWAVFAILVYPVGIPLFFAFLLFKSRSVLLDKNLRE
KHGSMGSISDLWKPYKPMRFYYEVVECSRRTMLIGVMAVIQDDSATQIAA
ALMLSFVFFVISEGLAPYESHMDAWVNRLGHAVVVFSMYYALLLKVDISN
DSLLSQNVFEVMLISIHVLMIVLVIAEATMKGYTLKKEAGGEPILRNNRY
RSQETPTSSRSPNVTVTKVDSDEIQLSVCRQQ*
back to top

mRNA from alignment at H-elongata_contig102:1537..8133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102.178.1 ID=mRNA_H-elongata_contig102.178.1|Name=mRNA_H-elongata_contig102.178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6597bp|location=Sequence derived from alignment at H-elongata_contig102:1537..8133+ (Himanthalia elongata Himel1 dioecious)
TTCATGCATCATTATTAGTTGCAATTACGAGACTAGTTGTTTATCTTACC TTTCTTCGCCCTTTCTTCGATGCTATTTTTCTATTTTCTGTAATAAATAT ACTTTCCCTACCTACTACCTACGCCCTGACTCTAGCTAATACACGCCCTA TCATCACGCGTCTGTACTCTTCTCTTAACTCGCTTGATCTCCTTCCTTAA CTCGTACATATTAGTCGGATGATCTTTAACCACCTCGTGTTCTAGTGCCT ATCACTGATGTACGATGAAATCTTGAACCACTCTATGTAATGTGAACTAA TCTCTTGTGAAGAGGTTTTGCTCATAGGTAGGAATGCACACACCACACGA ACCTTACGATAGTTGGTCCCCTTGAGTTTACCATTCTTTGTATGATAAAG GTCTCGATGTTCGGAGGTTTTAATTGAGTTCATATGTTGTATAGCAAAAA GCGTTATGTAACTATCTCGAAACATTCTCTCGCCTACAATACGTCAAACT AGGTCAGGTAGATACGGCGTATTCTTCTAAACATAATTGGGTTAACTATT GGGTGACGAGGTAATTTAAGAATGGCACGTGCGATATGTTGTTATATGAG GGCACTAGAAATATCAGTAGTATACAAGACCAAGGATCCAACCAAGCCAC CCAAGAATTTCAGAATAAACTTCGACATCAGCATGAAGGATTAAGGGCTG TTGGAGGAGGTCTACTCAAAAAGCTCTCGTAATCAGTTATCTATCTGCTC ATTTTGATTTCTTTTTTAATGATTGAATTATCATACGGGTTGTTGTCAAA ATTTAGCCTTTGGTCTCAAGGTAGAAGAACGCCACCCGGAACGAAAACGT CCATTATAACCAAACTTATAAGCACCTGCAACTCATATCCATGTCTATTG TTTGTGGAACCAGACTGCTATGAAAGTATAACGGATGGCTTAACCTGCAC AGGGTGCTCCAACATTGCCTGGAGAATAATGACTCCTGTGGTAGCTCTTA TTGTCGCATTTGTCGTCTTCTATACTGTCTTCAAGCACCTAATTTCGCCG GAGAGTATGGAGGCGAGGACCGGGATCATGGCCCGCTTGCTTCGCAGGCT GCCGATCAAATCTTTCAACATCATCATCGTGGCTTGGCAGATCCTAACCC AGGTGACCCCCCCCCCAAAAAAAATAAAATAAAAAATGAACCACTGAGCC CATTTATTACATTGATTACTCAGATGAAATCTCTTTACAATGTGATTAAA TATGCCTTGCCGAATGGTATATTAGACGTCTTTCCTAAATTAGGATGTAA GCACTTAAGGGATTCTAGAAAGGCACTGTCGTTTAAGCCGACCCTTATGG TTAATGAAATGAAGATTAAAAAACGTTTTTTCCTAATATTGACCGCGATG CGAAACGCATTTATGTGTTAGAAAACACGGTTTTCGGATTCTTTCTTTTC TTAGAAGCTTTTGGTGAAAGAGCAGTTTATCATTAATCATCGCGTCGTCA TAGGTAAATCTCCCTCGGACGACTGGTGGAAGAATACGTTTAAACGTTAG TTATTAGCTAATTAAAAATAGATCTTGCGTTGGATGGCTGCGTTGCGGCG ATGGTGGCAACAGGTGGCAACATTTCTGTACGGTAAACAGAGAATTTGGA CCATCGGTCAGTGGGCACTCGTTTTGGGATTGCTCGATAGCGAAGATACA CGAAATATATATCGGCTGGGCAACAACTTGGAGGTAGGATAGTAAGTATT CAGACGGTTTGAGGAAGCACATCACAAACAGCCCAAGCAACGTAGTGCTT GCTGTGATGTAGAACCTGGGGAGTAACTACGCGTACATCGGCATCAAGCG CCCCGAAACCATGAGCACACCGCAAAAATAAGAAGTATGCGACAACCTGA TTTAATAGTAAACGGGTTTGCTGACTGATCAGCTAATGGGCAACACTATG CCCTTTCATGGCAGCAATCACATAGATAATGTTTAAACGAGTTTGTGGTA TACTCTTTTTCTCTTGCGTTGTGCTCGTGACCCCGGGGCGCTTGACGCCG ATGCAGGCATAATCAATAGCTGTTTGTTTTTATCACAGCCGTCACTCCCT TGTCGGGGGTATGGAAGCCGTGCGTCTAAAGCTGTTACAAGACCAGTTCC ACCTCGTAGTGTTTGCCTAGCCGAGGTGAATGTTCGGGCATGGTCGTAGT CCTACTAAGGGTTTGAAACGTCTGCTCTCACGCTGTGCGCGTCATTGCCC TTGCCCTTCCCGGGATACGCTGCTGGTGCGACGCTCAGCTGCAACAATCC ACTGAGCACAAAATAAGATACGTAAGCCCACCCTCTTGAGTACATAACAG CAACGAAAGGGCAAGAGAACCACTATATATCACATAAAAAAATTGAGCAC TTAGTTTACAGCAGGGTTGTATCACATCATAAATTTGAGTATCAGAAAAA AACTTTGGAACTTTGTTATCCATAAGAGTCGGCTCTAAGAATAAAACGAG AAAGTTATAGTCTGGCGAATGTCTGGATCGAGCCAATAAAAATATTGATT TGTAGCCGCGACCCAGAGATCAGGTTGAGAAAATCCAAGAGCTCCACCCT TCACGCCGATGCGATCGACTTTTAATCATAAGGCCAGGCCTTGAAATTCT TGGGAAAAAGTCGGTGCCTAACTGTATCAACCAAAAAATATAAGCGGTGG GATAGTTTTGTGCCTATGTGCGTATGTGTGTGCTCCTCAAATGAAAGGCT TGACATATTACCTACGGCTCTATAAAGGTGAGAAGGGTTAGGGGCAAACC TAGGTCATGGGTTGAGTTGGAAGAAAAATAATATAAATGTGCAAGAATGA AAATAACACCAGACTTATAAGAGTTTATCACTGAGCATGCTGGAAACCTG AAACCTAACGATCTACTCTGAAACTCTCTTTGTCGATTTGTAATTTCTCA CCAATACCCCCCGTCGTATCGTTTCTTTCGAAGTTTGCTACGAGTGCTAA CGTCATCTACCCAGGGATATATCAGAGCTTGCTGAAGGTTGTGGATATAA TCAATTTTAATCCTACATGGTTGCCCTCGGTGGGATGTGCGATGAATGTG GACTTCCATGGACAGTTTTTCATCATGACGATTGGGCCCATCTTGGTCAT CCTGATGCTGATAGCGCCGTATACTTATGTCGCGCGCAAATACCACGAAT CAAAGGAGGTTCTCGAGATCGTTCGGAACAGGCATGTATCCGCTCTCCTC TTTATATTGTTCCTGGTGTACTCAAGCACCAGCTCTGTAGTGTTCCAGGT GTTCAACTGCGACACCCTCGATGACGGCAATAGTTATCTTCGGGCAGATA ACACCATCGAATGTGACGAGGTCAGACACCGAGATCTTATGATCTGGGCA GTGTTCGCGATCTTGGTGTATCCAGTAGGGATACCTCTATTTTTTGCATT TCTTCTGTTCAAAAGTCGTAGTGTGCTGCTTGACAAGAATCTTCGTGAAA AACACGGGAGCATGGGGTCAATTTCGGACCTCTGGAAACCGTACAAGCCG ATGCGGTTTTATTACGAAGTCGTCGAGTGCAGTCGGCGAACAATGCTCAT AGGCGTGATGGCGGTAATACAAGACGATTCTGCCACCCAGATTGCGGCGG CTCTTATGCTTTCATTTGTCTTTTTCGTCATATCGGAGGGGTTGGCACCG TACGAGTCGCACATGGACGCCTGGGTGAACCGATTGGGGCACGCTGTTGT GGTTTTCAGTATGTATTATGCATTGTTGTTAAAGGTTGATATTTCAAACG ATTCTCTTCTTAGTCAGAACGTGTTTGAGGTTATGCTGATATCTATACAT GTGCTTATGATAGTTTTAGTAATCGCTGAGGCGACTATGAAGGGGTATAC CCTGAAAAAAGAGGCCGGTGGAGAACCTATACTAAGAAATAACCGGTATC GGTCACAAGAAACTCCGACTTCTTCCCGCTCACCGAATGTCACGGTGACG AAAGTTGACAGCGACGAGATACAGCTATCAGTATGCAGGCAACAGTGAAG AACTACGTGGGGAAGCTCGGGGGCTAGGTGTTACTCCACGTTAGCCTCGC CCATACTTGACGCAGTTTTTCTACGAGCAGCCGGGCAACCAGACCGGAAA CGTATATATCTTCCTTTAACCACATTCTAATTAATACCAGATATATACGG TGCACTCGGCATCCATATTGGCCTGAGTGGGTTCCTGATCTTAAGGTACC CAAACTCGTTTTTGGCGGTGGATTGTTTGATTTAATGTTCGGGATGTGCC AGGGCTTGGTGTAAATGTTGGACGAGGGATGTCACCTCCCATACAAGGGT TACTTGATCGTGGTATATACCTTTATATGTGTTTGGTATATTGTGTTAGT CGCGGTATATGGATATGGTCGCGCGTATTTGGAGTTTGGTGCATTAACTT ATCGGCGACCCATCTCTCGCGATCTCGTTCAAGGATATAAAATTCCTGTG CTATTTCGTATGGTAATTTGTCCTCTTACGTGTTGCCCCCGTGTTATTTA TTGCGAGCGAAGCGAGCCTTTAATCGATAGGGAGGCCCGTAATAACTAGC AACTCGGGTAGCGCCACGATTTCAGCAGACTTTCGCGACATGAAAAAGTA TCTTCAGACGCACAAATATTGGCTCTAGTGTCACCGCACATAGTTTGAAA CTCGTCAAGTACAACGGCACCTCCTGTTTCGAACGCAGAAGGATTGTGCA CGCCCGCAATAGCACTGTGGACAAATGCCTAAGGGATATAGGCGTAGAGG AGAGTAAGGACTTCGACTGACCAACTGTGTTACCCCCATAAACTCTGCTA CCTCTGGGTACGATGTCCCCAAACACGTCCGTGAGACCACAGCGAAGCCC GGCTGAACAGTGGTTTGAAGGCATGAAGAGGAAACGATATATGTATCGCG AGTGATCTAGCGCCCCATATAACGTAGAAGAGCTTTGGCGGGGGAACGAG CCTCGTGAATAGTGATATCGGGCACAGGAGTCTCACGCGAAGGAAGCATT GAATCGCCAGCGTCGAGAGCAACGAGCCGAGCAAAAGGCGGCGCTTGCAG CGTACGACAGGGAGCGGCCGCAGCAGCAGGAGCACCTGCGACCTTAACAA CAAGAACAGACCGCGCAAGCTGCAGGGAACTACCCACCCTCTGCTTCTAC TGCGTTGTGCTGTTGTTTTTCTATAGGATTCTTCATGCTTTGATATGTGG TATGGGCCTACTGTGGGGGTTTACCCTCAAATATATATATATATATATAT ATATATATACTAGAACAAACGAATTTCATTAATGCTGGTAATGAGTTCAC TATAGGGTACGACAAAATAAGGCCATAAACGTCGGATGTTGGTATATGTC ATACAACGCGTACTCTCGCCAAACACTTAAATTTATACAGCAAGCTGTAT ATTTCATGACCTCCACCTAGCTTTTTACTTTGCTATGTATGGCACAGCTT CTTTCGTCTGTACACTTAAGGTATTTCCGCTGTCTGTATCATATCGTGGA TCGCGCTCTGGGAGTATGATGTTGTAGTTGTTGTCTCAACTACGATGTTG CCACGGTCGACCCTCTCTCCGTACGTGTATCTTGTAACTTTTCCCCTACC GTACGATATATTGTTGCTGATGAGGTGGCGGCCGCAGCGTGGTCTGACAA GAGGGACGAGGGTAAGCAGGAGTCACGTTAGCAGCTACCCCTCACACCCT GCTCGACGATTACCATGCACAAGAGTCAGGGGGAGAGGGTGGAAAAGGTG GTGGTCGACCTGGGGAAGTCCGAAGCAGCCGCAGAGCGAACCTTAGTCTG ATTCAGTCGCGCCAAGCGACTGGTAGACGTCTTAGTGGCGCCCATACCTT TCGACAGGCTTTCCAAGCAAGGGGGGGAATATTTTTGAGGCTAAGATTTG GAGAGGAAAGGCGCATCCAAGCGCTGGTAGTTGAGACACTTCGACGTAAC GGGGTGGGAGTTGCATAGTTCGTCGGTGTTGATAAGTGTGTAGAGCTTAG CCTTTGAAGAGGGAGAAGTAATACTATCGATCACATGCGGAATAATGAAG TGCTCCTCAGGCCACCACATACAGCTGACAACAGTTAATTCCCTAACCTA CGCGCGAGCGTTTAGCCATAGATATATATAGTATATTCCTATTCCGTAGT TATCTTTTTTCTTTTTCCTTTTTCTGATGGCAAGGAAATATATATATGTA GCATATAACTTTTTTTCATGAGATCAATAACTGCGGTTTTTTATAAGAAC GTTTTATGCAATGTTCAACGTACTATTTTTGGTGTTGTCCTTGTCCTGTA ATCATTGTGTCGTATGCTAAAATTCCAACGGTGCGTTTTTTCATAAGAAC GGCTTTCCCGTAGTCGTTGGGTGGTCAGGCGTTGTTTTTTTAATTTTTGA ATTGATTCGGGAATTCTCACATAAGCTGATGTCAAAATCCAGCCCGTGGT CACAAGGTAAAAAGACCACCACCCGGAATGAGAAAAACATTCAAGGTACA CTCCAATACAAAATGAAACGGCAATAATGGTACACAATACAAATACT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig102:1537..8133+

>mRNA_H-elongata_contig102.178.1 ID=mRNA_H-elongata_contig102.178.1|Name=mRNA_H-elongata_contig102.178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2898bp|location=Sequence derived from alignment at H-elongata_contig102:1537..8133+ (Himanthalia elongata Himel1 dioecious)
ATGATTGAATTATCATACGGGTTGTTGTCAAAATTTAGCCTTTGGTCTCA
AGGTAGAAGAACGCCACCCGGAACGAAAACGTCCATTATAACCAAACTTA
TAAGCACCTGCAACTCATATCCATGTCTATTGTTTGTGGAACCAGACTGC
TATGAAAGTATAACGGATGGCTTAACCTGCACAGGGTGCTCCAACATTGC
CTGGAGAATAATGACTCCTGTGGTAGCTCTTATTGTCGCATTTGTCGTCT
TCTATACTGTCTTCAAGCACCTAATTTCGCCGGAGAGTATGGAGGCGAGG
ACCGGGATCATGGCCCGCTTGCTTCGCAGGCTGCCGATCAAATCTTTCAA
CATCATCATCGTGGCTTGGCAGATCCTAACCCAGATGATTGAATTATCAT
ACGGGTTGTTGTCAAAATTTAGCCTTTGGTCTCAAGGTAGAAGAACGCCA
CCCGGAACGAAAACGTCCATTATAACCAAACTTATAAGCACCTGCAACTC
ATATCCATGTCTATTGTTTGTGGAACCAGACTGCTATGAAAGTATAACGG
ATGGCTTAACCTGCACAGGGTGCTCCAACATTGCCTGGAGAATAATGACT
CCTGTGGTAGCTCTTATTGTCGCATTTGTCGTCTTCTATACTGTCTTCAA
GCACCTAATTTCGCCGGAGAGTATGGAGGCGAGGACCGGGATCATGGCCC
GCTTGCTTCGCAGGCTGCCGATCAAATCTTTCAACATCATCATCGTGGCT
TGGCAGATCCTAACCCAGTTTGCTACGAGTGCTAACGTCATCTACCCAGG
GATATATCAGAGCTTGCTGAAGGTTGTGGATATAATCAATTTTAATCCTA
CATGGTTGCCCTCGGTGGGATGTGCGATGAATGTGGACTTCCATGGACAG
TTTTTCATCATGACGATTGGGCCCATCTTGGTCATCCTGATGCTGATAGC
GCCGTATACTTATGTCGCGCGCAAATACCACGAATCAAAGGAGGTTCTCG
AGATCGTTCGGAACAGGCATGTATCCGCTCTCCTCTTTATATTGTTCCTG
GTGTACTCAAGCACCAGCTCTGTAGTGTTCCAGGTGTTCAACTGCGACAC
CCTCGATGACGGCAATAGTTATCTTCGGGCAGATAACACCATCGAATGTG
ACGAGGTCAGACACCGAGATCTTATGATCTGGGCAGTGTTCGCGATCTTG
GTGTATCCAGTAGGGATACCTCTATTTTTTGCATTTCTTCTGTTCAAAAG
TCGTAGTGTGCTGCTTGACAAGAATCTTCGTGAAAAACACGGGAGCATGG
GGTCAATTTCGGACCTCTGGAAACCGTACAAGCCGATGCGGTTTTATTAC
GAAGTCGTCGAGTGCAGTCGGCGAACAATGCTCATAGGCGTGATGGCGGT
AATACAAGACGATTCTGCCACCCAGATTGCGGCGGCTCTTATGCTTTCAT
TTGTCTTTTTCGTCATATCGGAGGGGTTGGCACCGTACGAGTCGCACATG
GACGCCTGGGTGAACCGATTGGGGCACGCTGTTGTGGTTTTCAGTATGTA
TTATGCATTGTTGTTAAAGGTTGATATTTCAAACGATTCTCTTCTTAGTC
AGAACGTGTTTGAGGTTATGCTGATATCTATACATGTGCTTATGATAGTT
TTAGTAATCGCTGAGGCGACTATGAAGGGGTATACCCTGAAAAAAGAGGC
CGGTGGAGAACCTATACTAAGAAATAACCGGTATCGGTCACAAGAAACTC
CGACTTCTTCCCGCTCACCGAATGTCACGGTGACGAAAGTTGACAGCGAC
GAGATACAGCTATCAGTATGCAGGCAACAGTGATTTGCTACGAGTGCTAA
CGTCATCTACCCAGGGATATATCAGAGCTTGCTGAAGGTTGTGGATATAA
TCAATTTTAATCCTACATGGTTGCCCTCGGTGGGATGTGCGATGAATGTG
GACTTCCATGGACAGTTTTTCATCATGACGATTGGGCCCATCTTGGTCAT
CCTGATGCTGATAGCGCCGTATACTTATGTCGCGCGCAAATACCACGAAT
CAAAGGAGGTTCTCGAGATCGTTCGGAACAGGCATGTATCCGCTCTCCTC
TTTATATTGTTCCTGGTGTACTCAAGCACCAGCTCTGTAGTGTTCCAGGT
GTTCAACTGCGACACCCTCGATGACGGCAATAGTTATCTTCGGGCAGATA
ACACCATCGAATGTGACGAGGTCAGACACCGAGATCTTATGATCTGGGCA
GTGTTCGCGATCTTGGTGTATCCAGTAGGGATACCTCTATTTTTTGCATT
TCTTCTGTTCAAAAGTCGTAGTGTGCTGCTTGACAAGAATCTTCGTGAAA
AACACGGGAGCATGGGGTCAATTTCGGACCTCTGGAAACCGTACAAGCCG
ATGCGGTTTTATTACGAAGTCGTCGAGTGCAGTCGGCGAACAATGCTCAT
AGGCGTGATGGCGGTAATACAAGACGATTCTGCCACCCAGATTGCGGCGG
CTCTTATGCTTTCATTTGTCTTTTTCGTCATATCGGAGGGGTTGGCACCG
TACGAGTCGCACATGGACGCCTGGGTGAACCGATTGGGGCACGCTGTTGT
GGTTTTCAGTATGTATTATGCATTGTTGTTAAAGGTTGATATTTCAAACG
ATTCTCTTCTTAGTCAGAACGTGTTTGAGGTTATGCTGATATCTATACAT
GTGCTTATGATAGTTTTAGTAATCGCTGAGGCGACTATGAAGGGGTATAC
CCTGAAAAAAGAGGCCGGTGGAGAACCTATACTAAGAAATAACCGGTATC
GGTCACAAGAAACTCCGACTTCTTCCCGCTCACCGAATGTCACGGTGACG
AAAGTTGACAGCGACGAGATACAGCTATCAGTATGCAGGCAACAGTGA
back to top