mRNA_H-elongata_contig101997.177.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101997.177.1
Unique NamemRNA_H-elongata_contig101997.177.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.520e-49
Identity = 78/134 (58.21%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:    1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIVEWTVGKVDDKFK 402
            MLNERQR V + ++N+D+DIPLLSE RE R+IEK  D IMP +EPS+  IM +V++ CIK +L+E   +K RRK IS L+RGELSEPL+R+LN RVD   +PE+ EGKV K+++NK++DE VEWTVG+VD++ +
Sbjct:    1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLR 134
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BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 6.370e-32
Identity = 59/122 (48.36%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
            MLN++Q+H  I  +N DIDIPL+SE RE R IEK  D  +P +EPSL+ +M   +++ +K+ L+E L   +R+++++ L+RGEL+ PLSR+LN RVD  ++PE +EGKV KI+  K+++EIV
Sbjct:   38 MLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
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BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.250e-31
Identity = 56/122 (45.90%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
            MLN++Q+H  I  +N D DIPL+SE RE  +IEK  D  +P +EPSL+ +M   +++ +K++L+E L   +R++++S L+RGEL+ PLS++LN RVD  ++PE +EGKV K++  K+++EIV
Sbjct:    1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
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BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.690e-30
Identity = 57/122 (46.72%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:    1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
            MLN++Q+H  I  +N D DIPLLSE  E R IE   D  +P +EPSL+ +M   +++ +K++L+E L   +R++ +S L+RGEL+ PLS++LN RVDV ++PE +EGKV K++  K+++EIV
Sbjct:   56 MLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7I4_ECTSI3.520e-4958.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7I3_ECTSI6.370e-3248.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA3_9PHAE1.250e-3145.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD72_9PHAE1.690e-3046.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101997contigH-elongata_contig101997:578..982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.6763172-CDS-H-elongata_contig101997:577..9821622929559.6763172-CDS-H-elongata_contig101997:577..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101997 578..982 -
1691679070.184772-CDS-H-elongata_contig101997:577..9821691679070.184772-CDS-H-elongata_contig101997:577..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101997 578..982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101997.177.1prot_H-elongata_contig101997.177.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101997 578..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101997.177.1

>prot_H-elongata_contig101997.177.1 ID=prot_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMI
MSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKH
VPERIEGKVFKIITNKILDEIVEWTVGKVDDKFK*
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mRNA from alignment at H-elongata_contig101997:578..982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101997.177.1 ID=mRNA_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig101997:578..982- (Himanthalia elongata Himel1 dioecious)
ATGCTGAATGAACGTCAGCGGCACGTGGCAATCACACGCCTGAACGAGGA
CATCGACATTCCGCTTTTGTCCGAGCAGCGTGAGGAGCGAATGATCGAGA
AAACGTTCGACAGCATAATGCCACACTTGGAGCCCTCTCTCGCCATGATC
ATGTCGGAAGTCTGGCTCAACTGCATCAAGCTCTCCCTGAACGAGCATCT
GCATGTGAAGCAGAGGAGGAAGCAGATCTCGGGACTGGTTCGCGGAGAGC
TGTCGGAGCCGCTTTCCAGAGAGCTCAACAGCCGCGTGGACGTTAAACAC
GTCCCCGAGAGGATCGAAGGGAAGGTGTTCAAGATAATCACCAACAAGAT
CCTCGACGAGATTGTTGAGTGGACGGTGGGCAAGGTCGACGACAAGTTTA
AGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig101997:578..982-

>mRNA_H-elongata_contig101997.177.1 ID=mRNA_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig101997:578..982- (Himanthalia elongata Himel1 dioecious)
ATGCTGAATGAACGTCAGCGGCACGTGGCAATCACACGCCTGAACGAGGA
CATCGACATTCCGCTTTTGTCCGAGCAGCGTGAGGAGCGAATGATCGAGA
AAACGTTCGACAGCATAATGCCACACTTGGAGCCCTCTCTCGCCATGATC
ATGTCGGAAGTCTGGCTCAACTGCATCAAGCTCTCCCTGAACGAGCATCT
GCATGTGAAGCAGAGGAGGAAGCAGATCTCGGGACTGGTTCGCGGAGAGC
TGTCGGAGCCGCTTTCCAGAGAGCTCAACAGCCGCGTGGACGTTAAACAC
GTCCCCGAGAGGATCGAAGGGAAGGTGTTCAAGATAATCACCAACAAGAT
CCTCGACGAGATTGTTGAGTGGACGGTGGGCAAGGTCGACGACAAGTTTA
AGTGAATGCTGAATGAACGTCAGCGGCACGTGGCAATCACACGCCTGAAC
GAGGACATCGACATTCCGCTTTTGTCCGAGCAGCGTGAGGAGCGAATGAT
CGAGAAAACGTTCGACAGCATAATGCCACACTTGGAGCCCTCTCTCGCCA
TGATCATGTCGGAAGTCTGGCTCAACTGCATCAAGCTCTCCCTGAACGAG
CATCTGCATGTGAAGCAGAGGAGGAAGCAGATCTCGGGACTGGTTCGCGG
AGAGCTGTCGGAGCCGCTTTCCAGAGAGCTCAACAGCCGCGTGGACGTTA
AACACGTCCCCGAGAGGATCGAAGGGAAGGTGTTCAAGATAATCACCAAC
AAGATCCTCGACGAGATTGTTGAGTGGACGGTGGGCAAGGTCGACGACAA
GTTTAAGTGA
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