mRNA_H-elongata_contig101863.161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101863.161.1
Unique NamemRNA_H-elongata_contig101863.161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: D7FQG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG8_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-17
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 QAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            +AVE  G++NWR VA  V TR HIQCQQRWKKALRPGLVKGAW +EED+ L
Sbjct:  299 EAVEELGEKNWREVADHVRTRNHIQCQQRWKKALRPGLVKGAWGVEEDKKL 349
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-17
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 MEWQAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            +E  AVE  G++NWR VA  V TR HIQCQQRWKKALRPGLVKGAW +EED+ L
Sbjct:  382 VEKGAVEELGEKNWRQVADHVRTRNHIQCQQRWKKALRPGLVKGAWGVEEDKKL 435
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.860e-14
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   13 AVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            AV  YG+ NW+ +A+ VGTR H+QC QRWKK L+PGLVKG WS  ED  L
Sbjct:   41 AVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKL 90
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S2BP72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP72_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.940e-14
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 AVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            AV+ +G+ NW+ +A+ V +R H+QC QRWKK L+PGLVKG WS +ED  L
Sbjct:   47 AVKEFGEVNWKAIAERVASRNHVQCLQRWKKVLKPGLVKGQWSAQEDAML 96
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S3V2K8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2K8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.600e-14
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 QAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            +AV+ YGD+NWR VA+ +  R++IQC QRWKK+LRPGL+KG W+ EED  L
Sbjct:   81 EAVKIYGDKNWRQVAKYIPGRSYIQCLQRWKKSLRPGLIKGHWTKEEDSKL 131
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A0P1ANL8_PLAHL (Myb-like dna-binding n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ANL8_PLAHL)

HSP 1 Score: 73.6 bits (179), Expect = 6.330e-14
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   10 QAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            +AVE +G RNW+ +A  VG R H QC QRW K L+PGLVKG WS EED  L
Sbjct:  187 KAVEEFGQRNWKAIASRVGGRNHAQCLQRWNKVLKPGLVKGHWSFEEDSTL 237
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S2T9W3_PROMC (Hypothetical protein (Fragment) n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2T9W3_PROMC)

HSP 1 Score: 67.8 bits (164), Expect = 1.820e-13
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   10 QAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            +AV+ Y   NW+ +A  V  R H+QC QRWKK L+PGLVKG W+ EED+ L
Sbjct:   24 KAVDKYSASNWKAIADHVDGRNHVQCLQRWKKVLQPGLVKGMWAQEEDDTL 74
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S2TCJ0_PROMC (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2TCJ0_PROMC)

HSP 1 Score: 72.0 bits (175), Expect = 2.200e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   13 AVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            AVE+Y  +NW+ +A+ V  RTH+QC QRWKK L+PGLVKG W+ EED+ L
Sbjct:  109 AVEHYQGKNWKAIAEAVPGRTHVQCLQRWKKVLQPGLVKGHWTEEEDQKL 158
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: A0A7S3M1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1M2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.070e-13
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   10 QAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            Q +E +GD +WR V++ VGTR  ++CQQRW K LRP L+KG W+ EED+ L
Sbjct:   11 QGIERFGDNDWRRVSEVVGTRDAVKCQQRWDKVLRPDLLKGKWTEEEDQRL 61
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BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Match: F0Y4V5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4V5_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 4.100e-13
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   13 AVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEEDENL 162
            AV+ +G+ NW+ +A  VG+R H+QC QRWKK L+PGLVKG W+  EDE L
Sbjct:   61 AVKQHGECNWKSIAAAVGSRNHMQCLQRWKKVLKPGLVKGNWTRSEDETL 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101863.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG8_ECTSI1.020e-1772.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K458_9PHAE1.320e-1770.37MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2UU49_9STRA1.860e-1462.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2BP72_9STRA2.940e-1456.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3V2K8_9STRA4.600e-1460.78Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0P1ANL8_PLAHL6.330e-1460.78Myb-like dna-binding n=1 Tax=Plasmopara halstedii ... [more]
A0A7S2T9W3_PROMC1.820e-1354.90Hypothetical protein (Fragment) n=1 Tax=Prorocentr... [more]
A0A7S2TCJ0_PROMC2.200e-1360.00Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S3M1M2_9STRA3.070e-1354.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0Y4V5_AURAN4.100e-1358.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101863contigH-elongata_contig101863:1713..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog2880.D7FQG8
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.1444063-CDS-H-elongata_contig101863:1712..18741622929558.1444063-CDS-H-elongata_contig101863:1712..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101863 1713..1874 +
1691679069.4875698-CDS-H-elongata_contig101863:1712..18741691679069.4875698-CDS-H-elongata_contig101863:1712..1874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101863 1713..1874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101863.161.1prot_H-elongata_contig101863.161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101863 1713..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101863.161.1

>prot_H-elongata_contig101863.161.1 ID=prot_H-elongata_contig101863.161.1|Name=mRNA_H-elongata_contig101863.161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MEWQAVENYGDRNWRHVAQTVGTRTHIQCQQRWKKALRPGLVKGAWSLEE
DENL
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mRNA from alignment at H-elongata_contig101863:1713..1874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101863.161.1 ID=mRNA_H-elongata_contig101863.161.1|Name=mRNA_H-elongata_contig101863.161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig101863:1713..1874+ (Himanthalia elongata Himel1 dioecious)
ATGGAATGGCAGGCGGTAGAAAATTACGGCGACAGGAATTGGCGACATGT
CGCGCAGACCGTGGGCACGCGCACGCACATCCAGTGCCAGCAGAGGTGGA
AGAAGGCTCTCAGGCCGGGTCTGGTAAAGGGGGCGTGGAGCCTCGAGGAG
GATGAGAACCTG
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Coding sequence (CDS) from alignment at H-elongata_contig101863:1713..1874+

>mRNA_H-elongata_contig101863.161.1 ID=mRNA_H-elongata_contig101863.161.1|Name=mRNA_H-elongata_contig101863.161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig101863:1713..1874+ (Himanthalia elongata Himel1 dioecious)
ATGGAATGGCAGGCGGTAGAAAATTACGGCGACAGGAATTGGCGACATGT
CGCGCAGACCGTGGGCACGCGCACGCACATCCAGTGCCAGCAGAGGTGGA
AGAAGGCTCTCAGGCCGGGTCTGGTAAAGGGGGCGTGGAGCCTCGAGGAG
GATGAGAACCTGATGGAATGGCAGGCGGTAGAAAATTACGGCGACAGGAA
TTGGCGACATGTCGCGCAGACCGTGGGCACGCGCACGCACATCCAGTGCC
AGCAGAGGTGGAAGAAGGCTCTCAGGCCGGGTCTGGTAAAGGGGGCGTGG
AGCCTCGAGGAGGATGAGAACCTG
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