mRNA_H-elongata_contig10190.166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10190.166.1
Unique NamemRNA_H-elongata_contig10190.166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10190.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10190contigH-elongata_contig10190:3634..6862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003010.1
Hectar predicted targeting categoryother localisation
Exons4
Model size2092
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10190.166.1prot_H-elongata_contig10190.166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10190 3823..5986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.6975055-UTR-H-elongata_contig10190:3633..36941622929558.6975055-UTR-H-elongata_contig10190:3633..3694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 3634..3694 +
1691679069.7680337-UTR-H-elongata_contig10190:3633..36941691679069.7680337-UTR-H-elongata_contig10190:3633..3694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 3634..3694 +
1622929558.718654-UTR-H-elongata_contig10190:3792..38221622929558.718654-UTR-H-elongata_contig10190:3792..3822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 3793..3822 +
1691679069.776137-UTR-H-elongata_contig10190:3792..38221691679069.776137-UTR-H-elongata_contig10190:3792..3822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 3793..3822 +
1622929558.784276-UTR-H-elongata_contig10190:5986..68621622929558.784276-UTR-H-elongata_contig10190:5986..6862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 5987..6862 +
1691679069.8432353-UTR-H-elongata_contig10190:5986..68621691679069.8432353-UTR-H-elongata_contig10190:5986..6862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10190 5987..6862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.733043-CDS-H-elongata_contig10190:3822..40811622929558.733043-CDS-H-elongata_contig10190:3822..4081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 3823..4081 +
1691679069.783499-CDS-H-elongata_contig10190:3822..40811691679069.783499-CDS-H-elongata_contig10190:3822..4081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 3823..4081 +
1622929558.747053-CDS-H-elongata_contig10190:4606..52461622929558.747053-CDS-H-elongata_contig10190:4606..5246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 4607..5246 +
1691679069.7991068-CDS-H-elongata_contig10190:4606..52461691679069.7991068-CDS-H-elongata_contig10190:4606..5246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 4607..5246 +
1622929558.7651033-CDS-H-elongata_contig10190:5760..59861622929558.7651033-CDS-H-elongata_contig10190:5760..5986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 5761..5986 +
1691679069.8106203-CDS-H-elongata_contig10190:5760..59861691679069.8106203-CDS-H-elongata_contig10190:5760..5986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10190 5761..5986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10190.166.1

>prot_H-elongata_contig10190.166.1 ID=prot_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp
MTAVSGTSSFATSCVSQINACFEDSTCSACLSGWKGTPLASECEGQYSSV
TNGDACADLGASSCCGLGGEAIADSCVVSEIFVQYWGCYMSESSCVIEDM
PCYTGLTTISPSRLPASSMPVVSPSPSPVPSGTASPLSPLLPASSMPVVS
QSPSPVPSGTASPLYPLLPTLQPRSSETPTSAPTLTASFSDSGISTSARI
LGETSAPTASPTVVDLVGAQCANQTSACLNDEVCQGCLADSEILAAVAWS
QDDFSECEIGYLDSPSDAGVCEVAGAMYCCSNDSSEAGCVANEASLDYWR
CVFDSILCSMDDVTCMGGIGGSYRSDDETFLTDDGADAEGAASSHATKRW
RGPRIQLVWLFTVFLAGIAVAAPA*
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mRNA from alignment at H-elongata_contig10190:3634..6862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10190.166.1 ID=mRNA_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3229bp|location=Sequence derived from alignment at H-elongata_contig10190:3634..6862+ (Himanthalia elongata Himel1 dioecious)
AGAACCCGCCATATCGGAGGATCTGGTGGAACAGCGAGAGAACAGGGTTG
GAATCTTCTCCCATCTTCTCCGCCGAAGCCAATTTTAGCGTTTCGGGGTT
CGGCACAAACTATCATGCTCTCTCGGATACTCTCATCGGTCATCCTCGGC
TTGCACCTGCACGCCGTGGTGGCGTTATCTTCATCGACTATGACCGCTGT
GAGTGGAACTTCCTCTTTCGCTACTTCATGCGTGAGCCAGATAAATGCCT
GCTTCGAGGACTCGACGTGCTCGGCGTGCCTCTCGGGATGGAAAGGGACC
CCCCTTGCCTCTGAGTGCGAGGGCCAGTATTCCTCTGTCACCAACGGGGA
CGCTTGCGCGGACCTCGGAGCGTCTTCCTGTTGTGGCCTTGGAGGCGAAG
CAATCGCGGACAGCTGCGTGGTCAGCGAGATTTTCGTTCAATACTGGGGT
GAGCTATGGTTGTCGTAGGATCAGTCGTGATCTTTCTCTTCTCGTGTATT
GGAAGAACGTCAGTGGGTCATTCGGGAGCGATGGACGACCCTTAGGCTTT
ACCGGCGCGGGCAGTCCAATTGTTTCGTGGGGGTTCTTGCAAAAACGACC
GAAGCTATAGATGACCTCTAGTCTCAAGCGCAATCGGAGGAGCGATATTT
TCCGACAGGACAAGTGCGTCAAGCTTAGGAAACGGCCGGTAGGGGGGGTT
GCTTCAAGGTTTCTTATTCATGAAGGGGCCATGTTACGGCGACAAAACGT
AAATAGTAAAATCCCCTTTGTGTACGGCGATAATATATTCCATACGGGAA
TGCGGCGATTGGATCTCCGAAAAGTGACGAATTTTCATATTCCCCGCCCA
AAAGCGGGAGTAATTATGTGACGCCCCCTCCCCCCCCGTCTATCTTTAGA
TTGATATGCCTCTCTAATTCATCCTTCCCCCCCCCCTCTCGATCTTACCG
CAACCCTCGCGCCGGCCGTCCAGGGTGCTACATGAGCGAATCAAGTTGCG
TCATTGAAGATATGCCGTGCTATACCGGCCTGACGACCATCTCGCCGTCT
CGATTGCCCGCGTCGTCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGT
CCCTTCTGGTACGGCTTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGA
TGCCCGTCGTCTCGCAATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCG
CCCCTCTACCCCCTCCTTCCCACGTTACAGCCACGCTCGTCCGAGACCCC
GACCTCGGCGCCCACTCTTACAGCATCCTTCTCGGATTCCGGGATTTCGA
CAAGCGCGCGTATTCTGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACG
GTCGTGGATCTCGTCGGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCT
CAATGACGAAGTGTGCCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGG
CGGTCGCCTGGTCCCAGGACGATTTCTCGGAGTGCGAAATCGGTTACCTC
GACAGCCCTTCCGACGCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTG
CTGCTCGAACGACTCTTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCT
TGGACTACTGGAGGTGGGTCTTGAAGATATGTTACTTCTCCCCCAAGCTG
TACGCGCCGTGTTTTATTTTCGTCGGTTGACCCACCATTTTCGGAGGAAA
CATCAGCCATCGCTTATTTTTAACCGCTTTTCCGATAAACCCCAATGTAG
GAATACTATAGACTGAAGACTGAAGCTATACTTGTTTTATCAGATTGTGT
ACATTGAGAGCTCAGCTCCATCGAGAATCGGTGCGCGTCGTGATCCTTAG
ATTTTTTTTGTAGGGGATTGTGTTTTTCGTCGCGAGGTGGCACACCACCC
TGTCTCCCTCGACTACACTATCGGATCTCGGTCGTTATCCCGCAACCGTC
GAGAGATTTCAGACATTTTGTGTTAACTTAATTGTTTACTCCCAAGGAGT
CACATACCCCCGTTCTCTCGTCCTCGCGCACCCAAGCCTGGCCGGAAGCG
CGGGGTGTTTCAGACGAGGAGCGTGTCGTCCCTTTTGAGCCCTGGCCTCC
CCCATTTGAATCCTCGGCCTCGCACAGGTGTGTCTTCGACTCTATATTGT
GCTCGATGGACGACGTCACCTGCATGGGAGGCATCGGAGGCTCTTACCGC
AGCGATGATGAGACGTTCCTAACTGATGACGGCGCGGACGCGGAGGGGGC
CGCGAGTAGCCACGCAACAAAAAGGTGGCGCGGGCCGAGAATCCAGTTGG
TCTGGCTGTTCACAGTGTTCCTGGCTGGGATAGCTGTCGCTGCCCCCGCC
TAGGGTGTATGTCTTCTATATTAATACATCTACCATTTTAGAAGCAGCGC
CGGCTTTGGCCGCGCAGCTCATTTTCATGTAGCGAGCGCACGTTTGCACT
CGATGTTTGTTTGAGGCATGTTTGTCATGTAGAGGGTTTCGATCATGCAG
GCGTGTGCAACAGCTTACTGTTTTTTCTCGGGATGCCCCGGTTATTGGTT
GGGCAGGGATGATCGCCATGTCTTCTAAGGGATTGTTGTTTTTAGAAAAC
GTGCGCCAGAACCGGCAGTTACGGGGAGGCTAGGAAGTGAGGCTAGCGAG
AAGAAGCCCCACATTGCGCGGGCGATTACTTTTTGGCCTGTCGTAGAATC
GAGGCTCGCCTACTTCCGCTCAATTTATTTTCACACAAAATGTTAATTTA
AATACGGGTGGTGTCAAACTTGCGTACCGCATCTGCTTCAAAAAGTAGAA
AACAATACCCTATGGGTGCGAATCGTAGAGAATGCTCGCTTCGCCTTTGG
GACTTTGTTCGCACCGATGACAGCGAAGTCACGAAATGACGCCCGATGCA
TGTCGTACTAAATACTGGAGGGGAGGGGGGGGATGTCGTCCGCTCAGTCT
CAAAAGGGCTAGGAAAGCAGTAGATCGATAGAATCACGAGGATGAACAAG
CCCGGCATTGCTGTGCACGATGATACCCCCTTTTATATTTTTGCATTAGA
CTGCGAGTTCTCAATGTAGCGCCATTAAAGCTAGGCAATACGGTTGACCT
CGTCTGGTGACGCAACATGTCTTCATCCTGGGAACGGGGACGGCTCGATA
AGCTGGTTCGACCTTGGGGTACATGGTGATTGGGTTTGTTCCTCCAGCAG
CCTTAACTTTACTAACGCCAACCCGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig10190:3634..6862+

>mRNA_H-elongata_contig10190.166.1 ID=mRNA_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at H-elongata_contig10190:3634..6862+ (Himanthalia elongata Himel1 dioecious)
ATGACCGCTGTGAGTGGAACTTCCTCTTTCGCTACTTCATGCGTGAGCCA
GATAAATGCCTGCTTCGAGGACTCGACGTGCTCGGCGTGCCTCTCGGGAT
GGAAAGGGACCCCCCTTGCCTCTGAGTGCGAGGGCCAGTATTCCTCTGTC
ACCAACGGGGACGCTTGCGCGGACCTCGGAGCGTCTTCCTGTTGTGGCCT
TGGAGGCGAAGCAATCGCGGACAGCTGCGTGGTCAGCGAGATTTTCGTTC
AATACTGGGATGACCGCTGTGAGTGGAACTTCCTCTTTCGCTACTTCATG
CGTGAGCCAGATAAATGCCTGCTTCGAGGACTCGACGTGCTCGGCGTGCC
TCTCGGGATGGAAAGGGACCCCCCTTGCCTCTGAGTGCGAGGGCCAGTAT
TCCTCTGTCACCAACGGGGACGCTTGCGCGGACCTCGGAGCGTCTTCCTG
TTGTGGCCTTGGAGGCGAAGCAATCGCGGACAGCTGCGTGGTCAGCGAGA
TTTTCGTTCAATACTGGGGGTGCTACATGAGCGAATCAAGTTGCGTCATT
GAAGATATGCCGTGCTATACCGGCCTGACGACCATCTCGCCGTCTCGATT
GCCCGCGTCGTCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGTCCCTT
CTGGTACGGCTTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGATGCCC
GTCGTCTCGCAATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCGCCCCT
CTACCCCCTCCTTCCCACGTTACAGCCACGCTCGTCCGAGACCCCGACCT
CGGCGCCCACTCTTACAGCATCCTTCTCGGATTCCGGGATTTCGACAAGC
GCGCGTATTCTGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACGGTCGT
GGATCTCGTCGGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCTCAATG
ACGAAGTGTGCCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGGCGGTC
GCCTGGTCCCAGGACGATTTCTCGGAGTGCGAAATCGGTTACCTCGACAG
CCCTTCCGACGCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTGCTGCT
CGAACGACTCTTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCTTGGAC
TACTGGAGGGTGCTACATGAGCGAATCAAGTTGCGTCATTGAAGATATGC
CGTGCTATACCGGCCTGACGACCATCTCGCCGTCTCGATTGCCCGCGTCG
TCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGTCCCTTCTGGTACGGC
TTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGATGCCCGTCGTCTCGC
AATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCGCCCCTCTACCCCCTC
CTTCCCACGTTACAGCCACGCTCGTCCGAGACCCCGACCTCGGCGCCCAC
TCTTACAGCATCCTTCTCGGATTCCGGGATTTCGACAAGCGCGCGTATTC
TGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACGGTCGTGGATCTCGTC
GGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCTCAATGACGAAGTGTG
CCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGGCGGTCGCCTGGTCCC
AGGACGATTTCTCGGAGTGCGAAATCGGTTACCTCGACAGCCCTTCCGAC
GCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTGCTGCTCGAACGACTC
TTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCTTGGACTACTGGAGGT
GTGTCTTCGACTCTATATTGTGCTCGATGGACGACGTCACCTGCATGGGA
GGCATCGGAGGCTCTTACCGCAGCGATGATGAGACGTTCCTAACTGATGA
CGGCGCGGACGCGGAGGGGGCCGCGAGTAGCCACGCAACAAAAAGGTGGC
GCGGGCCGAGAATCCAGTTGGTCTGGCTGTTCACAGTGTTCCTGGCTGGG
ATAGCTGTCGCTGCCCCCGCCTAGGTGTGTCTTCGACTCTATATTGTGCT
CGATGGACGACGTCACCTGCATGGGAGGCATCGGAGGCTCTTACCGCAGC
GATGATGAGACGTTCCTAACTGATGACGGCGCGGACGCGGAGGGGGCCGC
GAGTAGCCACGCAACAAAAAGGTGGCGCGGGCCGAGAATCCAGTTGGTCT
GGCTGTTCACAGTGTTCCTGGCTGGGATAGCTGTCGCTGCCCCCGCCTAG
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