mRNA_H-elongata_contig101902.167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101902.167.1
Unique NamemRNA_H-elongata_contig101902.167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101902.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101902contigH-elongata_contig101902:1548..2345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101902.167.1prot_H-elongata_contig101902.167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101902 1548..2343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.8444774-CDS-H-elongata_contig101902:1547..16231622929558.8444774-CDS-H-elongata_contig101902:1547..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101902 1548..1623 -
1691679069.8732572-CDS-H-elongata_contig101902:1547..16231691679069.8732572-CDS-H-elongata_contig101902:1547..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101902 1548..1623 -
1622929558.8749807-CDS-H-elongata_contig101902:2077..23431622929558.8749807-CDS-H-elongata_contig101902:2077..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101902 2078..2343 -
1691679069.8845317-CDS-H-elongata_contig101902:2077..23431691679069.8845317-CDS-H-elongata_contig101902:2077..2343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101902 2078..2343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.8945098-UTR-H-elongata_contig101902:2343..23451622929558.8945098-UTR-H-elongata_contig101902:2343..2345Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101902 2344..2345 -
1691679069.9020278-UTR-H-elongata_contig101902:2343..23451691679069.9020278-UTR-H-elongata_contig101902:2343..2345Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig101902 2344..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101902.167.1

>prot_H-elongata_contig101902.167.1 ID=prot_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MGSYPWGRWIGLSYSRCLRNRAGLPLQLSPLPPPHHFRFGGFSSLVGRSS
SCSADHERDWPPCKVVFFGLGTNALNVINNNNNNTNCTRAIPTGVLQTKN
QHSIVQESFQLSSH
back to top

mRNA from alignment at H-elongata_contig101902:1548..2345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101902.167.1 ID=mRNA_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig101902:1548..2345- (Himanthalia elongata Himel1 dioecious)
TTATGGGGAGCTATCCCTGGGGACGCTGGATTGGCCTATCCTACTCGCGT
TGCTTACGCAACCGCGCCGGACTACCGCTACAACTTTCCCCCTTGCCCCC
TCCGCACCATTTTCGATTTGGCGGATTCTCGTCGCTTGTGGGACGATCAT
CATCGTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTT
TTTTTCGGGTTGGGAACCAATGCGCTGAATGTGATAAACAACAACAACAA
CAACACTAACTGTACGAGGTACTGTGCCTTCGACATTTTTGTAGTAGAAA
CTTCATGATATTTTCGACTGAGTCTGACTATTTTCACGTCGTCAGTTCTC
TTTTATTTGCAACCATTCCTATAAAAGTGGTGTGGATGTTCGGAGGGTGG
AATTAGTTCATACAGTATAGTAGTATTTTTTAGGAAAAAGAGTGTGGGGG
GAGGTAGGCCATCGGTGAAGAATTCAAATACTGCGCACAGTGCACAGTAC
CTATGGAAGGACTGAATAACTATTTCTAACAATCCCCGTGGTCGAATGTT
TTTCATAAGAAAACCATGTCAAGTCGGGTCGTCTTGGGAAGCTTCTTTGT
CCCGCTTTACCCCGGATCTATCCGGCCGAGAAATAGGGTACAGTGGCCGT
CGGCGCACACTCTCTTACACAACATTCCAATTTCTCCCCTAATACTCTCA
CTCCGCCGCCCATTACTCGTAGAGCTATACCAACGGGTGTATTGCAGACC
AAGAATCAGCATTCTATCGTGCAAGAGAGTTTTCAGCTCAGCAGTCAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig101902:1548..2345-

>mRNA_H-elongata_contig101902.167.1 ID=mRNA_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig101902:1548..2345- (Himanthalia elongata Himel1 dioecious)
ATGGGGAGCTATCCCTGGGGACGCTGGATTGGCCTATCCTACTCGCGTTG
CTTACGCAACCGCGCCGGACTACCGCTACAACTTTCCCCCTTGCCCCCTC
CGCACCATTTTCGATTTGGCGGATTCTCGTCGCTTGTGGGACGATCATCA
TCGTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTTTT
TTTCGGGTTGGGAACCAATGCGCTGAATGTGATAAACAACAACAACAACA
ACACTAACTGTACGAGATGGGGAGCTATCCCTGGGGACGCTGGATTGGCC
TATCCTACTCGCGTTGCTTACGCAACCGCGCCGGACTACCGCTACAACTT
TCCCCCTTGCCCCCTCCGCACCATTTTCGATTTGGCGGATTCTCGTCGCT
TGTGGGACGATCATCATCGTGTTCAGCAGACCACGAGCGGGATTGGCCAC
CGTGTAAAGTAGTTTTTTTCGGGTTGGGAACCAATGCGCTGAATGTGATA
AACAACAACAACAACAACACTAACTGTACGAGAGCTATACCAACGGGTGT
ATTGCAGACCAAGAATCAGCATTCTATCGTGCAAGAGAGTTTTCAGCTCA
GCAGTCATAGCTATACCAACGGGTGTATTGCAGACCAAGAATCAGCATTC
TATCGTGCAAGAGAGTTTTCAGCTCAGCAGTCAT
back to top