Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 346 |
| Cds size | 342 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929558.8444774-CDS-H-elongata_contig101902:1547..1623 | 1622929558.8444774-CDS-H-elongata_contig101902:1547..1623 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101902 1548..1623 - |
| 1691679069.8732572-CDS-H-elongata_contig101902:1547..1623 | 1691679069.8732572-CDS-H-elongata_contig101902:1547..1623 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101902 1548..1623 - |
| 1622929558.8749807-CDS-H-elongata_contig101902:2077..2343 | 1622929558.8749807-CDS-H-elongata_contig101902:2077..2343 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101902 2078..2343 - |
| 1691679069.8845317-CDS-H-elongata_contig101902:2077..2343 | 1691679069.8845317-CDS-H-elongata_contig101902:2077..2343 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig101902 2078..2343 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929558.8945098-UTR-H-elongata_contig101902:2343..2345 | 1622929558.8945098-UTR-H-elongata_contig101902:2343..2345 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig101902 2344..2345 - |
| 1691679069.9020278-UTR-H-elongata_contig101902:2343..2345 | 1691679069.9020278-UTR-H-elongata_contig101902:2343..2345 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig101902 2344..2345 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101902.167.1 >prot_H-elongata_contig101902.167.1 ID=prot_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MGSYPWGRWIGLSYSRCLRNRAGLPLQLSPLPPPHHFRFGGFSSLVGRSS
SCSADHERDWPPCKVVFFGLGTNALNVINNNNNNTNCTRAIPTGVLQTKN
QHSIVQESFQLSSH back to topmRNA from alignment at H-elongata_contig101902:1548..2345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig101902.167.1 ID=mRNA_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig101902:1548..2345- (Himanthalia elongata Himel1 dioecious)
TTATGGGGAGCTATCCCTGGGGACGCTGGATTGGCCTATCCTACTCGCGT
TGCTTACGCAACCGCGCCGGACTACCGCTACAACTTTCCCCCTTGCCCCC
TCCGCACCATTTTCGATTTGGCGGATTCTCGTCGCTTGTGGGACGATCAT
CATCGTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTT
TTTTTCGGGTTGGGAACCAATGCGCTGAATGTGATAAACAACAACAACAA
CAACACTAACTGTACGAGGTACTGTGCCTTCGACATTTTTGTAGTAGAAA
CTTCATGATATTTTCGACTGAGTCTGACTATTTTCACGTCGTCAGTTCTC
TTTTATTTGCAACCATTCCTATAAAAGTGGTGTGGATGTTCGGAGGGTGG
AATTAGTTCATACAGTATAGTAGTATTTTTTAGGAAAAAGAGTGTGGGGG
GAGGTAGGCCATCGGTGAAGAATTCAAATACTGCGCACAGTGCACAGTAC
CTATGGAAGGACTGAATAACTATTTCTAACAATCCCCGTGGTCGAATGTT
TTTCATAAGAAAACCATGTCAAGTCGGGTCGTCTTGGGAAGCTTCTTTGT
CCCGCTTTACCCCGGATCTATCCGGCCGAGAAATAGGGTACAGTGGCCGT
CGGCGCACACTCTCTTACACAACATTCCAATTTCTCCCCTAATACTCTCA
CTCCGCCGCCCATTACTCGTAGAGCTATACCAACGGGTGTATTGCAGACC
AAGAATCAGCATTCTATCGTGCAAGAGAGTTTTCAGCTCAGCAGTCAT back to topCoding sequence (CDS) from alignment at H-elongata_contig101902:1548..2345- >mRNA_H-elongata_contig101902.167.1 ID=mRNA_H-elongata_contig101902.167.1|Name=mRNA_H-elongata_contig101902.167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig101902:1548..2345- (Himanthalia elongata Himel1 dioecious)
ATGGGGAGCTATCCCTGGGGACGCTGGATTGGCCTATCCTACTCGCGTTG
CTTACGCAACCGCGCCGGACTACCGCTACAACTTTCCCCCTTGCCCCCTC
CGCACCATTTTCGATTTGGCGGATTCTCGTCGCTTGTGGGACGATCATCA
TCGTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTTTT
TTTCGGGTTGGGAACCAATGCGCTGAATGTGATAAACAACAACAACAACA
ACACTAACTGTACGAGATGGGGAGCTATCCCTGGGGACGCTGGATTGGCC
TATCCTACTCGCGTTGCTTACGCAACCGCGCCGGACTACCGCTACAACTT
TCCCCCTTGCCCCCTCCGCACCATTTTCGATTTGGCGGATTCTCGTCGCT
TGTGGGACGATCATCATCGTGTTCAGCAGACCACGAGCGGGATTGGCCAC
CGTGTAAAGTAGTTTTTTTCGGGTTGGGAACCAATGCGCTGAATGTGATA
AACAACAACAACAACAACACTAACTGTACGAGAGCTATACCAACGGGTGT
ATTGCAGACCAAGAATCAGCATTCTATCGTGCAAGAGAGTTTTCAGCTCA
GCAGTCATAGCTATACCAACGGGTGTATTGCAGACCAAGAATCAGCATTC
TATCGTGCAAGAGAGTTTTCAGCTCAGCAGTCAT back to top
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