Homology
BLAST of mRNA_H-elongata_contig101914.169.1 vs. uniprot
Match:
D7G8X9_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8X9_ECTSI)
HSP 1 Score: 87.0 bits (214), Expect = 7.290e-21
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1
Query: 1 YVRLKRHNITVFVHCEPADNFATIKTKAGKLMGIDPGQMGLFATRDMVR 147
Y+RLKRHN TVF+HCEPADNFATIK KAGKLM I+ GQ+GLFATRD R
Sbjct: 4 YIRLKRHNTTVFMHCEPADNFATIKAKAGKLMNIEQGQIGLFATRDKAR 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101914.169.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.29e-21 / Id = 79.59 Sequence D7G8X9_ECTSI
Match Name E-value Identity Description
D7G8X9_ECTSI 7.290e-21 79.59 Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 86.7 Seed ortholog evalue 4.4e-15 Seed eggNOG ortholog 2880.D7G8X9 EggNOG OGs 28H5T@1,2S61C@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Ec32 ortholog description Ubiquitin-related domain Ec32 ortholog Ec-15_004650.1 Exons 1 Model size 192 Cds size 192 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929559.0278616-CDS-H-elongata_contig101914:1472..1664 1622929559.0278616-CDS-H-elongata_contig101914:1472..1664 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101914 1473..1664 + 1691679069.9558384-CDS-H-elongata_contig101914:1472..1664 1691679069.9558384-CDS-H-elongata_contig101914:1472..1664 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig101914 1473..1664 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101914.169.1
>prot_H-elongata_contig101914.169.1 ID=prot_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
YVRLKRHNITVFVHCEPADNFATIKTKAGKLMGIDPGQMGLFATRDMVRM back to top mRNA from alignment at H-elongata_contig101914:1473..1664+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101914.169.1 ID=mRNA_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig101914:1473..1664+ (Himanthalia elongata Himel1 dioecious)TATGTTCGACTCAAACGGCACAATATTACGGTTTTCGTGCACTGCGAGCC
GGCGGACAACTTCGCGACCATCAAGACGAAGGCGGGGAAGCTCATGGGCA
TCGACCCTGGACAGATGGGCCTCTTCGCCACGCGCGATATGGTGAGGATG
TCGTCCACACGCGAGATACACGCTGACTCTTCACCAATGTGA back to top Coding sequence (CDS) from alignment at H-elongata_contig101914:1473..1664+
>mRNA_H-elongata_contig101914.169.1 ID=mRNA_H-elongata_contig101914.169.1|Name=mRNA_H-elongata_contig101914.169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig101914:1473..1664+ (Himanthalia elongata Himel1 dioecious) back to top