mRNA_H-elongata_contig101831.157.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D7FR97_ECTSI (Ribosome biogenesis protein NSA2 homolog n=3 Tax=PX clade TaxID=569578 RepID=D7FR97_ECTSI) HSP 1 Score: 224 bits (570), Expect = 4.990e-72 Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV Sbjct: 150 VTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 260
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2V588_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V588_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.030e-66 Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KVTFVG+ FTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHL ILGVKKNPSSP+YTQLGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV Sbjct: 150 VTKVTFVGDDFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLQILGVKKNPSSPMYTQLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S3ZIB4_9EUKA (Ribosome biogenesis protein NSA2 homolog n=3 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A7S3ZIB4_9EUKA) HSP 1 Score: 207 bits (528), Expect = 1.470e-65 Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 I KVT+VGEGFTRK PKYERFIRPTGLRFKKAHVTHPELK TFHLDI+GVKKNP SPLYT LGV+TKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PE DGCINAVLLV Sbjct: 157 ITKVTYVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKCTFHLDIIGVKKNPQSPLYTNLGVITKGTVIEVNVSDLGLVTPSGKVVWGKYAQVTNNPENDGCINAVLLV 267
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D3B3Z7_POLPP (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3Z7_POLPP) HSP 1 Score: 207 bits (527), Expect = 1.680e-65 Identity = 98/111 (88.29%), Postives = 107/111 (96.40%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELK+TF+LDILGVKKNP SP YTQLGV+TKGT+IEVNVSDLGLVTQ+GKVVWGK+AQVTN+PE DGCINA+LLV Sbjct: 150 VTKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILGVKKNPQSPTYTQLGVITKGTIIEVNVSDLGLVTQTGKVVWGKFAQVTNNPENDGCINALLLV 260
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2SRB9_9STRA (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB9_9STRA) HSP 1 Score: 207 bits (527), Expect = 1.680e-65 Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KV FVGE FTRK PKYERFIRPTGLRFKKAHVTHPEL+ATFHLDI+GVKKNPSS LYTQLGV+TKGTVIEVNVS+LGLVTQSGKVVWGKYAQVTN+PELDGCINAVLLV Sbjct: 150 VTKVCFVGENFTRKNPKYERFIRPTGLRFKKAHVTHPELQATFHLDIIGVKKNPSSSLYTQLGVITKGTVIEVNVSELGLVTQSGKVVWGKYAQVTNNPELDGCINAVLLV 260
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: D8M881_BLAHO (Ribosome biogenesis protein NSA2 homolog n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M881_BLAHO) HSP 1 Score: 202 bits (515), Expect = 1.700e-64 Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 I KVTFVGEGFTRK PKYERF+RPTGLRFKKAHVTHPELK TF+LDI+GVKKNP S LYT+LGV+TKGT+IEVNVS+LGLVT+SGKVVWGKYAQVTN+PE DGCINA+LLV Sbjct: 90 ITKVTFVGEGFTRKPPKYERFVRPTGLRFKKAHVTHPELKTTFYLDIIGVKKNPQSKLYTELGVITKGTIIEVNVSELGLVTESGKVVWGKYAQVTNNPENDGCINAILLV 200
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2DND8_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DND8_9STRA) HSP 1 Score: 204 bits (520), Expect = 2.620e-64 Identity = 99/111 (89.19%), Postives = 105/111 (94.59%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KVTFVG FTRK PKYERFIRP+GLRFKKAHVTHPEL+ATFHLD+LGVKKNPSS LYTQLGV+TKGTVIEVNVSDLGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV Sbjct: 160 VTKVTFVGPNFTRKNPKYERFIRPSGLRFKKAHVTHPELQATFHLDLLGVKKNPSSNLYTQLGVITKGTVIEVNVSDLGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 270
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7S2AAY7_9EUKA (Hypothetical protein n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AAY7_9EUKA) HSP 1 Score: 202 bits (514), Expect = 3.220e-64 Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1 Query: 7 KVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 KVTFVGEGFTRK PKYERFIRP+ LRFKKAHVTHPELK TFHLDI+GVKKNPSSPLYT LGV+TKGT++EVNVSDLGLVT +GK+VWGKYAQVTN+PE DGCINAVLLV Sbjct: 101 KVTFVGEGFTRKPPKYERFIRPSALRFKKAHVTHPELKTTFHLDIIGVKKNPSSPLYTSLGVVTKGTILEVNVSDLGLVTPTGKIVWGKYAQVTNNPENDGCINAVLLV 209
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: W7THK2_9STRA (Ribosome biogenesis protein NSA2 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THK2_9STRA) HSP 1 Score: 203 bits (517), Expect = 5.520e-64 Identity = 98/111 (88.29%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KVTFVGE FTRKAPK+ERFIRPTGLRFKKAHVTHP+L+ATF LDILGVKKNPSSP+YT LGV+TKGTVIEVNVS+LGLVT SGKVVWGKYAQVTN+PELDGCINAVLLV Sbjct: 150 VTKVTFVGENFTRKAPKFERFIRPTGLRFKKAHVTHPDLQATFCLDILGVKKNPSSPMYTTLGVITKGTVIEVNVSELGLVTTSGKVVWGKYAQVTNNPELDGCINAVLLV 260
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Match: A0A7L1XHK7_9AVES (Ribosome biogenesis protein NSA2 homolog (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L1XHK7_9AVES) HSP 1 Score: 200 bits (509), Expect = 1.260e-63 Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 1 Query: 1 IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVKKNPSSPLYTQLGVMTKGTVIEVNVSDLGLVTQSGKVVWGKYAQVTNSPELDGCINAVLLV 333 + KV FVG+GFTRK PKYERFIRP GLRFKKAHVTHPELKATF L ILGVKKNPSSPLYTQLGV+TKGTVIEVNVS+LGLVTQ GKV+WGKYAQVTN+PE DGCINAVLLV Sbjct: 87 VTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTQLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 197 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101831.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig101831.157.1 >prot_H-elongata_contig101831.157.1 ID=prot_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp IVKVTFVGEGFTRKAPKYERFIRPTGLRFKKAHVTHPELKATFHLDILGVback to top mRNA from alignment at H-elongata_contig101831:681..1723+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig101831.157.1 ID=mRNA_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig101831:681..1723+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig101831:681..1723+ >mRNA_H-elongata_contig101831.157.1 ID=mRNA_H-elongata_contig101831.157.1|Name=mRNA_H-elongata_contig101831.157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig101831:681..1723+ (Himanthalia elongata Himel1 dioecious)back to top |