mRNA_H-elongata_contig101997.177.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.520e-49 Identity = 78/134 (58.21%), Postives = 106/134 (79.10%), Query Frame = 1 Query: 1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIVEWTVGKVDDKFK 402
MLNERQR V + ++N+D+DIPLLSE RE R+IEK D IMP +EPS+ IM +V++ CIK +L+E +K RRK IS L+RGELSEPL+R+LN RVD +PE+ EGKV K+++NK++DE VEWTVG+VD++ +
Sbjct: 1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERLR 134
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI) HSP 1 Score: 120 bits (300), Expect = 6.370e-32 Identity = 59/122 (48.36%), Postives = 90/122 (73.77%), Query Frame = 1 Query: 1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
MLN++Q+H I +N DIDIPL+SE RE R IEK D +P +EPSL+ +M +++ +K+ L+E L +R+++++ L+RGEL+ PLSR+LN RVD ++PE +EGKV KI+ K+++EIV
Sbjct: 38 MLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.250e-31 Identity = 56/122 (45.90%), Postives = 90/122 (73.77%), Query Frame = 1 Query: 1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
MLN++Q+H I +N D DIPL+SE RE +IEK D +P +EPSL+ +M +++ +K++L+E L +R++++S L+RGEL+ PLS++LN RVD ++PE +EGKV K++ K+++EIV
Sbjct: 1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.690e-30 Identity = 57/122 (46.72%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 1 MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIMSEVWLNCIKLSLNEHLHVKQRRKQISGLVRGELSEPLSRELNSRVDVKHVPERIEGKVFKIITNKILDEIV 366
MLN++Q+H I +N D DIPLLSE E R IE D +P +EPSL+ +M +++ +K++L+E L +R++ +S L+RGEL+ PLS++LN RVDV ++PE +EGKV K++ K+++EIV
Sbjct: 56 MLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101997.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101997.177.1 >prot_H-elongata_contig101997.177.1 ID=prot_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp MLNERQRHVAITRLNEDIDIPLLSEQREERMIEKTFDSIMPHLEPSLAMIback to top mRNA from alignment at H-elongata_contig101997:578..982- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101997.177.1 ID=mRNA_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig101997:578..982- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101997:578..982- >mRNA_H-elongata_contig101997.177.1 ID=mRNA_H-elongata_contig101997.177.1|Name=mRNA_H-elongata_contig101997.177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig101997:578..982- (Himanthalia elongata Himel1 dioecious)back to top |