Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-15_003010.1 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 2092 |
Cds size | 1125 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929558.6975055-UTR-H-elongata_contig10190:3633..3694 | 1622929558.6975055-UTR-H-elongata_contig10190:3633..3694 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 3634..3694 + |
1691679069.7680337-UTR-H-elongata_contig10190:3633..3694 | 1691679069.7680337-UTR-H-elongata_contig10190:3633..3694 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 3634..3694 + |
1622929558.718654-UTR-H-elongata_contig10190:3792..3822 | 1622929558.718654-UTR-H-elongata_contig10190:3792..3822 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 3793..3822 + |
1691679069.776137-UTR-H-elongata_contig10190:3792..3822 | 1691679069.776137-UTR-H-elongata_contig10190:3792..3822 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 3793..3822 + |
1622929558.784276-UTR-H-elongata_contig10190:5986..6862 | 1622929558.784276-UTR-H-elongata_contig10190:5986..6862 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 5987..6862 + |
1691679069.8432353-UTR-H-elongata_contig10190:5986..6862 | 1691679069.8432353-UTR-H-elongata_contig10190:5986..6862 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10190 5987..6862 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622929558.733043-CDS-H-elongata_contig10190:3822..4081 | 1622929558.733043-CDS-H-elongata_contig10190:3822..4081 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 3823..4081 + |
1691679069.783499-CDS-H-elongata_contig10190:3822..4081 | 1691679069.783499-CDS-H-elongata_contig10190:3822..4081 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 3823..4081 + |
1622929558.747053-CDS-H-elongata_contig10190:4606..5246 | 1622929558.747053-CDS-H-elongata_contig10190:4606..5246 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 4607..5246 + |
1691679069.7991068-CDS-H-elongata_contig10190:4606..5246 | 1691679069.7991068-CDS-H-elongata_contig10190:4606..5246 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 4607..5246 + |
1622929558.7651033-CDS-H-elongata_contig10190:5760..5986 | 1622929558.7651033-CDS-H-elongata_contig10190:5760..5986 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 5761..5986 + |
1691679069.8106203-CDS-H-elongata_contig10190:5760..5986 | 1691679069.8106203-CDS-H-elongata_contig10190:5760..5986 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10190 5761..5986 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10190.166.1 >prot_H-elongata_contig10190.166.1 ID=prot_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp
MTAVSGTSSFATSCVSQINACFEDSTCSACLSGWKGTPLASECEGQYSSV TNGDACADLGASSCCGLGGEAIADSCVVSEIFVQYWGCYMSESSCVIEDM PCYTGLTTISPSRLPASSMPVVSPSPSPVPSGTASPLSPLLPASSMPVVS QSPSPVPSGTASPLYPLLPTLQPRSSETPTSAPTLTASFSDSGISTSARI LGETSAPTASPTVVDLVGAQCANQTSACLNDEVCQGCLADSEILAAVAWS QDDFSECEIGYLDSPSDAGVCEVAGAMYCCSNDSSEAGCVANEASLDYWR CVFDSILCSMDDVTCMGGIGGSYRSDDETFLTDDGADAEGAASSHATKRW RGPRIQLVWLFTVFLAGIAVAAPA* back to topmRNA from alignment at H-elongata_contig10190:3634..6862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10190.166.1 ID=mRNA_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3229bp|location=Sequence derived from alignment at H-elongata_contig10190:3634..6862+ (Himanthalia elongata Himel1 dioecious) AGAACCCGCCATATCGGAGGATCTGGTGGAACAGCGAGAGAACAGGGTTG
GAATCTTCTCCCATCTTCTCCGCCGAAGCCAATTTTAGCGTTTCGGGGTT
CGGCACAAACTATCATGCTCTCTCGGATACTCTCATCGGTCATCCTCGGC
TTGCACCTGCACGCCGTGGTGGCGTTATCTTCATCGACTATGACCGCTGT
GAGTGGAACTTCCTCTTTCGCTACTTCATGCGTGAGCCAGATAAATGCCT
GCTTCGAGGACTCGACGTGCTCGGCGTGCCTCTCGGGATGGAAAGGGACC
CCCCTTGCCTCTGAGTGCGAGGGCCAGTATTCCTCTGTCACCAACGGGGA
CGCTTGCGCGGACCTCGGAGCGTCTTCCTGTTGTGGCCTTGGAGGCGAAG
CAATCGCGGACAGCTGCGTGGTCAGCGAGATTTTCGTTCAATACTGGGGT
GAGCTATGGTTGTCGTAGGATCAGTCGTGATCTTTCTCTTCTCGTGTATT
GGAAGAACGTCAGTGGGTCATTCGGGAGCGATGGACGACCCTTAGGCTTT
ACCGGCGCGGGCAGTCCAATTGTTTCGTGGGGGTTCTTGCAAAAACGACC
GAAGCTATAGATGACCTCTAGTCTCAAGCGCAATCGGAGGAGCGATATTT
TCCGACAGGACAAGTGCGTCAAGCTTAGGAAACGGCCGGTAGGGGGGGTT
GCTTCAAGGTTTCTTATTCATGAAGGGGCCATGTTACGGCGACAAAACGT
AAATAGTAAAATCCCCTTTGTGTACGGCGATAATATATTCCATACGGGAA
TGCGGCGATTGGATCTCCGAAAAGTGACGAATTTTCATATTCCCCGCCCA
AAAGCGGGAGTAATTATGTGACGCCCCCTCCCCCCCCGTCTATCTTTAGA
TTGATATGCCTCTCTAATTCATCCTTCCCCCCCCCCTCTCGATCTTACCG
CAACCCTCGCGCCGGCCGTCCAGGGTGCTACATGAGCGAATCAAGTTGCG
TCATTGAAGATATGCCGTGCTATACCGGCCTGACGACCATCTCGCCGTCT
CGATTGCCCGCGTCGTCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGT
CCCTTCTGGTACGGCTTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGA
TGCCCGTCGTCTCGCAATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCG
CCCCTCTACCCCCTCCTTCCCACGTTACAGCCACGCTCGTCCGAGACCCC
GACCTCGGCGCCCACTCTTACAGCATCCTTCTCGGATTCCGGGATTTCGA
CAAGCGCGCGTATTCTGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACG
GTCGTGGATCTCGTCGGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCT
CAATGACGAAGTGTGCCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGG
CGGTCGCCTGGTCCCAGGACGATTTCTCGGAGTGCGAAATCGGTTACCTC
GACAGCCCTTCCGACGCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTG
CTGCTCGAACGACTCTTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCT
TGGACTACTGGAGGTGGGTCTTGAAGATATGTTACTTCTCCCCCAAGCTG
TACGCGCCGTGTTTTATTTTCGTCGGTTGACCCACCATTTTCGGAGGAAA
CATCAGCCATCGCTTATTTTTAACCGCTTTTCCGATAAACCCCAATGTAG
GAATACTATAGACTGAAGACTGAAGCTATACTTGTTTTATCAGATTGTGT
ACATTGAGAGCTCAGCTCCATCGAGAATCGGTGCGCGTCGTGATCCTTAG
ATTTTTTTTGTAGGGGATTGTGTTTTTCGTCGCGAGGTGGCACACCACCC
TGTCTCCCTCGACTACACTATCGGATCTCGGTCGTTATCCCGCAACCGTC
GAGAGATTTCAGACATTTTGTGTTAACTTAATTGTTTACTCCCAAGGAGT
CACATACCCCCGTTCTCTCGTCCTCGCGCACCCAAGCCTGGCCGGAAGCG
CGGGGTGTTTCAGACGAGGAGCGTGTCGTCCCTTTTGAGCCCTGGCCTCC
CCCATTTGAATCCTCGGCCTCGCACAGGTGTGTCTTCGACTCTATATTGT
GCTCGATGGACGACGTCACCTGCATGGGAGGCATCGGAGGCTCTTACCGC
AGCGATGATGAGACGTTCCTAACTGATGACGGCGCGGACGCGGAGGGGGC
CGCGAGTAGCCACGCAACAAAAAGGTGGCGCGGGCCGAGAATCCAGTTGG
TCTGGCTGTTCACAGTGTTCCTGGCTGGGATAGCTGTCGCTGCCCCCGCC
TAGGGTGTATGTCTTCTATATTAATACATCTACCATTTTAGAAGCAGCGC
CGGCTTTGGCCGCGCAGCTCATTTTCATGTAGCGAGCGCACGTTTGCACT
CGATGTTTGTTTGAGGCATGTTTGTCATGTAGAGGGTTTCGATCATGCAG
GCGTGTGCAACAGCTTACTGTTTTTTCTCGGGATGCCCCGGTTATTGGTT
GGGCAGGGATGATCGCCATGTCTTCTAAGGGATTGTTGTTTTTAGAAAAC
GTGCGCCAGAACCGGCAGTTACGGGGAGGCTAGGAAGTGAGGCTAGCGAG
AAGAAGCCCCACATTGCGCGGGCGATTACTTTTTGGCCTGTCGTAGAATC
GAGGCTCGCCTACTTCCGCTCAATTTATTTTCACACAAAATGTTAATTTA
AATACGGGTGGTGTCAAACTTGCGTACCGCATCTGCTTCAAAAAGTAGAA
AACAATACCCTATGGGTGCGAATCGTAGAGAATGCTCGCTTCGCCTTTGG
GACTTTGTTCGCACCGATGACAGCGAAGTCACGAAATGACGCCCGATGCA
TGTCGTACTAAATACTGGAGGGGAGGGGGGGGATGTCGTCCGCTCAGTCT
CAAAAGGGCTAGGAAAGCAGTAGATCGATAGAATCACGAGGATGAACAAG
CCCGGCATTGCTGTGCACGATGATACCCCCTTTTATATTTTTGCATTAGA
CTGCGAGTTCTCAATGTAGCGCCATTAAAGCTAGGCAATACGGTTGACCT
CGTCTGGTGACGCAACATGTCTTCATCCTGGGAACGGGGACGGCTCGATA
AGCTGGTTCGACCTTGGGGTACATGGTGATTGGGTTTGTTCCTCCAGCAG
CCTTAACTTTACTAACGCCAACCCGCAAC back to topCoding sequence (CDS) from alignment at H-elongata_contig10190:3634..6862+ >mRNA_H-elongata_contig10190.166.1 ID=mRNA_H-elongata_contig10190.166.1|Name=mRNA_H-elongata_contig10190.166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at H-elongata_contig10190:3634..6862+ (Himanthalia elongata Himel1 dioecious) ATGACCGCTGTGAGTGGAACTTCCTCTTTCGCTACTTCATGCGTGAGCCA GATAAATGCCTGCTTCGAGGACTCGACGTGCTCGGCGTGCCTCTCGGGAT GGAAAGGGACCCCCCTTGCCTCTGAGTGCGAGGGCCAGTATTCCTCTGTC ACCAACGGGGACGCTTGCGCGGACCTCGGAGCGTCTTCCTGTTGTGGCCT TGGAGGCGAAGCAATCGCGGACAGCTGCGTGGTCAGCGAGATTTTCGTTC AATACTGGGATGACCGCTGTGAGTGGAACTTCCTCTTTCGCTACTTCATG CGTGAGCCAGATAAATGCCTGCTTCGAGGACTCGACGTGCTCGGCGTGCC TCTCGGGATGGAAAGGGACCCCCCTTGCCTCTGAGTGCGAGGGCCAGTAT TCCTCTGTCACCAACGGGGACGCTTGCGCGGACCTCGGAGCGTCTTCCTG TTGTGGCCTTGGAGGCGAAGCAATCGCGGACAGCTGCGTGGTCAGCGAGA TTTTCGTTCAATACTGGGGGTGCTACATGAGCGAATCAAGTTGCGTCATT GAAGATATGCCGTGCTATACCGGCCTGACGACCATCTCGCCGTCTCGATT GCCCGCGTCGTCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGTCCCTT CTGGTACGGCTTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGATGCCC GTCGTCTCGCAATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCGCCCCT CTACCCCCTCCTTCCCACGTTACAGCCACGCTCGTCCGAGACCCCGACCT CGGCGCCCACTCTTACAGCATCCTTCTCGGATTCCGGGATTTCGACAAGC GCGCGTATTCTGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACGGTCGT GGATCTCGTCGGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCTCAATG ACGAAGTGTGCCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGGCGGTC GCCTGGTCCCAGGACGATTTCTCGGAGTGCGAAATCGGTTACCTCGACAG CCCTTCCGACGCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTGCTGCT CGAACGACTCTTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCTTGGAC TACTGGAGGGTGCTACATGAGCGAATCAAGTTGCGTCATTGAAGATATGC CGTGCTATACCGGCCTGACGACCATCTCGCCGTCTCGATTGCCCGCGTCG TCAATGCCCGTCGTCTCGCCATCACCGTCCCCTGTCCCTTCTGGTACGGC TTCGCCCCTCTCCCCTCTCCTCCCCGCGTCGTCGATGCCCGTCGTCTCGC AATCGCCGTCCCCTGTCCCGTCTGGTACGGCTTCGCCCCTCTACCCCCTC CTTCCCACGTTACAGCCACGCTCGTCCGAGACCCCGACCTCGGCGCCCAC TCTTACAGCATCCTTCTCGGATTCCGGGATTTCGACAAGCGCGCGTATTC TGGGCGAGACGAGTGCCCCGACAGCCTCGCCGACGGTCGTGGATCTCGTC GGCGCCCAGTGCGCGAATCAGACCAGCGCTTGTCTCAATGACGAAGTGTG CCAGGGCTGCCTGGCTGATAGTGAAATCCTGGCGGCGGTCGCCTGGTCCC AGGACGATTTCTCGGAGTGCGAAATCGGTTACCTCGACAGCCCTTCCGAC GCCGGTGTTTGCGAGGTCGCCGGGGCCATGTACTGCTGCTCGAACGACTC TTCCGAGGCAGGATGTGTAGCCAATGAAGCTTCCTTGGACTACTGGAGGT GTGTCTTCGACTCTATATTGTGCTCGATGGACGACGTCACCTGCATGGGA GGCATCGGAGGCTCTTACCGCAGCGATGATGAGACGTTCCTAACTGATGA CGGCGCGGACGCGGAGGGGGCCGCGAGTAGCCACGCAACAAAAAGGTGGC GCGGGCCGAGAATCCAGTTGGTCTGGCTGTTCACAGTGTTCCTGGCTGGG ATAGCTGTCGCTGCCCCCGCCTAGGTGTGTCTTCGACTCTATATTGTGCT CGATGGACGACGTCACCTGCATGGGAGGCATCGGAGGCTCTTACCGCAGC GATGATGAGACGTTCCTAACTGATGACGGCGCGGACGCGGAGGGGGCCGC GAGTAGCCACGCAACAAAAAGGTGGCGCGGGCCGAGAATCCAGTTGGTCT GGCTGTTCACAGTGTTCCTGGCTGGGATAGCTGTCGCTGCCCCCGCCTAG back to top
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