mRNA_H-elongata_contig101914.169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101914.169.1
Unique NamemRNA_H-elongata_contig101914.169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101914.169.1 vs. uniprot
Match: D7G8X9_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8X9_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.290e-21
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 YVRLKRHNITVFVHCEPADNFATIKTKAGKLMGIDPGQMGLFATRDMVR 147
            Y+RLKRHN TVF+HCEPADNFATIK KAGKLM I+ GQ+GLFATRD  R
Sbjct:    4 YIRLKRHNTTVFMHCEPADNFATIKAKAGKLMNIEQGQIGLFATRDKAR 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101914.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8X9_ECTSI7.290e-2179.59Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101914contigH-elongata_contig101914:1473..1664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog2880.D7G8X9
EggNOG OGs28H5T@1,2S61C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-15_004650.1
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.0278616-CDS-H-elongata_contig101914:1472..16641622929559.0278616-CDS-H-elongata_contig101914:1472..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101914 1473..1664 +
1691679069.9558384-CDS-H-elongata_contig101914:1472..16641691679069.9558384-CDS-H-elongata_contig101914:1472..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101914 1473..1664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101914.169.1prot_H-elongata_contig101914.169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101914 1473..1664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101914.169.1

>prot_H-elongata_contig101914.169.1 ID=prot_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
YVRLKRHNITVFVHCEPADNFATIKTKAGKLMGIDPGQMGLFATRDMVRM
SSTREIHADSSPM*
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mRNA from alignment at H-elongata_contig101914:1473..1664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101914.169.1 ID=mRNA_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig101914:1473..1664+ (Himanthalia elongata Himel1 dioecious)
TATGTTCGACTCAAACGGCACAATATTACGGTTTTCGTGCACTGCGAGCC
GGCGGACAACTTCGCGACCATCAAGACGAAGGCGGGGAAGCTCATGGGCA
TCGACCCTGGACAGATGGGCCTCTTCGCCACGCGCGATATGGTGAGGATG
TCGTCCACACGCGAGATACACGCTGACTCTTCACCAATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig101914:1473..1664+

>mRNA_H-elongata_contig101914.169.1 ID=mRNA_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig101914:1473..1664+ (Himanthalia elongata Himel1 dioecious)
TATGTTCGACTCAAACGGCACAATATTACGGTTTTCGTGCACTGCGAGCC
GGCGGACAACTTCGCGACCATCAAGACGAAGGCGGGGAAGCTCATGGGCA
TCGACCCTGGACAGATGGGCCTCTTCGCCACGCGCGATATGGTGAGGATG
TCGTCCACACGCGAGATACACGCTGACTCTTCACCAATGTGATATGTTCG
ACTCAAACGGCACAATATTACGGTTTTCGTGCACTGCGAGCCGGCGGACA
ACTTCGCGACCATCAAGACGAAGGCGGGGAAGCTCATGGGCATCGACCCT
GGACAGATGGGCCTCTTCGCCACGCGCGATATGGTGAGGATGTCGTCCAC
ACGCGAGATACACGCTGACTCTTCACCAATGTGA
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